Prupe.2G245900_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0008236
Physical Location & Seq
Forward (+)
26286623 .. 26289042
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G245900.2

Sequence Viewer

Length: 873 bp
ATGGAGACTTTGTATCCAGCTTCATATATGGCTGATTCTAACTGGTTCATCCAAGACAGCCAGAGCTCAGAATGGACTAAAGAAGAGAACAAGAAGTTTGAGAGTGCTCTGGCTATGTTTGATGAGAAAACGCCTGACAGGTGGCTGAAGGTGGCTTCAATGATACCGGGGAAGACGGTTATCGATGTGATCAAGCAGTATCAGGAGCTGGAAGAAGATGTTAGTGAAATAGAATCTGGGAGGTTTCCAATTCCAGGGTACCTTACATCTTCTTTCACATTGGACTTGGGAGATGATCGAAATTTTGATGCTAATAGAAAGAGGCCTTCTGCAGCTCGAGGTTCTGATCAGGAAAGGAAGAAGGGAATTCCATGGACAGAAGAGGAGCACAGGCGGTTTCTGATGGGACTTCTAAAATATGGGAAAGGGGACTGGAGAAATATTTCCAGGAATTTTGTAATCTCTAAAACTCCCACACAAGTGGCAAGCCATGCTCAAAAATACTTTATGAGGCAGCACTCAGGAGGGAAGGATAAAAGAAGACCAAGCATCCACGACATAACGACTGTCAACCTCACAAGCACTACTCCATCAGAAAATAATAGGCCTCCTTTAGACCAGTCTCCACCAGAGCAGAAGTCCACTGAATCACCAAAAGCATTACTTGACTGGAATGCGTGTGATGATGGAGGAGCCATGGTTTTTGGCTCCACTCATGGCAGTCTTTTCGAGTCGTCTCCGTATGATGTAGCTGCAGAAGGGATTAAGCTACAGTTGCAAAAACTCTACAGCAGTGCTAATTTTGCTGCTCATGCCAAACCCCAAAATTCGATGTATCTAATGCAGACCTCAAGACATCAGATACATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

291

Amino Acids

32.9

Weight (kDa)

