FvH4_7g23990
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008236
Physical Location & Seq
Forward (+)
18585439 .. 18588328
2890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23990.t2

Sequence Viewer

Length: 915 bp
ATGCAAACTCTGTACCCAGCTTCATACATGGCTGATACTAATTGGTTTTTGCAAGAGAGCCAGAGCTCGGATTGGACTAAAGAAGAGAACAAGCTATTTGAGAGTGCTCTGGCTATCTATGATGAGAAAACGCCGGACCGGTGGGTGAAGATTGCGAGGATGATTCCGGGGAAGACGGTTTTCGATGTGTTCAAGCAGTACAAGGAGCTGGAAGATGATGTTACTAACATAGAAGCTGGGCTGGTTGAAATTCCGGGGTACCAGCAGACGTCTGCTTTCACATTGGAGTTGGTGGATGACCAGAATTTCGATGCTAATCGAAAGAGGTCTGCAGCAGCTAGAGGTTCTGATCAGGAGAGGAAGAAGGGGATTCCTTGGACTGAAGATGAGCATCTGCGGTTTCTGAAGGGACTTCTACAATATGGGAAAGGGGATTGGAGAAGTATCTCCAGGAATTTTGTTATGTCTAAAACTCCAACTCAAGTTGCTAGCCATGCTCAGAAATACTTTATGAGGCAACACTCGGGAGGAAAAGATAAAAGGAGACCTAGCATCCATGATATAACGACTGTCAACCTCACGAGCACTACCACTACTAGTCCATCACAAAACAATAATAGGTCTCCTTTAGACCAGTCTCCACCACCAGAGCACAACAGCAAATCCACTGAATCACCAAGAGTCGTACTTGACTGGAATATTAGGCCTAATGATGGAGTAGCAGGAGCTATGATCTTTGGCGCAACACATGGCGATCTTTTTGAGTCATCGTCTCCATATGATGTTGGATCCCCAGAGGACCTTAAGTTACATTGGCAGAACCTATATGCCAGTACCACTCATTATGCTGCTCATGCTAGATCACCGAGTTCGATGTATCTAATGCACCCCTCAAGACATCAGATACATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

305

Amino Acids

34.57

Weight (kDa)

6.46

Isoelectric Point (pI)

