pycom01g16600
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0008236
Physical Location & Seq
Forward (+)
16102930 .. 16104359
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16600.1

Sequence Viewer

Length: 849 bp
ATGGAGACCTTGTATTTCTTCCAGGAGAGCCAGGGCTCGGAGTGGACTAAGGAGGAGAACAAGATGTTTGAGAGTGCTCTAGCTATGTTCGATGAGAAAAGCCCGGACAGGTTTCAGAGGGTGGCGGAGATGATTCCGGGGAAGACGGTGATCGACGTGATGAAGCAGTACCAGGAGCTGGAGGAAGATGTTTGTGAAATAGAATCCGGGAGGTTTCCTATTCCTCCGGGGTACCCTCAGTCTTATTTCAGATTGGAGTTAGGGGATGATCGGGATTTCGATGCTAATCGAAAGAGGCCGCTGGCGGCGAGGGGTTCTGAACAGGAAAGGAGAAAGGGAATTCCATGGACACAAGAAGAACACAGGCGATTTCTGATGGGACTTCTAAAGTACGGGAAAGGGGACTGGAGAAACATCTCCCGGAATTACGTGGTCACCAAAACTCCCACACAAGTAGCAAGCCATGCTCAGAAATACTTCATGAGGCAGCATTCAGGAGGGAAAGATAAAAGGAGGCCAAGCATCCATGACATAACTACTGTCAACCTCACAAGCGATGCACAGTCAGAAACTAACATGCCTCCTTCAGACCAGTTTCTGCCGGAGCAGAAGTCCACTGAATCGCTGAACGTGTTACTTGACTGGAATGCGGCTGATGATGAAGGAGCTGCCATGGGTTTCGACTCTACCCATGGCAATCTCTTTGATCCATCTCCGTATGACGTAGATGCAGATGGAATCAAGATGCAGCTGCAGAAACTGTATAGTCGCGCTCATTATGCTGCTCATGCCACACCTCAAAATTCGCTGTATCTAATGCAGTCCGCAAGACATCAGATTCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

283

Amino Acids

32.49

Weight (kDa)

