Rw1G031510
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0008236
Physical Location & Seq
Forward (+)
59625805 .. 59627333
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G031510.1

Sequence Viewer

Length: 903 bp
ATGCAAACTCTGTACCCACCTTCATATATGGCTGATACTAATTGGTTTGTCCAAGGGAGCCTGAGCTCAGATTGGACTAGAGAAGAGAACAAGCAATTTGAGAGAGCTCTGGCTATCTACGATGAGAAAACGCCGGACCGGTGGGGAATGATTGCGCTGATGATTCCGGGGAAGACGGCTGTCGATGTGTTCAAGCAGTACAAGGAGCTGGAAGATGATGTTAGTGACATAGAAGCAGGGCTGGTCGAGATTCCAGGGTACCAACAGCCGTCTTCTTTCACATTGGAGTTGGTGGATGACCGAAATTTCGATGCTAACCGAAAGAGGTCTGCAGCAACTAGAGGTTCTGATCAGGAGAGGAAGAAGGGGATTCCTTGGACGAAGATGAGCATCTGTGAGTTTTTTTTATTTTTTATTATTGAACATCTGCGGTTTCTGAAGGGACTTCTAAAATATGGGAAAGGGGATTGGAGAAATATCTCCAGGAACTTTAAATACTTTATGAGGCAACACTCAGGAGGAAAAGATAAAAGGAGACCTAGCATCCATGATATAACAACTGTCAACCTCACGAGCACTACCACTACTAGTCCATCACAGAATAATAATAGGCCTCCTTTAGACCAGTCTCCACCACCAGAGCACAATAACAAGTCCACTGAATCACCAAGAGTCGTACCCGACTGGAATATGCCTAATGATGGATTAGCAGGAGCTATGATCTTTGGCGCAACACATGGCGATCTTTTTGAGTCATCGTCTCCATTTGATGTTGGATCTCCAGACGATCTTAAGCTACATTGGCAAAAACTTTACGCGAGTGCCACTCATTATGCTGCTCATGCTAGATCCCCGAGTTCAATGTATCTAATGCAGACCTCAAGACATCAGATACATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

300

Amino Acids

34.29

Weight (kDa)

6.8

Isoelectric Point (pI)

