Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008236

Physical Location & Seq

Genomic Coordinates Reverse (-)

1740523 .. 1742186

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAGACTCTGCATCCACTACTCTCGCACGTGCCAACTTCTGACCACCGGTTTGTAGTTCAAGAGATGATGTGCTTGCAAAGCTCGAGCTGGACTAAAGAAGAGAACAAGAAGTTTGAGCGAGCTCTTGCTGTCTACGCTGATGACACGCCTGATCGCTGGTTCAAAGTTGCTGCTATGATCCCTGGAAAGACCATATCAGATGTCATGAGGCAATACTCTAAGCTTGAAGAAGACCTCTTCGATATCGAAGCAGGACTTGTCCCGATCCCGGGTTACCGTTCAGTTACTCCTTGTGGATTTGATCAGGTTGTGAGTCCACGTGACTTTGATGCGTATCGTAAACTTCCTAATGGAGCCAGAGGATTTGATCAAGACCGTAGGAAAGGAGTTCCATGGACGGAGGAAGAACACAGGAGATTCTTGTTAGGGCTTCTCAAGTATGGGAAAGGAGATTGGAGAAACATATCGAGGAACTTTGTGGGATCAAAAACACCAACTCAGGTTGCAAGTCATGCCCAAAAGTACTACCAAAGACAGCTTTCCGGTGCGAAAGACAAACGACGGCCTAGCATTCACGACATCACCACCGTCAATCTTCTCAATGCCAATCTTAGCCGTCCATCGTCTGATCACGGTTGCTTAGTCTCAAAACAGGCCGAGCCGAAACTAGGGTTCACCGACAGGGATAATGCAGAGGAGGGAGTTATGTTTCTTGGTCAGAATCTATCCTCGGTCTTCTCTTCCTACGATCCTGCCATTAAGTTTTCCGGAGCAAATGTTTACGGTGAAGGAGGTTACTGTATCTCACAAGATCTTGAAACGAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

277

Amino Acids

31.38

Weight (kDa)

