MD01G1146800.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0008236
Physical Location & Seq
Forward (+)
25600860 .. 25603527
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1146800.v1.1.491

Sequence Viewer

Length: 852 bp
ATGGAGACCTTGTATTTCTTCCAGGAGAGCCAGGGCTCGGAGTGGACTAAGGAGGAGAACAAGATGTTTGAGAGTGCTCTAGCTATGTTCGATGAGAAAAGCCCGGACAGGTTTCTGAGGGTGGCGGAGATGATTCCGGGGAAGACGGTGATCGACGTGATCAAGCAGTACCAGGAGCTGGAGGAAGATGTTTGTGAAATAGAATCCGGGAGGTTTCCCATTCCTCCGGGGTACCCTCAGGCTTACTTCAGATTGGAGTTGGGGGATGATCGGGATTTCGATGCTAATCGAAAGAGGCCGCTGGCGGCGGCGAGGGGTTCTGAACAGGAAAGGAGAAAGGGAATTCCATGGACACAAGAAGAACACAGGCGATTTCTGATGGGACTTCTAAAGTACGGGAAAGGGGACTGGAGAAACATCTCCCGGAATTACGTGGTCACTAAAACTCCCACACAAGTAGCAAGCCATGCTCAGAAATACTTCATGAGGCAGCATTCAGGAGGGAAAGATAAAAGGAGGCCAAGCATCCATGACATAACTACTGTCAACCTCACAAGCGATGCTCAGTCAGAAACTAACAGGCCTCCTTCAGACCAGTTTCTGCCGGAGCAGAAGTCCACTGAATCGCTGAACGAGCTACTTGACTGGAATGCGGCTGATGATGAAGGAGCTGCCATGGGTTTCGAGTCTACCCATGGCAATCTCTTTGATCCATCTCCGTATGACGTAGATGCAGATGGAATCAAGATGCAGCTGCAGAAACTATATAGTCGCGCTCATTATGCTGCTCATGCCACTCCTCAAAATTCGCTGTATCTAATGCGGTCCGCAAGACATCAGATTCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

284

Amino Acids

32.61

Weight (kDa)