5.64

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding_2 PF23082 13 - 62 8.8e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 115 - 160 5.4e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 231
AccB7I CCANNNNNTGG 1 cut(s) 178
AccII CGCG 1 cut(s) 771
AciI CCGC 5 cut(s) 125, 299, 305, 650, 825
AclWI GGATC 1 cut(s) 701
AcsI RAATTY 2 cut(s) 339, 802
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 3 cut(s) 170, 233, 392
AfiI CCNNNNNNNGG 2 cut(s) 37, 178
AflIII ACRYGT 1 cut(s) 630
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 3 cut(s) 21, 30, 171
AluBI AGCT 4 cut(s) 83, 178, 668, 751
AluI AGCT 4 cut(s) 83, 178, 668, 751
Alw21I GWGCWC 1 cut(s) 79
AlwI GGATC 1 cut(s) 701
AlwNI CAGNNNCTG 3 cut(s) 178, 598, 760
AoxI GGCC 2 cut(s) 296, 515
ApeKI GCWGC 5 cut(s) 487, 668, 748, 751, 782
ApoI RAATTY 2 cut(s) 339, 802
Asp700I GAANNNNTTC 1 cut(s) 476
Asp718I GGTACC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 773
AsuC2I CCSGG 5 cut(s) 104, 138, 208, 228, 421
AsuHPI GGTGA 2 cut(s) 160, 427
BanI GGYRCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 5 cut(s) 499, 655, 738, 760, 769
BccI CCATC 3 cut(s) 370, 718, 728
BciT130I CCWGG 3 cut(s) 23, 32, 173
BcnI CCSGG 5 cut(s) 104, 138, 208, 228, 421
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 752
BisI GCNGC 8 cut(s) 299, 306, 488, 651, 669, 749, 752, 783
BlsI GCNGC 8 cut(s) 300, 307, 489, 652, 670, 750, 753, 784
Bme1390I CCNGG 8 cut(s) 23, 32, 104, 138, 173, 208, 228, 421
BmgBI CACGTC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 8 cut(s) 23, 32, 104, 138, 173, 208, 228, 421
BmsI GCATC 5 cut(s) 271, 531, 547, 718, 735
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 2 cut(s) 200, 427
BpuMI CCSGG 5 cut(s) 104, 138, 208, 228, 421
BsaAI YACGTR 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 6 cut(s) 31, 137, 227, 344, 672, 691
BsaXI ACNNNNNCTCC 5 cut(s) 26, 427, 457, 596, 626
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 178
Bse1I ACTGG 3 cut(s) 410, 592, 647
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 3 cut(s) 23, 32, 173
BseDI CCNNGG 6 cut(s) 31, 137, 227, 344, 672, 691
BseGI GGATG 2 cut(s) 271, 522
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 37, 178
BseMII CTCAG 2 cut(s) 251, 482
BseNI ACTGG 3 cut(s) 410, 592, 647
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 5 cut(s) 499, 655, 738, 760, 769
Bsh1236I CGCG 1 cut(s) 771
BshFI GGCC 2 cut(s) 298, 517
BshNI GGYRCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 6 cut(s) 104, 137, 207, 227, 421, 602
BslFI GGGAC 2 cut(s) 393, 416
BslI CCNNNNNNNGG 2 cut(s) 37, 178
BsmFI GGGAC 2 cut(s) 393, 416
BsmI GAATGC 2 cut(s) 490, 652
BsnI GGCC 2 cut(s) 298, 517
Bsp1286I GDGCHC 2 cut(s) 38, 79
Bsp143I GATC 3 cut(s) 150, 268, 706
Bsp19I CCATGG 3 cut(s) 344, 672, 691
BspACI CCGC 5 cut(s) 125, 299, 305, 650, 825
BspANI GGCC 2 cut(s) 298, 517
BspCNI CTCAG 2 cut(s) 250, 481
BspFNI CGCG 1 cut(s) 771
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 1 cut(s) 233
BspMAI CTGCAG 1 cut(s) 756
BspPI GGATC 1 cut(s) 701