65.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 24 - 63 6.3e-06 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 24 - 71 1.9e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 125 - 170 3.5e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 272
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AciI CCGC 1 cut(s) 397
AclWI GGATC 2 cut(s) 783, 796
AcsI RAATTY 3 cut(s) 249, 304, 454
AcuI CTGAAG 2 cut(s) 402, 425
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 5 cut(s) 14, 200, 260, 687, 835
AfiI CCNNNNNNNGG 2 cut(s) 67, 713
AflII CTTAAG 1 cut(s) 803
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 2 cut(s) 193, 248
AhlI ACTAGT 1 cut(s) 596
AjnI CCWGG 1 cut(s) 449
AluBI AGCT 7 cut(s) 20, 66, 94, 208, 236, 338, 728
AluI AGCT 7 cut(s) 20, 66, 94, 208, 236, 338, 728
Alw21I GWGCWC 4 cut(s) 68, 109, 587, 654
Alw26I GTCTC 4 cut(s) 538, 627, 642, 777
AlwI GGATC 2 cut(s) 783, 796
Ama87I CYCGRG 1 cut(s) 523
AoxI GGCC 1 cut(s) 704
ApeKI GCWGC 3 cut(s) 332, 335, 848
ApoI RAATTY 3 cut(s) 249, 304, 454
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AsiGI ACCGGT 1 cut(s) 138
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 2 cut(s) 136, 799
AsuC2I CCSGG 2 cut(s) 168, 255
AsuHPI GGTGA 3 cut(s) 157, 666, 855
AsuNHI GCTAGC 1 cut(s) 488
AvaI CYCGRG 1 cut(s) 523
AvaII GGWCC 2 cut(s) 136, 799
BamHI GGATCC 1 cut(s) 788
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 68
BauI CACGAG 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 4 cut(s) 68, 109, 587, 654
BbvI GCAGC 3 cut(s) 344, 347, 835
BccI CCATC 2 cut(s) 610, 707
BciT130I CCWGG 1 cut(s) 451
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 2 cut(s) 168, 255
BcoDI GTCTC 4 cut(s) 538, 627, 642, 777
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 5 cut(s) 339, 489, 549, 597, 858
BfmI CTRYAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 803
BisI GCNGC 3 cut(s) 333, 336, 849
BlsI GCNGC 3 cut(s) 334, 337, 850
Bme1390I CCNGG 3 cut(s) 168, 255, 451
Bme18I GGWCC 2 cut(s) 136, 799
BmeT110I CYCGRG 1 cut(s) 523
BmgT120I GGNCC 2 cut(s) 136, 799
BmiI GGNNCC 2 cut(s) 260, 790
BmrFI CCNGG 3 cut(s) 168, 255, 451
BmsI GCATC 3 cut(s) 301, 400, 561
BmtI GCTAGC 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 433
BpuEI CTTGAG 2 cut(s) 465, 877
BpuMI CCSGG 2 cut(s) 168, 255
BsaBI GATNNNNATC 2 cut(s) 315, 390
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 2 cut(s) 538, 627
BsaJI CCNNGG 3 cut(s) 167, 254, 374
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 713
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 3 cut(s) 634, 698, 831
Bse8I GATNNNNATC 2 cut(s) 315, 390
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 3 cut(s) 167, 254, 374
BseGI GGATG 3 cut(s) 165, 301, 552
BseJI GATNNNNATC 2 cut(s) 315, 390
BseLI CCNNNNNNNGG 2 cut(s) 67, 713
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 3 cut(s) 634, 698, 831
BseXI GCAGC 3 cut(s) 344, 347, 835
BseYI CCCAGC 2 cut(s) 16, 236
BshFI GGCC 1 cut(s) 706
BshNI GGYRCC 1 cut(s) 258
BshTI ACCGGT 1 cut(s) 138
BsiHKAI GWGCWC 4 cut(s) 68, 109, 587, 654
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 4 cut(s) 134, 139, 167, 254
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 67, 713
BsmAI GTCTC 4 cut(s) 538, 627, 642, 777
BsmBI CGTCTC 1 cut(s) 777
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 1 cut(s) 706
Bso31I GGTCTC 2 cut(s) 538, 627