5.77

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 116 - 161 5.4e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 231
AccB7I CCANNNNNTGG 1 cut(s) 178
AccI GTMKAC 1 cut(s) 689
AccII CGCG 1 cut(s) 774
AciI CCGC 7 cut(s) 125, 299, 305, 308, 653, 823, 828
AclWI GGATC 1 cut(s) 704
AcsI RAATTY 2 cut(s) 342, 805
AcuI CTGAAG 2 cut(s) 232, 573
AfaI GTAC 3 cut(s) 170, 233, 395
AfiI CCNNNNNNNGG 2 cut(s) 37, 178
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 3 cut(s) 21, 30, 171
AluBI AGCT 5 cut(s) 83, 178, 637, 671, 754
AluI AGCT 5 cut(s) 83, 178, 637, 671, 754
Alw21I GWGCWC 1 cut(s) 79
AlwI GGATC 1 cut(s) 704
AlwNI CAGNNNCTG 2 cut(s) 178, 601
AoxI GGCC 3 cut(s) 296, 518, 581
ApeKI GCWGC 5 cut(s) 490, 671, 751, 754, 785
ApoI RAATTY 2 cut(s) 342, 805
Asp700I GAANNNNTTC 1 cut(s) 479
Asp718I GGTACC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 776
AspS9I GGNCC 1 cut(s) 825
AsuC2I CCSGG 5 cut(s) 104, 138, 208, 228, 424
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 1 cut(s) 825
AxyI CCTNAGG 1 cut(s) 237
BanI GGYRCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 5 cut(s) 502, 658, 741, 763, 772
BccI CCATC 3 cut(s) 373, 721, 731
BciT130I CCWGG 3 cut(s) 23, 32, 173
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 5 cut(s) 104, 138, 208, 228, 424
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 755
BisI GCNGC 9 cut(s) 299, 306, 309, 491, 654, 672, 752, 755, 786
BlsI GCNGC 9 cut(s) 300, 307, 310, 492, 655, 673, 753, 756, 787
Bme1390I CCNGG 8 cut(s) 23, 32, 104, 138, 173, 208, 228, 424
Bme18I GGWCC 1 cut(s) 825
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 825
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 8 cut(s) 23, 32, 104, 138, 173, 208, 228, 424
BmsI GCATC 5 cut(s) 271, 534, 550, 721, 738
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 2 cut(s) 200, 430
BpuMI CCSGG 5 cut(s) 104, 138, 208, 228, 424
BsaAI YACGTR 1 cut(s) 433
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 6 cut(s) 31, 137, 227, 347, 675, 694
BsaXI ACNNNNNCTCC 5 cut(s) 26, 430, 460, 599, 629
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 178
Bse1I ACTGG 3 cut(s) 413, 595, 650
Bse21I CCTNAGG 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 3 cut(s) 23, 32, 173
BseDI CCNNGG 6 cut(s) 31, 137, 227, 347, 675, 694
BseGI GGATG 2 cut(s) 271, 525
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 37, 178
BseMII CTCAG 4 cut(s) 107, 251, 485, 578
BseNI ACTGG 3 cut(s) 413, 595, 650
BseRI GAGGAG 2 cut(s) 68, 789
BseXI GCAGC 5 cut(s) 502, 658, 741, 763, 772
Bsh1236I CGCG 1 cut(s) 774
BshFI GGCC 3 cut(s) 298, 520, 583
BshNI GGYRCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 6 cut(s) 104, 137, 207, 227, 424, 605
BslFI GGGAC 2 cut(s) 396, 419
BslI CCNNNNNNNGG 2 cut(s) 37, 178
BsmFI GGGAC 2 cut(s) 396, 419
BsmI GAATGC 2 cut(s) 493, 655
BsnI GGCC 3 cut(s) 298, 520, 583
Bsp1286I GDGCHC 2 cut(s) 38, 79
Bsp143I GATC 4 cut(s) 150, 159, 268, 709
Bsp19I CCATGG 3 cut(s) 347, 675, 694
BspACI CCGC 7 cut(s) 125, 299, 305, 308, 653, 823, 828
BspANI GGCC 3 cut(s) 298, 520, 583
BspCNI CTCAG 4 cut(s) 108, 250, 484, 577
BspFNI CGCG 1 cut(s) 774
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 233
BspMAI CTGCAG 1 cut(s) 759
BspPI GGATC 1 cut(s) 704