BspT107I GGYRCC 1 cut(s) 231
BsrI ACTGG 3 cut(s) 410, 592, 647
BssECI CCNNGG 6 cut(s) 31, 137, 227, 344, 672, 691
BssMI GATC 3 cut(s) 150, 268, 706
BssT1I CCWWGG 3 cut(s) 344, 672, 691
Bst2UI CCWGG 3 cut(s) 23, 32, 173
Bst4CI ACNGT 4 cut(s) 148, 541, 564, 762
BstAPI GCANNNNNTGC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 430
BstC8I GCNNGC 2 cut(s) 303, 460
BstDEI CTNAG 3 cut(s) 48, 237, 468
BstDSI CCRYGG 3 cut(s) 344, 672, 691
BstEII GGTNACC 1 cut(s) 433
BstF5I GGATG 2 cut(s) 271, 522
BstFNI CGCG 1 cut(s) 771
BstHHI GCGC 1 cut(s) 773
BstKTI GATC 3 cut(s) 153, 271, 709
BstMBI GATC 3 cut(s) 150, 268, 706
BstMWI GCNNNNNNNGC 3 cut(s) 464, 779, 788
BstNI CCWGG 3 cut(s) 23, 32, 173
BstNSI RCATGY 1 cut(s) 580
BstPI GGTNACC 1 cut(s) 433
BstSCI CCNGG 8 cut(s) 21, 30, 102, 136, 171, 206, 226, 419
BstSFI CTRYAG 1 cut(s) 752
BstUI CGCG 1 cut(s) 771
BstV1I GCAGC 5 cut(s) 499, 655, 738, 760, 769
BstV2I GAAGAC 1 cut(s) 149
BsuRI GGCC 2 cut(s) 298, 517
BtgI CCRYGG 3 cut(s) 344, 672, 691
BtgZI GCGATG 1 cut(s) 570
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 2 cut(s) 271, 522
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 2 cut(s) 303, 460
CaiI CAGNNNCTG 3 cut(s) 178, 598, 760
CciI TCATGA 1 cut(s) 480
CfoI GCGC 1 cut(s) 773
Csp6I GTAC 3 cut(s) 169, 232, 391
CviAII CATG 9 cut(s) 345, 464, 481, 527, 577, 673, 692, 788, 842
CviQI GTAC 3 cut(s) 169, 232, 391
DdeI CTNAG 3 cut(s) 48, 237, 468
DpnI GATC 3 cut(s) 152, 270, 708
DpnII GATC 3 cut(s) 150, 268, 706
EciI GGCGGA 1 cut(s) 140
Eco130I CCWWGG 3 cut(s) 344, 672, 691
Eco24I GRGCYC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 570
Eco91I GGTNACC 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 339
EcoRII CCWGG 3 cut(s) 21, 30, 171
EcoT14I CCWWGG 3 cut(s) 344, 672, 691
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 3 cut(s) 344, 672, 691
FaeI CATG 9 cut(s) 348, 467, 484, 530, 580, 676, 695, 791, 845
FaqI GGGAC 2 cut(s) 393, 416
FatI CATG 9 cut(s) 344, 463, 480, 526, 576, 672, 691, 787, 841
Fnu4HI GCNGC 8 cut(s) 299, 306, 488, 651, 669, 749, 752, 783
FokI GGATG 2 cut(s) 278, 509
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 8 cut(s) 299, 306, 488, 651, 669, 749, 752, 783
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 772
GluI GCNGC 8 cut(s) 299, 306, 488, 651, 669, 749, 752, 783
GsuI CTGGAG 2 cut(s) 200, 427
HaeIII GGCC 2 cut(s) 298, 517
HapII CCGG 6 cut(s) 104, 137, 207, 227, 421, 602
HhaI GCGC 1 cut(s) 773
Hin1II CATG 9 cut(s) 348, 467, 484, 530, 580, 676, 695, 791, 845
Hin6I GCGC 1 cut(s) 771
HinP1I GCGC 1 cut(s) 771
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 6 cut(s) 133, 203, 620, 683, 738, 838
HpaII CCGG 6 cut(s) 104, 137, 207, 227, 421, 602
HphI GGTGA 2 cut(s) 160, 427
Hpy166II GTNNAC 3 cut(s) 45, 544, 615
Hpy188I TCNGA 9 cut(s) 40, 117, 251, 319, 375, 471, 568, 589, 837
Hpy188III TCNNGA 4 cut(s) 272, 481, 495, 742
Hpy8I GTNNAC 3 cut(s) 45, 544, 615
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 594, 656
HpyCH4III ACNGT 4 cut(s) 148, 541, 564, 762
HpyCH4IV ACGT 4 cut(s) 156, 429, 630, 723
