Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008236

Physical Location & Seq

Genomic Coordinates Forward (+)

59186639 .. 59189081

Gene Structure 2443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59358

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCAAACTCTGTACCCACCTTCATATATGGCCGATACTAATTGGTTTGTCCAAGGGAGCCAGAGCTCAGATTGGACTAGAGAAGAGAACAAGCAATTTGAGAGAGCTCTGGCTATCTACGATGAGAAAACGCCGGACCGGTGGGGAATGATTGCGTTGATGATTCCGGGGAAGACGGCTGTCGATGTGTTCAAGCAGTACAAGGAGCTGGAAGATGATGTTAGTGACATAGAAGCAGGGCTGGTCGAGATTCCAGGGTACCAACAGCCGTCTTCTTTCACATTGGAGTTGGTGGATGACCGAAATTTCGATGCTAACCGAAAGAGGTCTGCAGCAACTAGAGGTTCTGATCAGGAGAGGAAGAAGGGGATTCCTTGGACAGAAGATGAGCATCTGCGGTTTCTGAAGGGACTTCTAAAATATGGGAAAGGGGATTGGAGAAATATCTCCAGGAACTTTGTTTTTTCTAAAACTCCAACTCAAGTTGCTAGCCATGCTCAGAAATACTTTATGAGGCAACACTCAGGAGGAAAAGATAAAAGGAGACCTAGCATCCATGATATAACAACTGTCAACCTCACGAGCACTACCACTACTAGTCCATCACAGAATAATAATAGGCCTCCTTTAGACCAGTCTCCACCACCAGAGCACAATAACAAATCCACTGAATCACCAAGAGTCGTACCCGACTGGAATATGCCTAATGATGGATTAGCAGGAGCTATGATCTTTGGCGCAACACATGGCGATCTTTTTGAGTCATCGTCTCCATTTGATGTTGGATCTCCAGACGATCTTAAGCTACATTGGCAAAAACTTTACGCAAGTGCCACTCATTATGCTGCTCATGCTAGATCCCCGAGTTCAATGTATCTAATGCAGACCTCAAGACATCAGATACATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

303

Amino Acids

34.41

Weight (kDa)