8.25

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	30 - 75	2.2e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	131 - 176	6.3e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11280 AT3G11280 AT5G05790 AT5G05790
fragaria_vesca	FvH4_7g23990 FvH4_7g23990 FvH4_7g23990
malus_domestica	MD01G1146800.v1.1 MD07G1213500.v1.1
prunus_persica	Prupe.2G245900_v2.0.a1 Prupe.2G245900_v2.0.a1
pyrus_communis	pycom01g16600 pycom07g19630
rosa_chinensis	RchiOBHm_Chr1g0369341
rosa_laevigata	RLG00000027136
rosa_multiflora	Rmu_sc0001482.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287720
rosa_rugosa	Rorug01G0349700
rosa_samantha	Rh1AG356900 Rh1BG320900 Rh1CG334900 Rh1DG351600
rosa_wichuraiana	Rw1G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	770
AclWI	GGATC	4 cut(s)	175, 262, 493, 746
AcvI	CACGTG	2 cut(s)	31, 323
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	3 cut(s)	271, 272, 671
AgeI	ACCGGT	1 cut(s)	48
AgsI	TTSAA	4 cut(s)	62, 166, 230, 821
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	5 cut(s)	84, 90, 125, 226, 541
AluI	AGCT	5 cut(s)	84, 90, 125, 226, 541
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	652
AlwI	GGATC	4 cut(s)	175, 262, 493, 746
Ama87I	CYCGRG	2 cut(s)	85, 271
Aor13HI	TCCGGA	1 cut(s)	770
AoxI	GGCC	2 cut(s)	566, 657
ApeKI	GCWGC	1 cut(s)	173
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
AsiGI	ACCGGT	1 cut(s)	48
AsuC2I	CCSGG	2 cut(s)	272, 273
AsuHPI	GGTGA	3 cut(s)	577, 670, 800
AvaI	CYCGRG	2 cut(s)	85, 271
BanII	GRGCYC	1 cut(s)	127
BbrPI	CACGTG	2 cut(s)	31, 323
BbsI	GAAGAC	2 cut(s)	240, 730
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	631
BceAI	ACGGC	2 cut(s)	581, 603
BciT130I	CCWGG	1 cut(s)	186
BclI	TGATCA	3 cut(s)	304, 370, 631
BcnI	CCSGG	2 cut(s)	272, 273
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	2 cut(s)	570, 671
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmcAI	AGTACT	1 cut(s)	527
Bme1390I	CCNGG	3 cut(s)	186, 272, 273
BmeT110I	CYCGRG	2 cut(s)	85, 271
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	3 cut(s)	186, 272, 273
BmsI	GCATC	2 cut(s)	22, 322
BpiI	GAAGAC	2 cut(s)	240, 730
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	272, 273
BsaAI	YACGTR	2 cut(s)	31, 323
BsaBI	GATNNNNATC	1 cut(s)	336
BsaJI	CCNNGG	4 cut(s)	184, 271, 395, 732
BsaWI	WCCGGW	3 cut(s)	48, 545, 770
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 272, 671
Bse118I	RCCGGY	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	336
BseAI	TCCGGA	1 cut(s)	770
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	4 cut(s)	184, 271, 395, 732
BseGI	GGATG	1 cut(s)	13
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	3 cut(s)	271, 272, 671
BseMII	CTCAG	1 cut(s)	515
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	2 cut(s)	568, 659
BshTI	ACCGGT	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	2 cut(s)	85, 271
BsiSI	CCGG	4 cut(s)	49, 272, 546, 771
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	271, 272, 671
BsmAI	GTCTC	1 cut(s)	652
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	2 cut(s)	568, 659
BsoBI	CYCGRG	2 cut(s)	85, 271
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp13I	TCCGGA	1 cut(s)	770
Bsp143I	GATC	9 cut(s)	154, 180, 267, 304, 370, 485, 631, 751, 814
Bsp19I	CCATGG	1 cut(s)	395
BspANI	GGCC	2 cut(s)	568, 659
BspCNI	CTCAG	1 cut(s)	514
BspEI	TCCGGA	1 cut(s)	770
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	358
BspPI	GGATC	4 cut(s)	175, 262, 493, 746
BsrFI	RCCGGY	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	4 cut(s)	184, 271, 395, 732
BssMI	GATC	9 cut(s)	154, 180, 267, 304, 370, 485, 631, 751, 814
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	6 cut(s)	281, 380, 592, 638, 788, 803
Bst6I	CTCTTC	3 cut(s)	96, 245, 748
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstBAI	YACGTR	2 cut(s)	31, 323
BstC8I	GCNNGC	2 cut(s)	77, 123
BstDEI	CTNAG	4 cut(s)	222, 501, 614, 643
BstDSI	CCRYGG	1 cut(s)	395
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	9 cut(s)	157, 183, 270, 307, 373, 488, 634, 754, 817
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	9 cut(s)	154, 180, 267, 304, 370, 485, 631, 751, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 137, 515
BstNI	CCWGG	1 cut(s)	186
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	184, 270, 271
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	2 cut(s)	240, 730
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BsuRI	GGCC	2 cut(s)	568, 659
BtgI	CCRYGG	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	13
Cac8I	GCNNGC	2 cut(s)	77, 123
CciI	TCATGA	1 cut(s)	207
Cfr10I	RCCGGY	1 cut(s)	48