BspT107I GGYRCC 1 cut(s) 231
BsrI ACTGG 3 cut(s) 413, 595, 650
BssECI CCNNGG 6 cut(s) 31, 137, 227, 347, 675, 694
BssMI GATC 4 cut(s) 150, 159, 268, 709
BssT1I CCWWGG 3 cut(s) 347, 675, 694
Bst2UI CCWGG 3 cut(s) 23, 32, 173
Bst4CI ACNGT 2 cut(s) 148, 544
BstAPI GCANNNNNTGC 1 cut(s) 467
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 2 cut(s) 303, 463
BstDEI CTNAG 5 cut(s) 48, 116, 237, 471, 564
BstDSI CCRYGG 3 cut(s) 347, 675, 694
BstF5I GGATG 2 cut(s) 271, 525
BstFNI CGCG 1 cut(s) 774
BstHHI GCGC 1 cut(s) 776
BstKTI GATC 4 cut(s) 153, 162, 271, 712
BstMBI GATC 4 cut(s) 150, 159, 268, 709
BstMWI GCNNNNNNNGC 4 cut(s) 467, 634, 782, 791
BstNI CCWGG 3 cut(s) 23, 32, 173
BstSCI CCNGG 8 cut(s) 21, 30, 102, 136, 171, 206, 226, 422
BstSFI CTRYAG 1 cut(s) 755
BstUI CGCG 1 cut(s) 774
BstV1I GCAGC 5 cut(s) 502, 658, 741, 763, 772
BstV2I GAAGAC 1 cut(s) 149
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 3 cut(s) 298, 520, 583
BtgI CCRYGG 3 cut(s) 347, 675, 694
BtgZI GCGATG 1 cut(s) 573
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 2 cut(s) 271, 525
BtsIMutI CAGTG 1 cut(s) 618
Cac8I GCNNGC 2 cut(s) 303, 463
CaiI CAGNNNCTG 2 cut(s) 178, 601
CciI TCATGA 1 cut(s) 483
CfoI GCGC 1 cut(s) 776
Cfr13I GGNCC 1 cut(s) 825
CpoI CGGWCCG 1 cut(s) 825
Csp6I GTAC 3 cut(s) 169, 232, 394
CspI CGGWCCG 1 cut(s) 825
CviAII CATG 8 cut(s) 348, 467, 484, 530, 676, 695, 791, 845
CviQI GTAC 3 cut(s) 169, 232, 394
DdeI CTNAG 5 cut(s) 48, 116, 237, 471, 564
DpnI GATC 4 cut(s) 152, 161, 270, 711
DpnII GATC 4 cut(s) 150, 159, 268, 709
EciI GGCGGA 1 cut(s) 140
Eco130I CCWWGG 3 cut(s) 347, 675, 694
Eco147I AGGCCT 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 825
Eco57I CTGAAG 2 cut(s) 232, 573
Eco81I CCTNAGG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 342
EcoRII CCWGG 3 cut(s) 21, 30, 171
EcoT14I CCWWGG 3 cut(s) 347, 675, 694
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 3 cut(s) 347, 675, 694
FaeI CATG 8 cut(s) 351, 470, 487, 533, 679, 698, 794, 848
FaqI GGGAC 2 cut(s) 396, 419
FatI CATG 8 cut(s) 347, 466, 483, 529, 675, 694, 790, 844
FbaI TGATCA 1 cut(s) 159
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 9 cut(s) 299, 306, 309, 491, 654, 672, 752, 755, 786
FokI GGATG 2 cut(s) 278, 512
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 9 cut(s) 299, 306, 309, 491, 654, 672, 752, 755, 786
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 775
GluI GCNGC 9 cut(s) 299, 306, 309, 491, 654, 672, 752, 755, 786
GsuI CTGGAG 2 cut(s) 200, 430
HaeIII GGCC 3 cut(s) 298, 520, 583
HapII CCGG 6 cut(s) 104, 137, 207, 227, 424, 605
HhaI GCGC 1 cut(s) 776
Hin1II CATG 8 cut(s) 351, 470, 487, 533, 679, 698, 794, 848
Hin6I GCGC 1 cut(s) 774
HinP1I GCGC 1 cut(s) 774
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 6 cut(s) 133, 203, 623, 686, 741, 841
HpaII CCGG 6 cut(s) 104, 137, 207, 227, 424, 605
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 4 cut(s) 45, 547, 618, 690
Hpy188I TCNGA 9 cut(s) 40, 117, 251, 322, 378, 474, 571, 592, 840
Hpy188III TCNNGA 4 cut(s) 272, 484, 498, 745
Hpy8I GTNNAC 4 cut(s) 45, 547, 618, 690
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 597, 659
HpyCH4III ACNGT 2 cut(s) 148, 544
HpyCH4IV ACGT 3 cut(s) 156, 432, 726