58.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding_2 PF23082 24 - 71 5.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AccII CGCG 1 cut(s) 818
AciI CCGC 1 cut(s) 430
AclWI GGATC 2 cut(s) 784, 843
AcsI RAATTY 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 4 cut(s) 14, 200, 260, 678
AfiI CCNNNNNNNGG 1 cut(s) 701
AflII CTTAAG 1 cut(s) 791
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 3 cut(s) 193, 422, 861
AhlI ACTAGT 1 cut(s) 587
AjnI CCWGG 2 cut(s) 253, 482
AluBI AGCT 5 cut(s) 66, 107, 208, 716, 796
AluI AGCT 5 cut(s) 66, 107, 208, 716, 796
Alw21I GWGCWC 4 cut(s) 68, 109, 578, 645
Alw26I GTCTC 3 cut(s) 529, 633, 765
AlwI GGATC 2 cut(s) 784, 843
Ama87I CYCGRG 1 cut(s) 853
AoxI GGCC 1 cut(s) 611
ApeKI GCWGC 2 cut(s) 332, 836
ApoI RAATTY 1 cut(s) 304
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AsiGI ACCGGT 1 cut(s) 138
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 2 cut(s) 157, 731
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 657
AvaI CYCGRG 1 cut(s) 853
AvaII GGWCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 2 cut(s) 68, 109
BauI CACGAG 1 cut(s) 571
BbsI GAAGAC 2 cut(s) 179, 264
Bbv12I GWGCWC 4 cut(s) 68, 109, 578, 645
BbvI GCAGC 2 cut(s) 344, 823
BccI CCATC 2 cut(s) 601, 695
BceAI ACGGC 2 cut(s) 192, 253
BciT130I CCWGG 2 cut(s) 255, 484
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 3 cut(s) 529, 633, 765
BcuI ACTAGT 1 cut(s) 587
BfaI CTAG 5 cut(s) 78, 339, 540, 588, 846
BfmI CTRYAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 791
BisI GCNGC 2 cut(s) 333, 837
BlsI GCNGC 2 cut(s) 334, 838
Bme1390I CCNGG 3 cut(s) 168, 255, 484
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 853
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 2 cut(s) 59, 260
BmrFI CCNGG 3 cut(s) 168, 255, 484
BmsI GCATC 3 cut(s) 301, 399, 552
BoxI GACNNNNGTC 1 cut(s) 179
BpiI GAAGAC 2 cut(s) 179, 264
BplI GAGNNNNNCTC 2 cut(s) 811, 843
BpmI CTGGAG 2 cut(s) 466, 765
Bpu10I CCTNAGC 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 865
BpuMI CCSGG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 4 cut(s) 52, 167, 254, 374
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 701
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 625, 689
Bse8I GATNNNNATC 1 cut(s) 389
BseBI CCWGG 2 cut(s) 255, 484
BseDI CCNNGG 4 cut(s) 52, 167, 254, 374
BseGI GGATG 2 cut(s) 301, 543
BseJI GATNNNNATC 1 cut(s) 389
BseLI CCNNNNNNNGG 1 cut(s) 701
BseMII CTCAG 3 cut(s) 53, 81, 528
BseNI ACTGG 2 cut(s) 625, 689
BseXI GCAGC 2 cut(s) 344, 823
Bsh1236I CGCG 1 cut(s) 818
BshFI GGCC 1 cut(s) 613
BshNI GGYRCC 1 cut(s) 258
BshTI ACCGGT 1 cut(s) 138
BsiHKAI GWGCWC 4 cut(s) 68, 109, 578, 645
BsiHKCI CYCGRG 1 cut(s) 853
BsiSI CCGG 3 cut(s) 134, 139, 167
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 701
BsmAI GTCTC 3 cut(s) 529, 633, 765
BsmBI CGTCTC 1 cut(s) 765
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 1 cut(s) 613
Bso31I GGTCTC 1 cut(s) 529
BsoBI CYCGRG 1 cut(s) 853
Bsp1286I GDGCHC 4 cut(s) 68, 109, 578, 645
Bsp143I GATC 6 cut(s) 349, 720, 742, 776, 787, 848
BspACI CCGC 1 cut(s) 430
BspANI GGCC 1 cut(s) 613
BspCNI CTCAG 3 cut(s) 54, 80, 527
