RLG00000027136
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008236
Physical Location & Seq
Reverse (-)
8874770 .. 8876272
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027136

Sequence Viewer

Length: 915 bp
ATGCAAACTCTGTACCCACCTTCGTATATGGCTGATACTAATTGGTTTGTCCAAGACAGCCAGAGCTCAGATTGGACTAGAGAAGAGAACAAGCAATTTGAGAGTGCTCTGGCTATCTACGATGAGAAAACCCCGGACCGGTGGGGAAAGATTGCGATGATGATTCCGGGGAAGACGGCTGTCGATGTGTTCAAGCAGTACAAGGAGCTGGAAGATGATGTTAGTGACATAGAAGCAGGGCTGGTCGAAATTCCAGGCTACCAACAGCCGTCTTCTTTCACATTGGAGTTGGTGGATGACCGAAATTTCGATGCTAACCGAAAGAGGTCTGCAGCAGCTAGAGGTTCTGATCAGGAGAGGAAGAAGGGGATTCCTTGGACAGAAGATGAGCATCTGCGGTTTCTGAAGGGACTTCTAAAATATGGGAAAGGGGATTGGAGAAATATCTCCAGGAACTTTGTTATTTCTAAAACTCCAACTCAAGTTGCTAGCCATGCTCAGAAATACTTTATGAGGCAACACTCAGGAGGAAAAGATAAAAGGAGACCTAGCATCCATGATATAACAACTGTCAACCTCACGAGCACTACCATTACTAGTCCATCACAGAATAATAATAGGCCTCCTTTAGACCAGTCTCCACCACCAGAGCACAATAGCAAGTCCACTGAATCACCAAGAGTCGTACTCGACTGCTGGAATATGCCTAATGATGGATTAGCAGGAGCTATGATCTTTGGCGCAACACATGGCGATCTTTTTGAGTCATCGGCTCCATTTGATGTTGGATCTCCAGACGATCTTAGGCTACATTGGCAAAAAATTTACGCCAGTGCCACTCATTATGCTGCTCATGCTAGATCCCCGAGTTCGATGTATCTAATGCAGACCTCAAGACATCAGATACATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

305

Amino Acids

34.46

Weight (kDa)

