pycom07g19630
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0008236
Physical Location & Seq
Forward (+)
21926346 .. 21927839
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g19630.2

Sequence Viewer

Length: 867 bp
ATGGAGACCTTGTATCCGGCTTCAAACATGGCGGATTATGATTGGTACTCAGAGTGGACTAAGGAGGAGAACAAGATGTTTGAGAGTGCCCTGGCGATGTTCGATGAGAAAACGCCGGACAGGTGGCGGAAGGTGGCGGAGATGATACCGGGGAAGACGGAGATCGACGTGATCAAACAGTACCAGGACCTGGAGGAAGATGTTTGTGAAATAGAATCCGGGAGGTTTCCGATTCCTCCAGGGTATCCTCAGTCGTACTTCACATTGGAGTTGGGGGATGATCGAGATTTCGATGCTAATCGAAAGAGGCCGGCAGCGGCAGCGGCGAGGGGTTCTGATCAGGAGAGGAAGAAGGGAATTCCATGGACACCCGAAGAGCACAGGCGGTTTCTGCTGGGACTTCTAAAGCACGGGAAAGGGGACTGGAGAAACATCTCTCGGAATTATGTGGTCACTAAAACTCCCACACAAGTAGCAAGCCATGCTCAGAAATACTTCATGAGGCAACATTCAGGCGGGAAAGATAAAAGGCGGCCAAGCATCCATGACATAACCACTGTCAACCTCACAAGCAATACTCCACCAGAAACTAACGGGTCTCCTTCAGACCAGTCTCCACCAGAGCAGAAGTCCACTGAATCGCCAAACGTCTTACTTGACTGGAATGCAGCTGATGATGGAGGAGCCGCCGTGGTTTTCGGCTCTACTCATGGCAATCTCATAGATCCATCTCCATATGAAGTACCGGCAGATGGGATTAAAATGCAGTTGCAGAAACTATACAGCCACGCTCATTATGCTGCTCACGCCACACCTCAAAATTCGCTATATCTAAGGCAGTCCGCGAGACATCAGATTCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

289

Amino Acids

32.64

Weight (kDa)