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 4 cut(s) 68, 109, 587, 654
Bsp143I GATC 5 cut(s) 349, 732, 754, 788, 860
BspACI CCGC 1 cut(s) 397
BspANI GGCC 1 cut(s) 706
BspCNI CTCAG 1 cut(s) 511
BspLI GGNNCC 2 cut(s) 260, 790
BspMAI CTGCAG 1 cut(s) 334
BspOI GCTAGC 1 cut(s) 492
BspPI GGATC 2 cut(s) 783, 796
BspT107I GGYRCC 1 cut(s) 258
BspTI CTTAAG 1 cut(s) 803
BspTNI GGTCTC 2 cut(s) 538, 627
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 3 cut(s) 634, 698, 831
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 167, 254, 374
BssMI GATC 5 cut(s) 349, 732, 754, 788, 860
BssNI GRCGYC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 580
BssT1I CCWWGG 1 cut(s) 374
Bst2BI CACGAG 1 cut(s) 580
Bst2UI CCWGG 1 cut(s) 451
Bst4CI ACNGT 2 cut(s) 178, 571
Bst6I CTCTTC 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 269
BstAFI CTTAAG 1 cut(s) 803
BstC8I GCNNGC 1 cut(s) 490
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 3 cut(s) 165, 301, 552
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 5 cut(s) 352, 735, 757, 791, 863
BstMAI GTCTC 4 cut(s) 538, 627, 642, 777
BstMBI GATC 5 cut(s) 349, 732, 754, 788, 860
BstMWI GCNNNNNNNGC 2 cut(s) 494, 854
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 3 cut(s) 166, 253, 449
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 3 cut(s) 344, 347, 835
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 788
BstYI RGATCY 1 cut(s) 788
BsuRI GGCC 1 cut(s) 706
BtsCI GGATG 3 cut(s) 165, 301, 552
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 1 cut(s) 490
CfoI GCGC 1 cut(s) 743
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 136, 799
CpoI CGGWCCG 1 cut(s) 136
Csp6I GTAC 5 cut(s) 13, 199, 259, 686, 834
CspAI ACCGGT 1 cut(s) 138
CspI CGGWCCG 1 cut(s) 136
CviAII CATG 6 cut(s) 28, 494, 557, 749, 854, 908
CviQI GTAC 5 cut(s) 13, 199, 259, 686, 834
DdeI CTNAG 1 cut(s) 498
DpnI GATC 5 cut(s) 351, 734, 756, 790, 862
DpnII GATC 5 cut(s) 349, 732, 754, 788, 860
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 374
Eco147I AGGCCT 1 cut(s) 706
Eco24I GRGCYC 1 cut(s) 68
Eco31I GGTCTC 2 cut(s) 538, 627
Eco47I GGWCC 2 cut(s) 136, 799
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 402, 425
Eco88I CYCGRG 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 374
Esp3I CGTCTC 1 cut(s) 777
FaeI CATG 6 cut(s) 31, 497, 560, 752, 857, 911
FaqI GGGAC 1 cut(s) 423
FatI CATG 6 cut(s) 27, 493, 556, 748, 853, 907
FauNDI CATATG 1 cut(s) 778
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 3 cut(s) 333, 336, 849
FokI GGATG 3 cut(s) 172, 308, 539
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 333, 336, 849
FspBI CTAG 5 cut(s) 339, 489, 549, 597, 858
GlaI GCGC 1 cut(s) 742
GluI GCNGC 3 cut(s) 333, 336, 849
GsaI CCCAGC 2 cut(s) 20, 240
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 1 cut(s) 706
HapII CCGG 4 cut(s) 134, 139, 167, 254
HhaI GCGC 1 cut(s) 743
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 6 cut(s) 31, 497, 560, 752, 857, 911
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 5 cut(s) 163, 370, 671, 681, 764
HpaII CCGG 4 cut(s) 134, 139, 167, 254
HphI GGTGA 3 cut(s) 157, 666, 855
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 5 cut(s) 70, 349, 405, 501, 903
Hpy188III TCNNGA 4 cut(s) 353, 525, 580, 894
Hpy8I GTNNAC 1 cut(s) 574
HpyAV CCTTC 2 cut(s) 358, 400
HpyCH4III ACNGT 2 cut(s) 178, 571