Cfr9I	CCCGGG	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	526
CspAI	ACCGGT	1 cut(s)	48
CviAII	CATG	3 cut(s)	208, 396, 515
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	4 cut(s)	222, 501, 614, 643
DpnI	GATC	9 cut(s)	156, 182, 269, 306, 372, 487, 633, 753, 816
DpnII	GATC	9 cut(s)	154, 180, 267, 304, 370, 485, 631, 751, 814
Eam1104I	CTCTTC	3 cut(s)	96, 245, 748
EarI	CTCTTC	3 cut(s)	96, 245, 748
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	125
Eco72I	CACGTG	2 cut(s)	31, 323
Eco88I	CYCGRG	2 cut(s)	85, 271
Eco91I	GGTNACC	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	125
EcoO65I	GGTNACC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	184
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	3 cut(s)	211, 399, 518
FaiI	YATR	8 cut(s)	179, 197, 209, 397, 444, 467, 516, 710
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	207, 395, 514
FbaI	TGATCA	3 cut(s)	304, 370, 631
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	174
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	2 cut(s)	570, 671
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	568, 659
HapII	CCGG	4 cut(s)	49, 272, 546, 771
Hin1II	CATG	3 cut(s)	211, 399, 518
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	4 cut(s)	7, 316, 420, 724
HpaII	CCGG	4 cut(s)	49, 272, 546, 771
HphI	GGTGA	3 cut(s)	577, 670, 800
Hpy166II	GTNNAC	5 cut(s)	136, 320, 344, 678, 784
Hpy188I	TCNGA	4 cut(s)	43, 202, 631, 723
Hpy188III	TCNNGA	7 cut(s)	62, 208, 265, 374, 578, 771, 818
Hpy8I	GTNNAC	5 cut(s)	136, 320, 344, 678, 784
Hpy99I	CGWCG	1 cut(s)	567
HpyAV	CCTTC	1 cut(s)	785
HpyCH4III	ACNGT	6 cut(s)	281, 380, 592, 638, 788, 803
HpyCH4IV	ACGT	2 cut(s)	30, 322
HpyCH4V	TGCA	4 cut(s)	13, 79, 509, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 137, 515
HpyF3I	CTNAG	4 cut(s)	222, 501, 614, 643
HpySE526I	ACGT	2 cut(s)	30, 322
Hsp92II	CATG	3 cut(s)	211, 399, 518
Kpn2I	TCCGGA	1 cut(s)	770
Ksp22I	TGATCA	3 cut(s)	304, 370, 631
Kzo9I	GATC	9 cut(s)	154, 180, 267, 304, 370, 485, 631, 751, 814
LmnI	GCTCC	2 cut(s)	356, 773
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	22, 322
MaeI	CTAG	2 cut(s)	570, 671
MaeII	ACGT	2 cut(s)	30, 322
MaeIII	GTNAC	4 cut(s)	275, 286, 323, 797
MalI	GATC	9 cut(s)	156, 182, 269, 306, 372, 487, 633, 753, 816
MboI	GATC	9 cut(s)	154, 180, 267, 304, 370, 485, 631, 751, 814
MboII	GAAGA	8 cut(s)	113, 232, 242, 245, 419, 590, 730, 735
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	9 cut(s)	204, 248, 356, 397, 465, 691, 694, 742, 788
MroI	TCCGGA	1 cut(s)	770
MseI	TTAA	1 cut(s)	762
MspI	CCGG	4 cut(s)	49, 272, 546, 771
MspR9I	CCNGG	3 cut(s)	186, 272, 273
Mva1269I	GAATGC	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	81, 137, 515
NciI	CCSGG	2 cut(s)	272, 273
NcoI	CCATGG	1 cut(s)	395
NdeII	GATC	9 cut(s)	154, 180, 267, 304, 370, 485, 631, 751, 814
NlaIII	CATG	3 cut(s)	211, 399, 518
NlaIV	GGNNCC	1 cut(s)	358
NmeAIII	GCCGAG	1 cut(s)	685
NmuCI	GTSAC	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	85
PagI	TCATGA	1 cut(s)	207
PctI	GAATGC	1 cut(s)	573
PfeI	GAWTC	2 cut(s)	420, 724
PinAI	ACCGGT	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	324
PmaCI	CACGTG	2 cut(s)	31, 323
PmlI	CACGTG	2 cut(s)	31, 323
PpsI	GAGTC	1 cut(s)	324
Ppu21I	YACGTR	2 cut(s)	31, 323
Psp124BI	GAGCTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	184
PspCI	CACGTG	2 cut(s)	31, 323
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	358
PspXI	VCTCGAGB	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	814
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SacI	GAGCTC	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	9 cut(s)	154, 180, 267, 304, 370, 485, 631, 751, 814
ScaI	AGTACT	1 cut(s)	527
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	3 cut(s)	186, 272, 273
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	2 cut(s)	22, 322
Sfr274I	CTCGAG	1 cut(s)	85
SlaI	CTCGAG	1 cut(s)	85
SmaI	CCCGGG	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	85, 437
SmoI	CTYRAG	2 cut(s)	85, 437
SspMI	CTAG	2 cut(s)	570, 671
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	3 cut(s)	184, 270, 271
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	6 cut(s)	281, 380, 592, 638, 788, 803
TaiI	ACGT	2 cut(s)	33, 325
TaqI	TCGA	4 cut(s)	86, 243, 249, 470
TaqII	GACCGA	1 cut(s)	724
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	2 cut(s)	420, 724
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	416
TspMI	CCCGGG	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	85
XmaI	CCCGGG	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	570, 671
ZrmI	AGTACT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.