6.01

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 190
AccII CGCG 1 cut(s) 845
AclWI GGATC 1 cut(s) 719
AcoI YGGCCR 1 cut(s) 533
AcsI RAATTY 2 cut(s) 357, 820
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 4 cut(s) 47, 182, 257, 744
AfiI CCNNNNNNNGG 2 cut(s) 190, 752
AgsI TTSAA 1 cut(s) 24
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 4 cut(s) 90, 183, 189, 238
AluBI AGCT 1 cut(s) 671
AluI AGCT 1 cut(s) 671
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 3 cut(s) 603, 618, 841
AlwI GGATC 1 cut(s) 719
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 2 cut(s) 308, 533
ApeKI GCWGC 4 cut(s) 314, 320, 668, 800
ApoI RAATTY 2 cut(s) 357, 820
Asp700I GAANNNNTTC 1 cut(s) 494
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 2 cut(s) 150, 220
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 4 cut(s) 326, 332, 680, 787
BccI CCATC 3 cut(s) 671, 736, 746
BceAI ACGGC 1 cut(s) 674
BciT130I CCWGG 4 cut(s) 92, 185, 191, 240
BciVI GTATCC 2 cut(s) 24, 255
BclI TGATCA 2 cut(s) 171, 337
BcnI CCSGG 2 cut(s) 150, 220
BcoDI GTCTC 3 cut(s) 603, 618, 841
BfuI GTATCC 2 cut(s) 24, 255
BisI GCNGC 8 cut(s) 315, 318, 321, 324, 533, 669, 687, 801
BlsI GCNGC 8 cut(s) 316, 319, 322, 325, 534, 670, 688, 802
Bme1390I CCNGG 6 cut(s) 92, 150, 185, 191, 220, 240
Bme18I GGWCC 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 685
BmrFI CCNGG 6 cut(s) 92, 150, 185, 191, 220, 240
BmsI GCATC 2 cut(s) 283, 549
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 3 cut(s) 212, 222, 445
BpuMI CCSGG 2 cut(s) 150, 220
BsaBI GATNNNNATC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 603
BsaJI CCNNGG 5 cut(s) 90, 149, 239, 362, 690
BsaXI ACNNNNNCTCC 5 cut(s) 26, 445, 475, 675, 705
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 752
Bse118I RCCGGY 2 cut(s) 310, 745
Bse1I ACTGG 3 cut(s) 428, 610, 665
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 4 cut(s) 92, 185, 191, 240
BseDI CCNNGG 5 cut(s) 90, 149, 239, 362, 690
BseGI GGATG 2 cut(s) 283, 540
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 2 cut(s) 190, 752
BseMII CTCAG 3 cut(s) 63, 263, 500
BseNI ACTGG 3 cut(s) 428, 610, 665
BseRI GAGGAG 2 cut(s) 80, 696
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 4 cut(s) 326, 332, 680, 787
BseYI CCCAGC 1 cut(s) 394
Bsh1236I CGCG 1 cut(s) 845
BshFI GGCC 2 cut(s) 310, 535
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 6 cut(s) 17, 116, 149, 219, 311, 746
BslFI GGGAC 2 cut(s) 411, 434
BslI CCNNNNNNNGG 2 cut(s) 190, 752
BsmAI GTCTC 3 cut(s) 603, 618, 841
BsmFI GGGAC 2 cut(s) 411, 434
BsmI GAATGC 1 cut(s) 670
BsnI GGCC 2 cut(s) 310, 535
Bso31I GGTCTC 1 cut(s) 603
Bsp1286I GDGCHC 2 cut(s) 91, 381
Bsp143I GATC 5 cut(s) 162, 171, 280, 337, 724
Bsp19I CCATGG 1 cut(s) 362
BspANI GGCC 2 cut(s) 310, 535
BspCNI CTCAG 3 cut(s) 62, 262, 499
BspFNI CGCG 1 cut(s) 845
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 685
BspPI GGATC 1 cut(s) 719
BspQI GCTCTTC 1 cut(s) 369
BspTNI GGTCTC 1 cut(s) 603
BsrFI RCCGGY 2 cut(s) 310, 745
BsrI ACTGG 3 cut(s) 428, 610, 665
BssAI RCCGGY 2 cut(s) 310, 745
BssECI CCNNGG 5 cut(s) 90, 149, 239, 362, 690
BssMI GATC 5 cut(s) 162, 171, 280, 337, 724
BssT1I CCWWGG 1 cut(s) 362
Bst2UI CCWGG 4 cut(s) 92, 185, 191, 240
Bst4CI ACNGT 2 cut(s) 180, 559
Bst6I CTCTTC 1 cut(s) 369
BstAPI GCANNNNNTGC 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 312, 478
BstDEI CTNAG 5 cut(s) 49, 60, 249, 486, 833
BstDSI CCRYGG 2 cut(s) 362, 690
BstF5I GGATG 2 cut(s) 283, 540
BstFNI CGCG 1 cut(s) 845
BstKTI GATC 5 cut(s) 165, 174, 283, 340, 727
BstMAI GTCTC 3 cut(s) 603, 618, 841
BstMBI GATC 5 cut(s) 162, 171, 280, 337, 724
BstMWI GCNNNNNNNGC 6 cut(s) 320, 323, 391, 482, 797, 806
BstNI CCWGG 4 cut(s) 92, 185, 191, 240
BstSCI CCNGG 6 cut(s) 90, 148, 183, 189, 218, 238
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 1 cut(s) 845
BstV1I GCAGC 4 cut(s) 326, 332, 680, 787
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
BsuI GTATCC 2 cut(s) 24, 255
BsuRI GGCC 2 cut(s) 310, 535
BtgI CCRYGG 2 cut(s) 362, 690
BtgZI GCGATG 1 cut(s) 110
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 283, 540
BtsIMutI CAGTG 2 cut(s) 555, 633
Cac8I GCNNGC 2 cut(s) 312, 478
CaiI CAGNNNCTG 1 cut(s) 190
CciI TCATGA 1 cut(s) 498
Cfr10I RCCGGY 2 cut(s) 310, 745
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 4 cut(s) 46, 181, 256, 743
CviAII CATG 7 cut(s) 28, 363, 482, 499, 545, 710, 860
CviJI RGCY 8 cut(s) 20, 310, 480, 535, 671, 686, 702, 786
CviKI_1 RGCY 8 cut(s) 20, 310, 480, 535, 671, 686, 702, 786
CviQI GTAC 4 cut(s) 46, 181, 256, 743
DdeI CTNAG 5 cut(s) 49, 60, 249, 486, 833
DpnI GATC 5 cut(s) 164, 173, 282, 339, 726
DpnII GATC 5 cut(s) 162, 171, 280, 337, 724