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 4, 52, 332, 886
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 854
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 1 cut(s) 269
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 6 cut(s) 31, 497, 560, 752, 857, 911
HspAI GCGC 1 cut(s) 741
KpnI GGTACC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 5 cut(s) 349, 732, 754, 788, 860
LmnI GCTCC 2 cut(s) 205, 725
Lsp1109I GCAGC 3 cut(s) 344, 347, 835
LweI GCATC 3 cut(s) 301, 400, 561
MaeI CTAG 5 cut(s) 339, 489, 549, 597, 858
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 220, 807
MalI GATC 5 cut(s) 351, 734, 756, 790, 862
MboI GATC 5 cut(s) 349, 732, 754, 788, 860
MboII GAAGA 6 cut(s) 95, 160, 184, 224, 373, 395
MflI RGATCY 1 cut(s) 788
MhlI GDGCHC 4 cut(s) 68, 109, 587, 654
MluCI AATT 4 cut(s) 40, 249, 304, 454
MlyI GAGTC 2 cut(s) 690, 773
MmeI TCCRAC 2 cut(s) 500, 766
MnlI CCTC 9 cut(s) 150, 318, 335, 351, 507, 521, 587, 790, 901
MseI TTAA 1 cut(s) 804
MspCI CTTAAG 1 cut(s) 803
MspI CCGG 4 cut(s) 134, 139, 167, 254
MspR9I CCNGG 3 cut(s) 168, 255, 451
MvaI CCWGG 1 cut(s) 451
MwoI GCNNNNNNNGC 2 cut(s) 494, 854
NciI CCSGG 2 cut(s) 168, 255
NdeI CATATG 1 cut(s) 778
NdeII GATC 5 cut(s) 349, 732, 754, 788, 860
NheI GCTAGC 1 cut(s) 488
NlaIII CATG 6 cut(s) 31, 497, 560, 752, 857, 911
NlaIV GGNNCC 2 cut(s) 260, 790
PceI AGGCCT 1 cut(s) 706
PfeI GAWTC 3 cut(s) 163, 370, 671
PfoI TCCNGGA 1 cut(s) 449
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 3 cut(s) 334, 337, 850
PleI GAGTC 2 cut(s) 689, 772
PpsI GAGTC 2 cut(s) 689, 772
PpuMI RGGWCCY 1 cut(s) 799
Psp124BI GAGCTC 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 799
Psp6I CCWGG 1 cut(s) 449
PspFI CCCAGC 2 cut(s) 16, 236
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 2 cut(s) 260, 790
PspPI GGNCC 2 cut(s) 136, 799
PspPPI RGGWCCY 1 cut(s) 799
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 1 cut(s) 788
RsaI GTAC 5 cut(s) 14, 200, 260, 687, 835
RsaNI GTAC 5 cut(s) 13, 199, 259, 686, 834
Rsr2I CGGWCCG 1 cut(s) 136
RsrII CGGWCCG 1 cut(s) 136
SacI GAGCTC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 3 cut(s) 333, 336, 849
Sau3AI GATC 5 cut(s) 349, 732, 754, 788, 860
Sau96I GGNCC 2 cut(s) 136, 799
SchI GAGTC 2 cut(s) 690, 773
ScrFI CCNGG 3 cut(s) 168, 255, 451
SduI GDGCHC 4 cut(s) 68, 109, 587, 654
SfaNI GCATC 3 cut(s) 301, 400, 561
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 2 cut(s) 136, 799
SmlI CTYRAG 3 cut(s) 480, 803, 892
SmoI CTYRAG 3 cut(s) 480, 803, 892
SpeI ACTAGT 1 cut(s) 596
Sse9I AATT 4 cut(s) 40, 249, 304, 454
SseBI AGGCCT 1 cut(s) 706
SsiI CCGC 1 cut(s) 397
SspI AATATT 1 cut(s) 700
SspMI CTAG 5 cut(s) 339, 489, 549, 597, 858
SstI GAGCTC 1 cut(s) 68
StuI AGGCCT 1 cut(s) 706
StyD4I CCNGG 3 cut(s) 166, 253, 449
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 2 cut(s) 178, 571
TaiI ACGT 1 cut(s) 272
TaqI TCGA 4 cut(s) 183, 309, 319, 872
TasI AATT 4 cut(s) 40, 249, 304, 454
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 3 cut(s) 163, 370, 671
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 1 cut(s) 673
TseI GCWGC 3 cut(s) 332, 335, 848
TspDTI ATGAA 1 cut(s) 12
TspRI CASTG 1 cut(s) 673
Vha464I CTTAAG 1 cut(s) 803
VpaK11BI GGWCC 2 cut(s) 136, 799
XapI RAATTY 3 cut(s) 249, 304, 454
XspI CTAG 5 cut(s) 339, 489, 549, 597, 858
ZraI GACGTC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.