Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008236

Physical Location & Seq

Genomic Coordinates Forward (+)

29106077 .. 29108235

Gene Structure 2159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1213500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAGACCTTGTATCCGGCTTCAAACATGGCGGATTATGATTGGTACTCAGAGTGGACTAAGGAGGAGAACAAGATGTTTGAGAGTGCCCTGGCGATGTTCGATGAGAAAACGCCGGACAGGTGGCGGAAGGTGGCGGAGATGATTCCGGGGAAGACGGAGATCGACGTGATCAAACAGTACCAGGACCTGGAGGAAGATGTTTGTGAAATAGAATCCGGGAGGTTTCCGATTCCTCCAGGGTACCCTCAGTCATACTTCACATTGGAGTTGGGGGATGATCGAGATTTCAATGCTAATCGAAAGAGGCCGGCAGCGGCGAGGGGTTCTGATCAGGAGAGGAAGAGGGGAATTCCATGGACACCCGAAGAGCACAGGCGGTTTCTGCTGGGACTTCTAAAGTACGGGAAAGGGGACTGGAGAAACATCTCTCGGAATTATGTGGTCACTAAAACTCCCACACAAGTAGCAAGCCATGCTCAGAAATACTTCATGAGGCAGGATTCAGGAGGGAAAGATAAAAGGCGGCCAAGCATCCATGACATAACCACTGTCAACCTCACAAGCAATACTCCACCAGAAACTAACAGGTCTCCTTCAGACCAGTCTCCACCGGAGCAGAAGTCCACTGAATCGCCAAACGTGTTACTTGACTGGAATGAGGCTGATGATGGAGGAGCCGCTATGGTTTTCGGCTCTACTCATGGCAATCTCTTAGATCCATCTCCATATGATGTACCAGCAGATGGGATTAAAATGCAGTTGCAGAAACTATACAGCCACGCTCATTATGCTGCTCATGCCACACCTCAAAATTCGCTATATCTAATGCAGTCCGCGAGACATCAGATTCATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.68

Weight (kDa)