6.42

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 24 - 67 8.7e-06 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 24 - 71 1.7e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 125 - 170 4.4e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 397
AclWI GGATC 2 cut(s) 796, 855
AcsI RAATTY 3 cut(s) 249, 304, 822
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 3 cut(s) 14, 200, 687
AfiI CCNNNNNNNGG 2 cut(s) 138, 713
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 193
AhlI ACTAGT 1 cut(s) 596
AjnI CCWGG 2 cut(s) 253, 449
AluBI AGCT 4 cut(s) 66, 208, 338, 728
AluI AGCT 4 cut(s) 66, 208, 338, 728
Alw21I GWGCWC 4 cut(s) 68, 109, 587, 654
Alw26I GTCTC 2 cut(s) 538, 642
AlwI GGATC 2 cut(s) 796, 855
Ama87I CYCGRG 1 cut(s) 865
AoxI GGCC 1 cut(s) 620
ApeKI GCWGC 3 cut(s) 332, 335, 848
ApoI RAATTY 3 cut(s) 249, 304, 822
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AsiGI ACCGGT 1 cut(s) 138
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 2 cut(s) 134, 168
AsuHPI GGTGA 1 cut(s) 666
AsuNHI GCTAGC 1 cut(s) 488
AvaI CYCGRG 1 cut(s) 865
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 68
BauI CACGAG 1 cut(s) 580
BbsI GAAGAC 2 cut(s) 179, 264
Bbv12I GWGCWC 4 cut(s) 68, 109, 587, 654
BbvI GCAGC 3 cut(s) 344, 347, 835
BccI CCATC 2 cut(s) 610, 707
BceAI ACGGC 2 cut(s) 192, 253
BciT130I CCWGG 2 cut(s) 255, 451
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 2 cut(s) 134, 168
BcoDI GTCTC 2 cut(s) 538, 642
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 6 cut(s) 78, 339, 489, 549, 597, 858
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 3 cut(s) 333, 336, 849
BlsI GCNGC 3 cut(s) 334, 337, 850
Bme1390I CCNGG 4 cut(s) 134, 168, 255, 451
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 865
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 774
BmrFI CCNGG 4 cut(s) 134, 168, 255, 451
BmsI GCATC 3 cut(s) 301, 400, 561
BmtI GCTAGC 1 cut(s) 492
BoxI GACNNNNGTC 1 cut(s) 179
BpiI GAAGAC 2 cut(s) 179, 264
BplI GAGNNNNNCTC 2 cut(s) 672, 704
BpmI CTGGAG 2 cut(s) 433, 777
BpuEI CTTGAG 2 cut(s) 465, 877
BpuMI CCSGG 2 cut(s) 134, 168
BsaBI GATNNNNATC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 538
BsaJI CCNNGG 3 cut(s) 132, 167, 374
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 713
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 634, 831
Bse8I GATNNNNATC 1 cut(s) 390
BseBI CCWGG 2 cut(s) 255, 451
BseDI CCNNGG 3 cut(s) 132, 167, 374
BseGI GGATG 2 cut(s) 301, 552
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 2 cut(s) 138, 713
BseMII CTCAG 3 cut(s) 81, 512, 537
BseNI ACTGG 2 cut(s) 634, 831
BseXI GCAGC 3 cut(s) 344, 347, 835
BshFI GGCC 1 cut(s) 622
BshTI ACCGGT 1 cut(s) 138
BsiHKAI GWGCWC 4 cut(s) 68, 109, 587, 654
BsiHKCI CYCGRG 1 cut(s) 865
BsiSI CCGG 3 cut(s) 134, 139, 167
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 138, 713
BsmAI GTCTC 2 cut(s) 538, 642
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 1 cut(s) 622
Bso31I GGTCTC 1 cut(s) 538
BsoBI CYCGRG 1 cut(s) 865
Bsp1286I GDGCHC 4 cut(s) 68, 109, 587, 654
Bsp143I GATC 6 cut(s) 349, 732, 754, 788, 799, 860
BspACI CCGC 1 cut(s) 397
BspANI GGCC 1 cut(s) 622
BspCNI CTCAG 3 cut(s) 80, 511, 536
BspLI GGNNCC 1 cut(s) 774
BspMAI CTGCAG 1 cut(s) 334
BspOI GCTAGC 1 cut(s) 492
BspPI GGATC 2 cut(s) 796, 855
BspTNI GGTCTC 1 cut(s) 538
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 2 cut(s) 634, 831
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 132, 167, 374
BssMI GATC 6 cut(s) 349, 732, 754, 788, 799, 860
BssSI CACGAG 1 cut(s) 580