6.47

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AciI CCGC 1 cut(s) 394
AcsI RAATTY 4 cut(s) 301, 366, 451, 826
AcuI CTGAAG 1 cut(s) 167
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 1 cut(s) 159
AjnI CCWGG 2 cut(s) 253, 446
AleI CACNNNNGTG 1 cut(s) 479
AluBI AGCT 6 cut(s) 20, 66, 208, 335, 752, 769
AluI AGCT 6 cut(s) 20, 66, 208, 335, 752, 769
Alw21I GWGCWC 3 cut(s) 68, 109, 390
Alw26I GTCTC 2 cut(s) 627, 741
AlwNI CAGNNNCTG 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 2 cut(s) 323, 605
ApeKI GCWGC 4 cut(s) 332, 514, 752, 806
ApoI RAATTY 4 cut(s) 301, 366, 451, 826
Asp700I GAANNNNTTC 1 cut(s) 442
Asp718I GGTACC 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 642
AvaI CYCGRG 1 cut(s) 336
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 179, 547
Bbv12I GWGCWC 3 cut(s) 68, 109, 390
BbvI GCAGC 4 cut(s) 344, 526, 739, 793
BccI CCATC 3 cut(s) 397, 598, 680
BcgI CGANNNNNNTGC 2 cut(s) 709, 743
BciT130I CCWGG 2 cut(s) 255, 448
BciVI GTATCC 1 cut(s) 24
BclI TGATCA 2 cut(s) 189, 346
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 627, 741
BfmI CTRYAG 4 cut(s) 330, 753, 770, 787
BfuI GTATCC 1 cut(s) 24
BisI GCNGC 4 cut(s) 333, 515, 753, 807
BlsI GCNGC 4 cut(s) 334, 516, 754, 808
Bme1390I CCNGG 3 cut(s) 168, 255, 448
BmeT110I CYCGRG 1 cut(s) 336
BmiI GGNNCC 3 cut(s) 260, 694, 709
BmrFI CCNGG 3 cut(s) 168, 255, 448
BmsI GCATC 2 cut(s) 298, 558
BpiI GAAGAC 2 cut(s) 179, 547
BpmI CTGGAG 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 835
BpuMI CCSGG 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 183
BsaJI CCNNGG 4 cut(s) 167, 254, 371, 696
BsaXI ACNNNNNCTCC 3 cut(s) 26, 684, 714
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 4 cut(s) 47, 437, 619, 674
BseBI CCWGG 2 cut(s) 255, 448
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 4 cut(s) 167, 254, 371, 696
BseGI GGATG 2 cut(s) 48, 549
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 2 cut(s) 81, 534
BseNI ACTGG 4 cut(s) 47, 437, 619, 674
BseRI GAGGAG 2 cut(s) 398, 705
BseXI GCAGC 4 cut(s) 344, 526, 739, 793
BshFI GGCC 2 cut(s) 325, 607
BshNI GGYRCC 1 cut(s) 258
BshVI ATCGAT 1 cut(s) 183
BsiHKAI GWGCWC 3 cut(s) 68, 109, 390
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 2 cut(s) 420, 443
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 2 cut(s) 627, 741
BsmBI CGTCTC 1 cut(s) 741
BsmFI GGGAC 2 cut(s) 420, 443
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 2 cut(s) 325, 607
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 3 cut(s) 68, 109, 390
Bsp143I GATC 3 cut(s) 189, 295, 346
Bsp19I CCATGG 2 cut(s) 371, 696
BspACI CCGC 1 cut(s) 394
BspANI GGCC 2 cut(s) 325, 607
BspCNI CTCAG 2 cut(s) 80, 533
BspDI ATCGAT 1 cut(s) 183
BspLI GGNNCC 3 cut(s) 260, 694, 709
BspMAI CTGCAG 2 cut(s) 334, 757
BspT107I GGYRCC 1 cut(s) 258
BsrI ACTGG 4 cut(s) 47, 437, 619, 674
BssECI CCNNGG 4 cut(s) 167, 254, 371, 696
BssMI GATC 3 cut(s) 189, 295, 346
BssT1I CCWWGG 2 cut(s) 371, 696
Bst2UI CCWGG 2 cut(s) 255, 448
Bst4CI ACNGT 3 cut(s) 178, 568, 774
Bst6I CTCTTC 2 cut(s) 78, 375
BstAPI GCANNNNNTGC 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 487
BstDEI CTNAG 2 cut(s) 67, 520
BstDSI CCRYGG 2 cut(s) 371, 696
BstF5I GGATG 2 cut(s) 48, 549
BstKTI GATC 3 cut(s) 192, 298, 349
BstMAI GTCTC 2 cut(s) 627, 741
BstMBI GATC 3 cut(s) 189, 295, 346
BstMWI GCNNNNNNNGC 4 cut(s) 491, 775, 803, 812
BstNI CCWGG 2 cut(s) 255, 448
BstSCI CCNGG 3 cut(s) 166, 253, 446
BstSFI CTRYAG 4 cut(s) 330, 753, 770, 787
BstV1I GCAGC 4 cut(s) 344, 526, 739, 793
BstV2I GAAGAC 2 cut(s) 179, 547
BstXI CCANNNNNNTGG 1 cut(s) 481
Bsu15I ATCGAT 1 cut(s) 183
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 2 cut(s) 325, 607
BsuTUI ATCGAT 1 cut(s) 183
BtgI CCRYGG 2 cut(s) 371, 696
BtsCI GGATG 2 cut(s) 48, 549
BtsI GCAGTG 1 cut(s) 799
BtsIMutI CAGTG 2 cut(s) 642, 799
Cac8I GCNNGC 1 cut(s) 487
CaiI CAGNNNCTG 1 cut(s) 208
ClaI ATCGAT 1 cut(s) 183
Csp6I GTAC 1 cut(s) 259
CviAII CATG 6 cut(s) 372, 491, 697, 716, 812, 866
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 67, 520
DpnI GATC 3 cut(s) 191, 297, 348