6.6

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	24 - 71	5.8e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	125 - 170	4.4e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11280 AT3G11280 AT5G05790 AT5G05790
fragaria_vesca	FvH4_7g23990 FvH4_7g23990 FvH4_7g23990
malus_domestica	MD01G1146800.v1.1 MD07G1213500.v1.1
prunus_persica	Prupe.2G245900_v2.0.a1 Prupe.2G245900_v2.0.a1
pyrus_communis	pycom01g16600 pycom07g19630
rosa_chinensis	RchiOBHm_Chr1g0369341
rosa_laevigata	RLG00000027136
rosa_multiflora	Rmu_sc0001482.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287720
rosa_rugosa	Rorug01G0349700
rosa_samantha	Rh1AG356900 Rh1BG320900 Rh1CG334900 Rh1DG351600
rosa_wichuraiana	Rw1G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	258
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	2 cut(s)	793, 852
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	4 cut(s)	14, 200, 260, 687
AfiI	CCNNNNNNNGG	1 cut(s)	710
AflII	CTTAAG	1 cut(s)	800
AgeI	ACCGGT	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	193, 870
AhlI	ACTAGT	1 cut(s)	596
AjnI	CCWGG	2 cut(s)	253, 449
AluBI	AGCT	5 cut(s)	66, 107, 208, 725, 805
AluI	AGCT	5 cut(s)	66, 107, 208, 725, 805
Alw21I	GWGCWC	4 cut(s)	68, 109, 587, 654
Alw26I	GTCTC	3 cut(s)	538, 642, 774
AlwI	GGATC	2 cut(s)	793, 852
Ama87I	CYCGRG	1 cut(s)	862
AoxI	GGCC	2 cut(s)	30, 620
ApeKI	GCWGC	2 cut(s)	332, 845
ApoI	RAATTY	1 cut(s)	304
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AsiGI	ACCGGT	1 cut(s)	138
Asp718I	GGTACC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	666
AsuNHI	GCTAGC	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	862
AvaII	GGWCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	2 cut(s)	68, 109
BauI	CACGAG	1 cut(s)	580
BbsI	GAAGAC	2 cut(s)	179, 264
Bbv12I	GWGCWC	4 cut(s)	68, 109, 587, 654
BbvI	GCAGC	2 cut(s)	344, 832
BccI	CCATC	2 cut(s)	610, 704
BceAI	ACGGC	2 cut(s)	192, 253
BciT130I	CCWGG	2 cut(s)	255, 451
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	3 cut(s)	538, 642, 774
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	6 cut(s)	78, 339, 489, 549, 597, 855
BfmI	CTRYAG	1 cut(s)	330
BfrI	CTTAAG	1 cut(s)	800
BisI	GCNGC	2 cut(s)	333, 846
BlsI	GCNGC	2 cut(s)	334, 847
Bme1390I	CCNGG	3 cut(s)	168, 255, 451
Bme18I	GGWCC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	862
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	59, 260
BmrFI	CCNGG	3 cut(s)	168, 255, 451
BmsI	GCATC	3 cut(s)	301, 400, 561
BmtI	GCTAGC	1 cut(s)	492
BoxI	GACNNNNGTC	1 cut(s)	179
BpiI	GAAGAC	2 cut(s)	179, 264
BpmI	CTGGAG	2 cut(s)	433, 774
BpuEI	CTTGAG	2 cut(s)	465, 874
BpuMI	CCSGG	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	4 cut(s)	52, 167, 254, 374
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
Bse118I	RCCGGY	1 cut(s)	138
Bse1I	ACTGG	2 cut(s)	634, 698
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	255, 451
BseDI	CCNNGG	4 cut(s)	52, 167, 254, 374
BseGI	GGATG	2 cut(s)	301, 552
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseMII	CTCAG	3 cut(s)	81, 512, 537
BseNI	ACTGG	2 cut(s)	634, 698
BseXI	GCAGC	2 cut(s)	344, 832
BshFI	GGCC	2 cut(s)	32, 622
BshNI	GGYRCC	1 cut(s)	258
BshTI	ACCGGT	1 cut(s)	138
BsiHKAI	GWGCWC	4 cut(s)	68, 109, 587, 654
BsiHKCI	CYCGRG	1 cut(s)	862
BsiSI	CCGG	3 cut(s)	134, 139, 167
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmAI	GTCTC	3 cut(s)	538, 642, 774
BsmBI	CGTCTC	1 cut(s)	774