BspFNI CGCG 1 cut(s) 818
BspLI GGNNCC 2 cut(s) 59, 260
BspMAI CTGCAG 1 cut(s) 334
BspPI GGATC 2 cut(s) 784, 843
BspT107I GGYRCC 1 cut(s) 258
BspTI CTTAAG 1 cut(s) 791
BspTNI GGTCTC 1 cut(s) 529
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 2 cut(s) 625, 689
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 4 cut(s) 52, 167, 254, 374
BssMI GATC 6 cut(s) 349, 720, 742, 776, 787, 848
BssSI CACGAG 1 cut(s) 571
BssT1I CCWWGG 2 cut(s) 52, 374
Bst2BI CACGAG 1 cut(s) 571
Bst2UI CCWGG 2 cut(s) 255, 484
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 1 cut(s) 78
BstAFI CTTAAG 1 cut(s) 791
BstDEI CTNAG 3 cut(s) 62, 67, 514
BstF5I GGATG 2 cut(s) 301, 543
BstFNI CGCG 1 cut(s) 818
BstHHI GCGC 2 cut(s) 157, 731
BstKTI GATC 6 cut(s) 352, 723, 745, 779, 790, 851
BstMAI GTCTC 3 cut(s) 529, 633, 765
BstMBI GATC 6 cut(s) 349, 720, 742, 776, 787, 848
BstMWI GCNNNNNNNGC 2 cut(s) 802, 842
BstNI CCWGG 2 cut(s) 255, 484
BstPAI GACNNNNGTC 1 cut(s) 179
BstSCI CCNGG 3 cut(s) 166, 253, 482
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 1 cut(s) 818
BstV1I GCAGC 2 cut(s) 344, 823
BstV2I GAAGAC 2 cut(s) 179, 264
BstX2I RGATCY 2 cut(s) 776, 848
BstYI RGATCY 2 cut(s) 776, 848
BsuRI GGCC 1 cut(s) 613
BtsCI GGATG 2 cut(s) 301, 543
BtsIMutI CAGTG 1 cut(s) 657
CfoI GCGC 2 cut(s) 157, 731
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 136
CpoI CGGWCCG 1 cut(s) 136
Csp6I GTAC 4 cut(s) 13, 199, 259, 677
CspAI ACCGGT 1 cut(s) 138
CspI CGGWCCG 1 cut(s) 136
CviAII CATG 4 cut(s) 548, 737, 842, 896
CviQI GTAC 4 cut(s) 13, 199, 259, 677
DdeI CTNAG 3 cut(s) 62, 67, 514
DpnI GATC 6 cut(s) 351, 722, 744, 778, 789, 850
DpnII GATC 6 cut(s) 349, 720, 742, 776, 787, 848
DraI TTTAAA 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Ecl136II GAGCTC 2 cut(s) 66, 107
Eco130I CCWWGG 2 cut(s) 52, 374
Eco147I AGGCCT 1 cut(s) 613
Eco24I GRGCYC 2 cut(s) 68, 109
Eco31I GGTCTC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 2 cut(s) 66, 107
Eco57I CTGAAG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 853
EcoICRI GAGCTC 2 cut(s) 66, 107
EcoRII CCWGG 2 cut(s) 253, 482
EcoT14I CCWWGG 2 cut(s) 52, 374
EcoT38I GRGCYC 2 cut(s) 68, 109
ErhI CCWWGG 2 cut(s) 52, 374
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 4 cut(s) 551, 740, 845, 899
FaqI GGGAC 1 cut(s) 456
FatI CATG 4 cut(s) 547, 736, 841, 895
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 2 cut(s) 333, 837
FokI GGATG 2 cut(s) 308, 530
FriOI GRGCYC 2 cut(s) 68, 109
Fsp4HI GCNGC 2 cut(s) 333, 837
FspBI CTAG 5 cut(s) 78, 339, 540, 588, 846
GlaI GCGC 2 cut(s) 156, 730
GluI GCNGC 2 cut(s) 333, 837
GsuI CTGGAG 2 cut(s) 466, 765
HaeIII GGCC 1 cut(s) 613
HapII CCGG 3 cut(s) 134, 139, 167
HhaI GCGC 2 cut(s) 157, 731
Hin1II CATG 4 cut(s) 551, 740, 845, 899
Hin6I GCGC 2 cut(s) 155, 729
HinP1I GCGC 2 cut(s) 155, 729
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 6 cut(s) 163, 250, 370, 662, 672, 752
HpaII CCGG 3 cut(s) 134, 139, 167
HphI GGTGA 1 cut(s) 657
Hpy166II GTNNAC 2 cut(s) 565, 657
Hpy188I TCNGA 4 cut(s) 70, 349, 438, 891
Hpy188III TCNNGA 6 cut(s) 247, 353, 516, 571, 782, 882
Hpy8I GTNNAC 2 cut(s) 565, 657
HpyAV CCTTC 3 cut(s) 30, 358, 433