DpnII GATC 3 cut(s) 189, 295, 346
Eam1104I CTCTTC 2 cut(s) 78, 375
EarI CTCTTC 2 cut(s) 78, 375
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 371, 696
Eco147I AGGCCT 2 cut(s) 325, 607
Eco24I GRGCYC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 253, 446
EcoT14I CCWWGG 2 cut(s) 371, 696
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 2 cut(s) 371, 696
Esp3I CGTCTC 1 cut(s) 741
FaeI CATG 6 cut(s) 375, 494, 700, 719, 815, 869
FalI AAGNNNNNCTT 2 cut(s) 648, 680
FaqI GGGAC 2 cut(s) 420, 443
FatI CATG 6 cut(s) 371, 490, 696, 715, 811, 865
FbaI TGATCA 2 cut(s) 189, 346
Fnu4HI GCNGC 4 cut(s) 333, 515, 753, 807
FokI GGATG 2 cut(s) 35, 536
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 4 cut(s) 333, 515, 753, 807
GluI GCNGC 4 cut(s) 333, 515, 753, 807
GsuI CTGGAG 1 cut(s) 454
HaeIII GGCC 2 cut(s) 325, 607
HapII CCGG 1 cut(s) 167
Hin1II CATG 6 cut(s) 375, 494, 700, 719, 815, 869
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 4 cut(s) 35, 233, 647, 731
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 642
Hpy166II GTNNAC 2 cut(s) 571, 642
Hpy188I TCNGA 5 cut(s) 70, 346, 402, 595, 861
Hpy188III TCNNGA 4 cut(s) 203, 350, 522, 852
Hpy8I GTNNAC 2 cut(s) 571, 642
HpyAV CCTTC 5 cut(s) 142, 336, 355, 523, 752
HpyCH4III ACNGT 3 cut(s) 178, 568, 774
HpyCH4V TGCA 4 cut(s) 332, 755, 778, 844
HpyF10VI GCNNNNNNNGC 4 cut(s) 491, 775, 803, 812
HpyF3I CTNAG 2 cut(s) 67, 520
Hsp92II CATG 6 cut(s) 375, 494, 700, 719, 815, 869
KpnI GGTACC 1 cut(s) 262
Ksp22I TGATCA 2 cut(s) 189, 346
Kzo9I GATC 3 cut(s) 189, 295, 346
LmnI GCTCC 4 cut(s) 205, 385, 692, 713
Lsp1109I GCAGC 4 cut(s) 344, 526, 739, 793
LweI GCATC 2 cut(s) 298, 558
MalI GATC 3 cut(s) 191, 297, 348
MboI GATC 3 cut(s) 189, 295, 346
MboII GAAGA 8 cut(s) 95, 184, 224, 227, 261, 370, 392, 552
MhlI GDGCHC 3 cut(s) 68, 109, 390
MluCI AATT 6 cut(s) 249, 301, 366, 451, 799, 826
MlyI GAGTC 1 cut(s) 740
MroXI GAANNNNTTC 1 cut(s) 442
MseI TTAA 2 cut(s) 765, 871
MslI CAYNNNNRTG 1 cut(s) 479
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 3 cut(s) 168, 255, 448
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 2 cut(s) 255, 448
MwoI GCNNNNNNNGC 4 cut(s) 491, 775, 803, 812
NciI CCSGG 1 cut(s) 168
NcoI CCATGG 2 cut(s) 371, 696
NdeII GATC 3 cut(s) 189, 295, 346
NlaIII CATG 6 cut(s) 375, 494, 700, 719, 815, 869
NlaIV GGNNCC 3 cut(s) 260, 694, 709
OliI CACNNNNGTG 1 cut(s) 479
PaeR7I CTCGAG 1 cut(s) 336
PceI AGGCCT 2 cut(s) 325, 607
PctI GAATGC 1 cut(s) 679
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 3 cut(s) 35, 233, 647
PfoI TCCNGGA 1 cut(s) 446
PkrI GCNGC 4 cut(s) 334, 516, 754, 808
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 253, 446
PspGI CCWGG 2 cut(s) 253, 446
PspN4I GGNNCC 3 cut(s) 260, 694, 709
PspXI VCTCGAGB 1 cut(s) 336
PstI CTGCAG 2 cut(s) 334, 757
PstNI CAGNNNCTG 1 cut(s) 208
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 479
SacI GAGCTC 1 cut(s) 68
SaqAI TTAA 2 cut(s) 765, 871
SatI GCNGC 4 cut(s) 333, 515, 753, 807
Sau3AI GATC 3 cut(s) 189, 295, 346
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 3 cut(s) 168, 255, 448
SduI GDGCHC 3 cut(s) 68, 109, 390
SfaNI GCATC 2 cut(s) 298, 558
SfcI CTRYAG 4 cut(s) 330, 753, 770, 787
Sfr274I CTCGAG 1 cut(s) 336
SlaI CTCGAG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 479
SmlI CTYRAG 2 cut(s) 336, 850
SmoI CTYRAG 2 cut(s) 336, 850
Sse9I AATT 6 cut(s) 249, 301, 366, 451, 799, 826
SseBI AGGCCT 2 cut(s) 325, 607
SsiI CCGC 1 cut(s) 394
SspI AATATT 1 cut(s) 442
SstI GAGCTC 1 cut(s) 68
StuI AGGCCT 2 cut(s) 325, 607
StyD4I CCNGG 3 cut(s) 166, 253, 446
StyI CCWWGG 2 cut(s) 371, 696
TaaI ACNGT 3 cut(s) 178, 568, 774
TaqI TCGA 5 cut(s) 183, 298, 337, 729, 830
TasI AATT 6 cut(s) 249, 301, 366, 451, 799, 826
TfiI GAWTC 3 cut(s) 35, 233, 647
Tru1I TTAA 2 cut(s) 765, 871
Tru9I TTAA 2 cut(s) 765, 871
TscAI CASTG 2 cut(s) 649, 799
TseI GCWGC 4 cut(s) 332, 514, 752, 806
TspDTI ATGAA 2 cut(s) 12, 37
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 2 cut(s) 649, 799
XapI RAATTY 4 cut(s) 301, 366, 451, 826
XhoI CTCGAG 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.