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	2 cut(s)	32, 622
Bso31I	GGTCTC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	862
Bsp1286I	GDGCHC	4 cut(s)	68, 109, 587, 654
Bsp143I	GATC	6 cut(s)	349, 729, 751, 785, 796, 857
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	2 cut(s)	32, 622
BspCNI	CTCAG	3 cut(s)	80, 511, 536
BspLI	GGNNCC	2 cut(s)	59, 260
BspMAI	CTGCAG	1 cut(s)	334
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	2 cut(s)	793, 852
BspT107I	GGYRCC	1 cut(s)	258
BspTI	CTTAAG	1 cut(s)	800
BspTNI	GGTCTC	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	138
BsrI	ACTGG	2 cut(s)	634, 698
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	4 cut(s)	52, 167, 254, 374
BssMI	GATC	6 cut(s)	349, 729, 751, 785, 796, 857
BssSI	CACGAG	1 cut(s)	580
BssT1I	CCWWGG	2 cut(s)	52, 374
Bst2BI	CACGAG	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	255, 451
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	800
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	3 cut(s)	67, 498, 523
BstF5I	GGATG	2 cut(s)	301, 552
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	6 cut(s)	352, 732, 754, 788, 799, 860
BstMAI	GTCTC	3 cut(s)	538, 642, 774
BstMBI	GATC	6 cut(s)	349, 729, 751, 785, 796, 857
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 811, 851
BstNI	CCWGG	2 cut(s)	255, 451
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	3 cut(s)	166, 253, 449
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	344, 832
BstV2I	GAAGAC	2 cut(s)	179, 264
BstX2I	RGATCY	2 cut(s)	785, 857
BstYI	RGATCY	2 cut(s)	785, 857
BsuRI	GGCC	2 cut(s)	32, 622
BtsCI	GGATG	2 cut(s)	301, 552
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	1 cut(s)	490
CfoI	GCGC	1 cut(s)	740
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	136
CpoI	CGGWCCG	1 cut(s)	136
Csp6I	GTAC	4 cut(s)	13, 199, 259, 686
CspAI	ACCGGT	1 cut(s)	138
CspI	CGGWCCG	1 cut(s)	136
CviAII	CATG	5 cut(s)	494, 557, 746, 851, 905
CviQI	GTAC	4 cut(s)	13, 199, 259, 686
DdeI	CTNAG	3 cut(s)	67, 498, 523
DpnI	GATC	6 cut(s)	351, 731, 753, 787, 798, 859
DpnII	GATC	6 cut(s)	349, 729, 751, 785, 796, 857
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Ecl136II	GAGCTC	2 cut(s)	66, 107
Eco130I	CCWWGG	2 cut(s)	52, 374
Eco147I	AGGCCT	1 cut(s)	622
Eco24I	GRGCYC	2 cut(s)	68, 109
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	136
Eco53kI	GAGCTC	2 cut(s)	66, 107
Eco57I	CTGAAG	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	862
EcoICRI	GAGCTC	2 cut(s)	66, 107
EcoRII	CCWGG	2 cut(s)	253, 449
EcoT14I	CCWWGG	2 cut(s)	52, 374
EcoT38I	GRGCYC	2 cut(s)	68, 109
ErhI	CCWWGG	2 cut(s)	52, 374
Esp3I	CGTCTC	1 cut(s)	774
FaeI	CATG	5 cut(s)	497, 560, 749, 854, 908
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	5 cut(s)	493, 556, 745, 850, 904
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	333, 846
FokI	GGATG	2 cut(s)	308, 539
FriOI	GRGCYC	2 cut(s)	68, 109
Fsp4HI	GCNGC	2 cut(s)	333, 846
FspBI	CTAG	6 cut(s)	78, 339, 489, 549, 597, 855
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	2 cut(s)	333, 846
GsuI	CTGGAG	2 cut(s)	433, 774
HaeIII	GGCC	2 cut(s)	32, 622
HapII	CCGG	3 cut(s)	134, 139, 167
HhaI	GCGC	1 cut(s)	740
Hin1II	CATG	5 cut(s)	497, 560, 749, 854, 908
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	6 cut(s)	163, 250, 370, 671, 681, 761
HpaII	CCGG	3 cut(s)	134, 139, 167
HphI	GGTGA	1 cut(s)	666
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	5 cut(s)	70, 349, 405, 501, 900