5.75

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	17 - 66	9.7e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	18 - 63	3.5e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	119 - 164	6.3e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11280 AT3G11280 AT5G05790 AT5G05790
fragaria_vesca	FvH4_7g23990 FvH4_7g23990 FvH4_7g23990
malus_domestica	MD01G1146800.v1.1 MD07G1213500.v1.1
prunus_persica	Prupe.2G245900_v2.0.a1 Prupe.2G245900_v2.0.a1
pyrus_communis	pycom01g16600 pycom07g19630
rosa_chinensis	RchiOBHm_Chr1g0369341
rosa_laevigata	RLG00000027136
rosa_multiflora	Rmu_sc0001482.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287720
rosa_rugosa	Rorug01G0349700
rosa_samantha	Rh1AG356900 Rh1BG320900 Rh1CG334900 Rh1DG351600
rosa_wichuraiana	Rw1G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	243
AccB7I	CCANNNNNTGG	2 cut(s)	190, 746
AccII	CGCG	1 cut(s)	839
AciI	CCGC	8 cut(s)	32, 127, 137, 317, 379, 526, 681, 837
AclWI	GGATC	1 cut(s)	713
AcoI	YGGCCR	1 cut(s)	527
AcsI	RAATTY	2 cut(s)	351, 814
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	5 cut(s)	47, 182, 245, 404, 738
AfiI	CCNNNNNNNGG	2 cut(s)	190, 746
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	2 cut(s)	24, 292
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	4 cut(s)	90, 183, 189, 238
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	3 cut(s)	597, 612, 835
AlwI	GGATC	1 cut(s)	713
AlwNI	CAGNNNCTG	1 cut(s)	190
AoxI	GGCC	2 cut(s)	308, 527
ApeKI	GCWGC	2 cut(s)	314, 794
ApoI	RAATTY	2 cut(s)	351, 814
Asp700I	GAANNNNTTC	1 cut(s)	488
Asp718I	GGTACC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	2 cut(s)	150, 220
AvaII	GGWCC	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	326, 781
BccI	CCATC	3 cut(s)	665, 730, 740
BciT130I	CCWGG	4 cut(s)	92, 185, 191, 240
BciVI	GTATCC	1 cut(s)	24
BclI	TGATCA	2 cut(s)	171, 331
BcnI	CCSGG	2 cut(s)	150, 220
BcoDI	GTCTC	3 cut(s)	597, 612, 835
BfuI	GTATCC	1 cut(s)	24
BisI	GCNGC	5 cut(s)	315, 318, 527, 681, 795
BlsI	GCNGC	5 cut(s)	316, 319, 528, 682, 796
Bme1390I	CCNGG	6 cut(s)	92, 150, 185, 191, 220, 240
Bme18I	GGWCC	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	245, 679
BmrFI	CCNGG	6 cut(s)	92, 150, 185, 191, 220, 240
BmsI	GCATC	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	3 cut(s)	212, 222, 439
BpuMI	CCSGG	2 cut(s)	150, 220
BsaI	GGTCTC	1 cut(s)	597
BsaJI	CCNNGG	4 cut(s)	90, 149, 239, 356
BsaWI	WCCGGW	1 cut(s)	613
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 439, 469, 608, 638
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 746
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	3 cut(s)	422, 604, 659
BseBI	CCWGG	4 cut(s)	92, 185, 191, 240
BseDI	CCNNGG	4 cut(s)	90, 149, 239, 356
BseGI	GGATG	2 cut(s)	283, 534
BseLI	CCNNNNNNNGG	2 cut(s)	190, 746
BseMII	CTCAG	3 cut(s)	63, 263, 494
BseNI	ACTGG	3 cut(s)	422, 604, 659
BseRI	GAGGAG	2 cut(s)	80, 690
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	326, 781
BseYI	CCCAGC	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	839
BshFI	GGCC	2 cut(s)	310, 529
BshNI	GGYRCC	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	6 cut(s)	17, 116, 149, 219, 311, 614
BslFI	GGGAC	2 cut(s)	405, 428
BslI	CCNNNNNNNGG	2 cut(s)	190, 746
BsmAI	GTCTC	3 cut(s)	597, 612, 835
BsmFI	GGGAC	2 cut(s)	405, 428
BsnI	GGCC	2 cut(s)	310, 529