EaeI YGGCCR 1 cut(s) 533
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 3 cut(s) 47, 142, 152
Eco130I CCWWGG 1 cut(s) 362
Eco31I GGTCTC 1 cut(s) 603
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 588
EcoO109I RGGNCCY 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 357
EcoRII CCWGG 4 cut(s) 90, 183, 189, 238
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 7 cut(s) 31, 366, 485, 502, 548, 713, 863
FaqI GGGAC 2 cut(s) 411, 434
FatI CATG 7 cut(s) 27, 362, 481, 498, 544, 709, 859
FauI CCCGC 1 cut(s) 509
FauNDI CATATG 1 cut(s) 736
FbaI TGATCA 2 cut(s) 171, 337
Fnu4HI GCNGC 8 cut(s) 315, 318, 321, 324, 533, 669, 687, 801
FokI GGATG 2 cut(s) 290, 527
Fsp4HI GCNGC 8 cut(s) 315, 318, 321, 324, 533, 669, 687, 801
GluI GCNGC 8 cut(s) 315, 318, 321, 324, 533, 669, 687, 801
GsaI CCCAGC 1 cut(s) 398
GsuI CTGGAG 3 cut(s) 212, 222, 445
HaeIII GGCC 2 cut(s) 310, 535
HapII CCGG 6 cut(s) 17, 116, 149, 219, 311, 746
Hin1II CATG 7 cut(s) 31, 366, 485, 502, 548, 713, 863
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 4 cut(s) 215, 232, 638, 856
HpaII CCGG 6 cut(s) 17, 116, 149, 219, 311, 746
Hpy166II GTNNAC 3 cut(s) 57, 562, 633
Hpy188I TCNGA 7 cut(s) 52, 231, 337, 441, 489, 607, 855
Hpy188III TCNNGA 3 cut(s) 284, 341, 499
Hpy8I GTNNAC 3 cut(s) 57, 562, 633
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 124, 346, 612
HpyCH4III ACNGT 2 cut(s) 180, 559
HpyCH4IV ACGT 2 cut(s) 168, 648
HpyCH4V TGCA 3 cut(s) 668, 766, 772
HpyF10VI GCNNNNNNNGC 6 cut(s) 320, 323, 391, 482, 797, 806
HpyF3I CTNAG 5 cut(s) 49, 60, 249, 486, 833
HpySE526I ACGT 2 cut(s) 168, 648
Hsp92II CATG 7 cut(s) 31, 366, 485, 502, 548, 713, 863
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
Ksp22I TGATCA 2 cut(s) 171, 337
Kzo9I GATC 5 cut(s) 162, 171, 280, 337, 724
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 1 cut(s) 683
Lsp1109I GCAGC 4 cut(s) 326, 332, 680, 787
LweI GCATC 2 cut(s) 283, 549
MaeII ACGT 2 cut(s) 168, 648
MaeIII GTNAC 1 cut(s) 451
MalI GATC 5 cut(s) 164, 173, 282, 339, 726
MboI GATC 5 cut(s) 162, 171, 280, 337, 724
MboII GAAGA 4 cut(s) 166, 209, 361, 386
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 91, 381
MluCI AATT 3 cut(s) 357, 442, 820
MroNI GCCGGC 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 494
MseI TTAA 1 cut(s) 759
MspA1I CMGCKG 3 cut(s) 317, 323, 671
MspI CCGG 6 cut(s) 17, 116, 149, 219, 311, 746
MspR9I CCNGG 6 cut(s) 92, 150, 185, 191, 220, 240
Mva1269I GAATGC 1 cut(s) 670
MvaI CCWGG 4 cut(s) 92, 185, 191, 240
MvnI CGCG 1 cut(s) 845
MwoI GCNNNNNNNGC 6 cut(s) 320, 323, 391, 482, 797, 806
NaeI GCCGGC 1 cut(s) 312
NciI CCSGG 2 cut(s) 150, 220
NcoI CCATGG 1 cut(s) 362
NdeI CATATG 1 cut(s) 736
NdeII GATC 5 cut(s) 162, 171, 280, 337, 724
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 7 cut(s) 31, 366, 485, 502, 548, 713, 863
NlaIV GGNNCC 1 cut(s) 685
NmuCI GTSAC 1 cut(s) 451
PagI TCATGA 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 1 cut(s) 670
PdiI GCCGGC 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 494
PfeI GAWTC 4 cut(s) 215, 232, 638, 856
PflMI CCANNNNNTGG 1 cut(s) 190
PfoI TCCNGGA 1 cut(s) 218
PkrI GCNGC 8 cut(s) 316, 319, 322, 325, 534, 670, 688, 802
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 4 cut(s) 90, 183, 189, 238
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 4 cut(s) 90, 183, 189, 238
PspN4I GGNNCC 1 cut(s) 685
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 724
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 4 cut(s) 47, 182, 257, 744
RsaNI GTAC 4 cut(s) 46, 181, 256, 743
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 759
SatI GCNGC 8 cut(s) 315, 318, 321, 324, 533, 669, 687, 801
Sau3AI GATC 5 cut(s) 162, 171, 280, 337, 724
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 6 cut(s) 92, 150, 185, 191, 220, 240
SduI GDGCHC 2 cut(s) 91, 381
SfaNI GCATC 2 cut(s) 283, 549
SinI GGWCC 1 cut(s) 187
Sse9I AATT 3 cut(s) 357, 442, 820
StyD4I CCNGG 6 cut(s) 90, 148, 183, 189, 218, 238
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 2 cut(s) 180, 559
TaiI ACGT 2 cut(s) 171, 651
TaqI TCGA 5 cut(s) 102, 165, 283, 291, 301
TasI AATT 3 cut(s) 357, 442, 820
TauI GCSGC 4 cut(s) 320, 326, 535, 689
TfiI GAWTC 4 cut(s) 215, 232, 638, 856
Tru1I TTAA 1 cut(s) 759
Tru9I TTAA 1 cut(s) 759
TscAI CASTG 2 cut(s) 562, 640
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 4 cut(s) 314, 320, 668, 800
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 3 cut(s) 487, 753, 848
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 2 cut(s) 562, 640
Van91I CCANNNNNTGG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 2 cut(s) 357, 820
XmnI GAANNNNTTC 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.