Hpy188III	TCNNGA	6 cut(s)	247, 353, 525, 580, 791, 891
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	3 cut(s)	30, 358, 400
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	3 cut(s)	4, 332, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 811, 851
HpyF3I	CTNAG	3 cut(s)	67, 498, 523
Hsp92II	CATG	5 cut(s)	497, 560, 749, 854, 908
HspAI	GCGC	1 cut(s)	738
KpnI	GGTACC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	6 cut(s)	349, 729, 751, 785, 796, 857
LmnI	GCTCC	3 cut(s)	57, 205, 722
Lsp1109I	GCAGC	2 cut(s)	344, 832
LweI	GCATC	3 cut(s)	301, 400, 561
MaeI	CTAG	6 cut(s)	78, 339, 489, 549, 597, 855
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	6 cut(s)	351, 731, 753, 787, 798, 859
MboI	GATC	6 cut(s)	349, 729, 751, 785, 796, 857
MboII	GAAGA	6 cut(s)	95, 184, 224, 264, 373, 395
MflI	RGATCY	2 cut(s)	785, 857
MhlI	GDGCHC	4 cut(s)	68, 109, 587, 654
MluCI	AATT	3 cut(s)	40, 95, 304
MlyI	GAGTC	2 cut(s)	690, 770
MmeI	TCCRAC	2 cut(s)	500, 763
MnlI	CCTC	8 cut(s)	318, 335, 351, 507, 521, 587, 633, 898
MseI	TTAA	1 cut(s)	801
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	3 cut(s)	134, 139, 167
MspR9I	CCNGG	3 cut(s)	168, 255, 451
MvaI	CCWGG	2 cut(s)	255, 451
MwoI	GCNNNNNNNGC	3 cut(s)	494, 811, 851
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	6 cut(s)	349, 729, 751, 785, 796, 857
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	5 cut(s)	497, 560, 749, 854, 908
NlaIV	GGNNCC	2 cut(s)	59, 260
NmuCI	GTSAC	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	622
PfeI	GAWTC	4 cut(s)	163, 250, 370, 671
PfoI	TCCNGGA	1 cut(s)	449
PinAI	ACCGGT	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	334, 847
PleI	GAGTC	2 cut(s)	689, 769
PpsI	GAGTC	2 cut(s)	689, 769
PshAI	GACNNNNGTC	1 cut(s)	179
Psp124BI	GAGCTC	2 cut(s)	68, 109
Psp6I	CCWGG	2 cut(s)	253, 449
PspGI	CCWGG	2 cut(s)	253, 449
PspN4I	GGNNCC	2 cut(s)	59, 260
PspPI	GGNCC	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	2 cut(s)	785, 857
RsaI	GTAC	4 cut(s)	14, 200, 260, 687
RsaNI	GTAC	4 cut(s)	13, 199, 259, 686
Rsr2I	CGGWCCG	1 cut(s)	136
RsrII	CGGWCCG	1 cut(s)	136
SacI	GAGCTC	2 cut(s)	68, 109
SaqAI	TTAA	1 cut(s)	801
SatI	GCNGC	2 cut(s)	333, 846
Sau3AI	GATC	6 cut(s)	349, 729, 751, 785, 796, 857
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	690, 770
ScrFI	CCNGG	3 cut(s)	168, 255, 451
SduI	GDGCHC	4 cut(s)	68, 109, 587, 654
SfaNI	GCATC	3 cut(s)	301, 400, 561
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	136
SmlI	CTYRAG	3 cut(s)	480, 800, 889
SmoI	CTYRAG	3 cut(s)	480, 800, 889
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	3 cut(s)	40, 95, 304
SseBI	AGGCCT	1 cut(s)	622
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	6 cut(s)	78, 339, 489, 549, 597, 855
SstI	GAGCTC	2 cut(s)	68, 109
StuI	AGGCCT	1 cut(s)	622
StyD4I	CCNGG	3 cut(s)	166, 253, 449
StyI	CCWWGG	2 cut(s)	52, 374
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	3 cut(s)	183, 246, 309
TaqII	GACCGA	1 cut(s)	315
TasI	AATT	3 cut(s)	40, 95, 304
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	4 cut(s)	163, 250, 370, 671
Tru1I	TTAA	1 cut(s)	801
Tru9I	TTAA	1 cut(s)	801
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	2 cut(s)	332, 845
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	12
TspRI	CASTG	1 cut(s)	673
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	304
XspI	CTAG	6 cut(s)	78, 339, 489, 549, 597, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.