Bso31I	GGTCTC	1 cut(s)	597
Bsp1286I	GDGCHC	2 cut(s)	91, 375
Bsp143I	GATC	5 cut(s)	162, 171, 280, 331, 718
Bsp19I	CCATGG	1 cut(s)	356
BspACI	CCGC	8 cut(s)	32, 127, 137, 317, 379, 526, 681, 837
BspANI	GGCC	2 cut(s)	310, 529
BspCNI	CTCAG	3 cut(s)	62, 262, 493
BspFNI	CGCG	1 cut(s)	839
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	245, 679
BspPI	GGATC	1 cut(s)	713
BspQI	GCTCTTC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	3 cut(s)	422, 604, 659
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	4 cut(s)	90, 149, 239, 356
BssMI	GATC	5 cut(s)	162, 171, 280, 331, 718
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	4 cut(s)	92, 185, 191, 240
Bst4CI	ACNGT	2 cut(s)	180, 553
Bst6I	CTCTTC	2 cut(s)	338, 363
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	2 cut(s)	312, 472
BstDEI	CTNAG	5 cut(s)	49, 60, 249, 480, 715
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	283, 534
BstFNI	CGCG	1 cut(s)	839
BstKTI	GATC	5 cut(s)	165, 174, 283, 334, 721
BstMAI	GTCTC	3 cut(s)	597, 612, 835
BstMBI	GATC	5 cut(s)	162, 171, 280, 331, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	385, 476, 791, 800
BstNI	CCWGG	4 cut(s)	92, 185, 191, 240
BstSCI	CCNGG	6 cut(s)	90, 148, 183, 189, 218, 238
BstSLI	GKGCMC	1 cut(s)	91
BstUI	CGCG	1 cut(s)	839
BstV1I	GCAGC	2 cut(s)	326, 781
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	310, 529
BtgI	CCRYGG	1 cut(s)	356
BtgZI	GCGATG	1 cut(s)	110
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	283, 534
BtsIMutI	CAGTG	2 cut(s)	549, 627
Cac8I	GCNNGC	2 cut(s)	312, 472
CaiI	CAGNNNCTG	1 cut(s)	190
CciI	TCATGA	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	5 cut(s)	46, 181, 244, 403, 737
CviAII	CATG	8 cut(s)	28, 357, 476, 493, 539, 704, 800, 854
CviJI	RGCY	8 cut(s)	20, 310, 474, 529, 665, 680, 696, 780
CviKI_1	RGCY	8 cut(s)	20, 310, 474, 529, 665, 680, 696, 780
CviQI	GTAC	5 cut(s)	46, 181, 244, 403, 737
DdeI	CTNAG	5 cut(s)	49, 60, 249, 480, 715
DpnI	GATC	5 cut(s)	164, 173, 282, 333, 720
DpnII	GATC	5 cut(s)	162, 171, 280, 331, 718
EaeI	YGGCCR	1 cut(s)	527
Eam1104I	CTCTTC	2 cut(s)	338, 363
EarI	CTCTTC	2 cut(s)	338, 363
EciI	GGCGGA	3 cut(s)	47, 142, 152
Eco130I	CCWWGG	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	582
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	351
EcoRII	CCWGG	4 cut(s)	90, 183, 189, 238
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	8 cut(s)	31, 360, 479, 496, 542, 707, 803, 857
FaqI	GGGAC	2 cut(s)	405, 428
FatI	CATG	8 cut(s)	27, 356, 475, 492, 538, 703, 799, 853
FauNDI	CATATG	1 cut(s)	730
FbaI	TGATCA	2 cut(s)	171, 331
Fnu4HI	GCNGC	5 cut(s)	315, 318, 527, 681, 795
FokI	GGATG	2 cut(s)	290, 521
Fsp4HI	GCNGC	5 cut(s)	315, 318, 527, 681, 795
GluI	GCNGC	5 cut(s)	315, 318, 527, 681, 795
GsaI	CCCAGC	1 cut(s)	392
GsuI	CTGGAG	3 cut(s)	212, 222, 439
HaeIII	GGCC	2 cut(s)	310, 529
HapII	CCGG	6 cut(s)	17, 116, 149, 219, 311, 614
Hin1II	CATG	8 cut(s)	31, 360, 479, 496, 542, 707, 803, 857
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	6 cut(s)	145, 215, 232, 503, 632, 850
HpaII	CCGG	6 cut(s)	17, 116, 149, 219, 311, 614
Hpy166II	GTNNAC	3 cut(s)	57, 556, 627
Hpy188I	TCNGA	7 cut(s)	52, 231, 331, 435, 483, 601, 849
Hpy188III	TCNNGA	4 cut(s)	284, 335, 493, 507
Hpy8I	GTNNAC	3 cut(s)	57, 556, 627
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	124, 606