HpyCH4V TGCA 3 cut(s) 734, 751, 757
HpyF10VI GCNNNNNNNGC 4 cut(s) 467, 634, 782, 791
HpyF3I CTNAG 5 cut(s) 48, 116, 237, 471, 564
HpySE526I ACGT 3 cut(s) 156, 432, 726
Hsp92II CATG 8 cut(s) 351, 470, 487, 533, 679, 698, 794, 848
HspAI GCGC 1 cut(s) 774
KpnI GGTACC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 4 cut(s) 150, 159, 268, 709
LmnI GCTCC 3 cut(s) 175, 607, 668
Lsp1109I GCAGC 5 cut(s) 502, 658, 741, 763, 772
LweI GCATC 5 cut(s) 271, 534, 550, 721, 738
MaeI CTAG 1 cut(s) 80
MaeII ACGT 3 cut(s) 156, 432, 726
MaeIII GTNAC 1 cut(s) 436
MalI GATC 4 cut(s) 152, 161, 270, 711
MboI GATC 4 cut(s) 150, 159, 268, 709
MboII GAAGA 4 cut(s) 10, 154, 197, 371
MhlI GDGCHC 2 cut(s) 38, 79
MluCI AATT 3 cut(s) 342, 427, 805
MlyI GAGTC 1 cut(s) 695
MroXI GAANNNNTTC 1 cut(s) 479
MspA1I CMGCKG 2 cut(s) 301, 754
MspI CCGG 6 cut(s) 104, 137, 207, 227, 424, 605
MspR9I CCNGG 8 cut(s) 23, 32, 104, 138, 173, 208, 228, 424
Mva1269I GAATGC 2 cut(s) 493, 655
MvaI CCWGG 3 cut(s) 23, 32, 173
MvnI CGCG 1 cut(s) 774
MwoI GCNNNNNNNGC 4 cut(s) 467, 634, 782, 791
NciI CCSGG 5 cut(s) 104, 138, 208, 228, 424
NcoI CCATGG 3 cut(s) 347, 675, 694
NdeII GATC 4 cut(s) 150, 159, 268, 709
NlaIII CATG 8 cut(s) 351, 470, 487, 533, 679, 698, 794, 848
NlaIV GGNNCC 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 436
PagI TCATGA 1 cut(s) 483
PceI AGGCCT 1 cut(s) 583
PctI GAATGC 2 cut(s) 493, 655
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 5 cut(s) 133, 203, 623, 741, 841
PflMI CCANNNNNTGG 1 cut(s) 178
PfoI TCCNGGA 3 cut(s) 21, 206, 422
PkrI GCNGC 9 cut(s) 300, 307, 310, 492, 655, 673, 753, 756, 787
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
Ppu21I YACGTR 1 cut(s) 433
Psp6I CCWGG 3 cut(s) 21, 30, 171
PspGI CCWGG 3 cut(s) 21, 30, 171
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 825
PstI CTGCAG 1 cut(s) 759
PstNI CAGNNNCTG 2 cut(s) 178, 601
PvuII CAGCTG 1 cut(s) 754
RsaI GTAC 3 cut(s) 170, 233, 395
RsaNI GTAC 3 cut(s) 169, 232, 394
Rsr2I CGGWCCG 1 cut(s) 825
RsrII CGGWCCG 1 cut(s) 825
SatI GCNGC 9 cut(s) 299, 306, 309, 491, 654, 672, 752, 755, 786
Sau3AI GATC 4 cut(s) 150, 159, 268, 709
Sau96I GGNCC 1 cut(s) 825
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 8 cut(s) 23, 32, 104, 138, 173, 208, 228, 424
SduI GDGCHC 2 cut(s) 38, 79
SfaNI GCATC 5 cut(s) 271, 534, 550, 721, 738
SfcI CTRYAG 1 cut(s) 755
SinI GGWCC 1 cut(s) 825
Sse9I AATT 3 cut(s) 342, 427, 805
SseBI AGGCCT 1 cut(s) 583
SsiI CCGC 7 cut(s) 125, 299, 305, 308, 653, 823, 828
SspMI CTAG 1 cut(s) 80
StuI AGGCCT 1 cut(s) 583
StyD4I CCNGG 8 cut(s) 21, 30, 102, 136, 171, 206, 226, 422
StyI CCWWGG 3 cut(s) 347, 675, 694
TaaI ACNGT 2 cut(s) 148, 544
TaiI ACGT 3 cut(s) 159, 435, 729
TaqI TCGA 5 cut(s) 90, 153, 279, 289, 684
TasI AATT 3 cut(s) 342, 427, 805
TauI GCSGC 4 cut(s) 301, 308, 311, 656
TfiI GAWTC 5 cut(s) 133, 203, 623, 741, 841
TscAI CASTG 1 cut(s) 625
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 5 cut(s) 490, 671, 751, 754, 785
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 472, 678, 833
TspGWI ACGGA 1 cut(s) 708
TspRI CASTG 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 825
XapI RAATTY 2 cut(s) 342, 805
XmiI GTMKAC 1 cut(s) 689
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.