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4V TGCA 3 cut(s) 4, 332, 874
HpyF10VI GCNNNNNNNGC 2 cut(s) 802, 842
HpyF3I CTNAG 3 cut(s) 62, 67, 514
Hsp92II CATG 4 cut(s) 551, 740, 845, 899
HspAI GCGC 2 cut(s) 155, 729
KpnI GGTACC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 6 cut(s) 349, 720, 742, 776, 787, 848
LmnI GCTCC 3 cut(s) 57, 205, 713
Lsp1109I GCAGC 2 cut(s) 344, 823
LweI GCATC 3 cut(s) 301, 399, 552
MaeI CTAG 5 cut(s) 78, 339, 540, 588, 846
MaeIII GTNAC 1 cut(s) 224
MalI GATC 6 cut(s) 351, 722, 744, 778, 789, 850
MboI GATC 6 cut(s) 349, 720, 742, 776, 787, 848
MboII GAAGA 6 cut(s) 95, 184, 224, 264, 373, 394
MflI RGATCY 2 cut(s) 776, 848
MhlI GDGCHC 4 cut(s) 68, 109, 578, 645
MluCI AATT 3 cut(s) 40, 95, 304
MlyI GAGTC 2 cut(s) 681, 761
MmeI TCCRAC 1 cut(s) 754
MnlI CCTC 8 cut(s) 318, 335, 351, 498, 512, 578, 624, 889
MseI TTAA 2 cut(s) 492, 792
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 3 cut(s) 134, 139, 167
MspR9I CCNGG 3 cut(s) 168, 255, 484
MvaI CCWGG 2 cut(s) 255, 484
MvnI CGCG 1 cut(s) 818
MwoI GCNNNNNNNGC 2 cut(s) 802, 842
NciI CCSGG 1 cut(s) 168
NdeII GATC 6 cut(s) 349, 720, 742, 776, 787, 848
NlaIII CATG 4 cut(s) 551, 740, 845, 899
NlaIV GGNNCC 2 cut(s) 59, 260
NmuCI GTSAC 1 cut(s) 224
PceI AGGCCT 1 cut(s) 613
PfeI GAWTC 4 cut(s) 163, 250, 370, 662
PfoI TCCNGGA 1 cut(s) 482
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 2 cut(s) 334, 838
PleI GAGTC 2 cut(s) 680, 760
PpsI GAGTC 2 cut(s) 680, 760
PshAI GACNNNNGTC 1 cut(s) 179
Psp124BI GAGCTC 2 cut(s) 68, 109
Psp6I CCWGG 2 cut(s) 253, 482
PspGI CCWGG 2 cut(s) 253, 482
PspN4I GGNNCC 2 cut(s) 59, 260
PspPI GGNCC 1 cut(s) 136
PsrI GAACNNNNNNTAC 2 cut(s) 479, 511
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 2 cut(s) 776, 848
RsaI GTAC 4 cut(s) 14, 200, 260, 678
RsaNI GTAC 4 cut(s) 13, 199, 259, 677
Rsr2I CGGWCCG 1 cut(s) 136
RsrII CGGWCCG 1 cut(s) 136
SacI GAGCTC 2 cut(s) 68, 109
SaqAI TTAA 2 cut(s) 492, 792
SatI GCNGC 2 cut(s) 333, 837
Sau3AI GATC 6 cut(s) 349, 720, 742, 776, 787, 848
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 2 cut(s) 681, 761
ScrFI CCNGG 3 cut(s) 168, 255, 484
SduI GDGCHC 4 cut(s) 68, 109, 578, 645
SfaNI GCATC 3 cut(s) 301, 399, 552
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 791, 880
SmoI CTYRAG 2 cut(s) 791, 880
SpeI ACTAGT 1 cut(s) 587
Sse9I AATT 3 cut(s) 40, 95, 304
SseBI AGGCCT 1 cut(s) 613
SsiI CCGC 1 cut(s) 430
SspMI CTAG 5 cut(s) 78, 339, 540, 588, 846
SstI GAGCTC 2 cut(s) 68, 109
StuI AGGCCT 1 cut(s) 613
StyD4I CCNGG 3 cut(s) 166, 253, 482
StyI CCWWGG 2 cut(s) 52, 374
TaaI ACNGT 1 cut(s) 562
TaqI TCGA 3 cut(s) 183, 246, 309
TaqII GACCGA 1 cut(s) 315
TasI AATT 3 cut(s) 40, 95, 304
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 4 cut(s) 163, 250, 370, 662
Tru1I TTAA 2 cut(s) 492, 792
Tru9I TTAA 2 cut(s) 492, 792
TscAI CASTG 1 cut(s) 664
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 332, 836
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 12
TspRI CASTG 1 cut(s) 664
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 304
XspI CTAG 5 cut(s) 78, 339, 540, 588, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.