HpyCH4III	ACNGT	2 cut(s)	180, 553
HpyCH4IV	ACGT	2 cut(s)	168, 642
HpyCH4V	TGCA	3 cut(s)	760, 766, 832
HpyF10VI	GCNNNNNNNGC	4 cut(s)	385, 476, 791, 800
HpyF3I	CTNAG	5 cut(s)	49, 60, 249, 480, 715
HpySE526I	ACGT	2 cut(s)	168, 642
Hsp92II	CATG	8 cut(s)	31, 360, 479, 496, 542, 707, 803, 857
KpnI	GGTACC	1 cut(s)	247
KroI	GCCGGC	1 cut(s)	310
KroNI	GCCGGC	1 cut(s)	312
Ksp22I	TGATCA	2 cut(s)	171, 331
Kzo9I	GATC	5 cut(s)	162, 171, 280, 331, 718
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	2 cut(s)	616, 677
Lsp1109I	GCAGC	2 cut(s)	326, 781
LweI	GCATC	1 cut(s)	543
MaeII	ACGT	2 cut(s)	168, 642
MaeIII	GTNAC	2 cut(s)	445, 645
MalI	GATC	5 cut(s)	164, 173, 282, 333, 720
MboI	GATC	5 cut(s)	162, 171, 280, 331, 718
MboII	GAAGA	4 cut(s)	166, 209, 355, 380
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	2 cut(s)	91, 375
MluCI	AATT	3 cut(s)	351, 436, 814
MroNI	GCCGGC	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	1 cut(s)	753
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	6 cut(s)	17, 116, 149, 219, 311, 614
MspR9I	CCNGG	6 cut(s)	92, 150, 185, 191, 220, 240
MvaI	CCWGG	4 cut(s)	92, 185, 191, 240
MvnI	CGCG	1 cut(s)	839
MwoI	GCNNNNNNNGC	4 cut(s)	385, 476, 791, 800
NaeI	GCCGGC	1 cut(s)	312
NciI	CCSGG	2 cut(s)	150, 220
NcoI	CCATGG	1 cut(s)	356
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	5 cut(s)	162, 171, 280, 331, 718
NgoMIV	GCCGGC	1 cut(s)	310
NlaIII	CATG	8 cut(s)	31, 360, 479, 496, 542, 707, 803, 857
NlaIV	GGNNCC	2 cut(s)	245, 679
NmuCI	GTSAC	1 cut(s)	445
PagI	TCATGA	1 cut(s)	492
PciSI	GCTCTTC	1 cut(s)	363
PdiI	GCCGGC	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	6 cut(s)	145, 215, 232, 503, 632, 850
PflMI	CCANNNNNTGG	2 cut(s)	190, 746
PfoI	TCCNGGA	1 cut(s)	218
PkrI	GCNGC	5 cut(s)	316, 319, 528, 682, 796
PpuMI	RGGWCCY	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	4 cut(s)	90, 183, 189, 238
PspFI	CCCAGC	1 cut(s)	388
PspGI	CCWGG	4 cut(s)	90, 183, 189, 238
PspN4I	GGNNCC	2 cut(s)	245, 679
PspPI	GGNCC	1 cut(s)	187
PspPPI	RGGWCCY	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	718
RsaI	GTAC	5 cut(s)	47, 182, 245, 404, 738
RsaNI	GTAC	5 cut(s)	46, 181, 244, 403, 737
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	753
SatI	GCNGC	5 cut(s)	315, 318, 527, 681, 795
Sau3AI	GATC	5 cut(s)	162, 171, 280, 331, 718
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	6 cut(s)	92, 150, 185, 191, 220, 240
SduI	GDGCHC	2 cut(s)	91, 375
SfaNI	GCATC	1 cut(s)	543
SinI	GGWCC	1 cut(s)	187
Sse9I	AATT	3 cut(s)	351, 436, 814
SsiI	CCGC	8 cut(s)	32, 127, 137, 317, 379, 526, 681, 837
StyD4I	CCNGG	6 cut(s)	90, 148, 183, 189, 218, 238
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	2 cut(s)	180, 553
TaiI	ACGT	2 cut(s)	171, 645
TaqI	TCGA	4 cut(s)	102, 165, 283, 301
TasI	AATT	3 cut(s)	351, 436, 814
TauI	GCSGC	3 cut(s)	320, 529, 683
TfiI	GAWTC	6 cut(s)	145, 215, 232, 503, 632, 850
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	2 cut(s)	556, 634
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	2 cut(s)	314, 794
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	2 cut(s)	481, 842
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	2 cut(s)	556, 634
Van91I	CCANNNNNTGG	2 cut(s)	190, 746
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	2 cut(s)	351, 814
XmnI	GAANNNNTTC	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.