HpyCH4V TGCA 5 cut(s) 560, 731, 748, 754, 820
HpyF10VI GCNNNNNNNGC 3 cut(s) 464, 779, 788
HpyF3I CTNAG 3 cut(s) 48, 237, 468
HpySE526I ACGT 4 cut(s) 156, 429, 630, 723
Hsp92II CATG 9 cut(s) 348, 467, 484, 530, 580, 676, 695, 791, 845
HspAI GCGC 1 cut(s) 771
KpnI GGTACC 1 cut(s) 235
Kzo9I GATC 3 cut(s) 150, 268, 706
LmnI GCTCC 3 cut(s) 175, 604, 665
Lsp1109I GCAGC 5 cut(s) 499, 655, 738, 760, 769
LweI GCATC 5 cut(s) 271, 531, 547, 718, 735
MaeI CTAG 1 cut(s) 80
MaeII ACGT 4 cut(s) 156, 429, 630, 723
MaeIII GTNAC 2 cut(s) 433, 633
MalI GATC 3 cut(s) 152, 270, 708
MboI GATC 3 cut(s) 150, 268, 706
MboII GAAGA 4 cut(s) 10, 154, 197, 368
MhlI GDGCHC 2 cut(s) 38, 79
MluCI AATT 3 cut(s) 339, 424, 802
MlyI GAGTC 1 cut(s) 677
MroXI GAANNNNTTC 1 cut(s) 476
MspA1I CMGCKG 2 cut(s) 301, 751
MspI CCGG 6 cut(s) 104, 137, 207, 227, 421, 602
MspR9I CCNGG 8 cut(s) 23, 32, 104, 138, 173, 208, 228, 421
Mva1269I GAATGC 2 cut(s) 490, 652
MvaI CCWGG 3 cut(s) 23, 32, 173
MvnI CGCG 1 cut(s) 771
MwoI GCNNNNNNNGC 3 cut(s) 464, 779, 788
NciI CCSGG 5 cut(s) 104, 138, 208, 228, 421
NcoI CCATGG 3 cut(s) 344, 672, 691
NdeII GATC 3 cut(s) 150, 268, 706
NlaIII CATG 9 cut(s) 348, 467, 484, 530, 580, 676, 695, 791, 845
NlaIV GGNNCC 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 1 cut(s) 580
PagI TCATGA 1 cut(s) 480
PctI GAATGC 2 cut(s) 490, 652
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 5 cut(s) 133, 203, 620, 738, 838
PflMI CCANNNNNTGG 1 cut(s) 178
PfoI TCCNGGA 3 cut(s) 21, 206, 419
PkrI GCNGC 8 cut(s) 300, 307, 489, 652, 670, 750, 753, 784
PleI GAGTC 1 cut(s) 677
PpsI GAGTC 1 cut(s) 677
Ppu21I YACGTR 1 cut(s) 430
Psp6I CCWGG 3 cut(s) 21, 30, 171
PspEI GGTNACC 1 cut(s) 433
PspGI CCWGG 3 cut(s) 21, 30, 171
PspN4I GGNNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 756
PstNI CAGNNNCTG 3 cut(s) 178, 598, 760
PvuII CAGCTG 1 cut(s) 751
RsaI GTAC 3 cut(s) 170, 233, 392
RsaNI GTAC 3 cut(s) 169, 232, 391
SatI GCNGC 8 cut(s) 299, 306, 488, 651, 669, 749, 752, 783
Sau3AI GATC 3 cut(s) 150, 268, 706
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 8 cut(s) 23, 32, 104, 138, 173, 208, 228, 421
SduI GDGCHC 2 cut(s) 38, 79
SfaNI GCATC 5 cut(s) 271, 531, 547, 718, 735
SfcI CTRYAG 1 cut(s) 752
Sse9I AATT 3 cut(s) 339, 424, 802
SsiI CCGC 5 cut(s) 125, 299, 305, 650, 825
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 8 cut(s) 21, 30, 102, 136, 171, 206, 226, 419
StyI CCWWGG 3 cut(s) 344, 672, 691
TaaI ACNGT 4 cut(s) 148, 541, 564, 762
TaiI ACGT 4 cut(s) 159, 432, 633, 726
TaqI TCGA 5 cut(s) 90, 153, 279, 289, 681
TasI AATT 3 cut(s) 339, 424, 802
TauI GCSGC 3 cut(s) 301, 308, 653
TfiI GAWTC 5 cut(s) 133, 203, 620, 738, 838
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 5 cut(s) 487, 668, 748, 751, 782
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 4 cut(s) 176, 469, 675, 830
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 1 cut(s) 622
Van91I CCANNNNNTGG 1 cut(s) 178
XapI RAATTY 2 cut(s) 339, 802
XceI RCATGY 1 cut(s) 580
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.