BssT1I CCWWGG 1 cut(s) 374
Bst2BI CACGAG 1 cut(s) 580
Bst2UI CCWGG 2 cut(s) 255, 451
Bst4CI ACNGT 1 cut(s) 571
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 490
BstDEI CTNAG 4 cut(s) 67, 498, 523, 803
BstF5I GGATG 2 cut(s) 301, 552
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 6 cut(s) 352, 735, 757, 791, 802, 863
BstMAI GTCTC 2 cut(s) 538, 642
BstMBI GATC 6 cut(s) 349, 732, 754, 788, 799, 860
BstMWI GCNNNNNNNGC 3 cut(s) 494, 814, 854
BstNI CCWGG 2 cut(s) 255, 451
BstPAI GACNNNNGTC 1 cut(s) 179
BstSCI CCNGG 4 cut(s) 132, 166, 253, 449
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 3 cut(s) 344, 347, 835
BstV2I GAAGAC 2 cut(s) 179, 264
BstX2I RGATCY 2 cut(s) 788, 860
BstYI RGATCY 2 cut(s) 788, 860
BsuRI GGCC 1 cut(s) 622
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 301, 552
BtsIMutI CAGTG 2 cut(s) 666, 838
Cac8I GCNNGC 1 cut(s) 490
CfoI GCGC 1 cut(s) 743
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 136
CpoI CGGWCCG 1 cut(s) 136
Csp6I GTAC 3 cut(s) 13, 199, 686
CspAI ACCGGT 1 cut(s) 138
CspI CGGWCCG 1 cut(s) 136
CviAII CATG 5 cut(s) 494, 557, 749, 854, 908
CviQI GTAC 3 cut(s) 13, 199, 686
DdeI CTNAG 4 cut(s) 67, 498, 523, 803
DpnI GATC 6 cut(s) 351, 734, 756, 790, 801, 862
DpnII GATC 6 cut(s) 349, 732, 754, 788, 799, 860
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 374
Eco147I AGGCCT 1 cut(s) 622
Eco24I GRGCYC 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 865
EcoICRI GAGCTC 1 cut(s) 66
EcoRII CCWGG 2 cut(s) 253, 449
EcoT14I CCWWGG 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 5 cut(s) 497, 560, 752, 857, 911
FaqI GGGAC 1 cut(s) 423
FatI CATG 5 cut(s) 493, 556, 748, 853, 907
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 3 cut(s) 333, 336, 849
FokI GGATG 2 cut(s) 308, 539
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 333, 336, 849
FspBI CTAG 6 cut(s) 78, 339, 489, 549, 597, 858
GlaI GCGC 1 cut(s) 742
GluI GCNGC 3 cut(s) 333, 336, 849
GsuI CTGGAG 2 cut(s) 433, 777
HaeIII GGCC 1 cut(s) 622
HapII CCGG 3 cut(s) 134, 139, 167
HhaI GCGC 1 cut(s) 743
Hin1II CATG 5 cut(s) 497, 560, 752, 857, 911
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 5 cut(s) 163, 370, 671, 681, 764
HpaII CCGG 3 cut(s) 134, 139, 167
HphI GGTGA 1 cut(s) 666
Hpy166II GTNNAC 2 cut(s) 574, 666
Hpy188I TCNGA 5 cut(s) 70, 349, 405, 501, 903
Hpy188III TCNNGA 5 cut(s) 353, 525, 580, 794, 894
Hpy8I GTNNAC 2 cut(s) 574, 666
HpyAV CCTTC 3 cut(s) 30, 358, 400
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4V TGCA 3 cut(s) 4, 332, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 494, 814, 854
HpyF3I CTNAG 4 cut(s) 67, 498, 523, 803
Hsp92II CATG 5 cut(s) 497, 560, 752, 857, 911
HspAI GCGC 1 cut(s) 741
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 6 cut(s) 349, 732, 754, 788, 799, 860
LmnI GCTCC 3 cut(s) 205, 725, 778
Lsp1109I GCAGC 3 cut(s) 344, 347, 835
LweI GCATC 3 cut(s) 301, 400, 561
MaeI CTAG 6 cut(s) 78, 339, 489, 549, 597, 858
MaeIII GTNAC 1 cut(s) 224
MalI GATC 6 cut(s) 351, 734, 756, 790, 801, 862
MboI GATC 6 cut(s) 349, 732, 754, 788, 799, 860
MboII GAAGA 6 cut(s) 95, 184, 224, 264, 373, 395
MflI RGATCY 2 cut(s) 788, 860
MhlI GDGCHC 4 cut(s) 68, 109, 587, 654
MluCI AATT 5 cut(s) 40, 95, 249, 304, 822
MlyI GAGTC 2 cut(s) 690, 773
MmeI TCCRAC 2 cut(s) 500, 766
MnlI CCTC 8 cut(s) 318, 335, 351, 507, 521, 587, 633, 901
MspI CCGG 3 cut(s) 134, 139, 167
MspR9I CCNGG 4 cut(s) 134, 168, 255, 451
MvaI CCWGG 2 cut(s) 255, 451
MwoI GCNNNNNNNGC 3 cut(s) 494, 814, 854
NciI CCSGG 2 cut(s) 134, 168
NdeII GATC 6 cut(s) 349, 732, 754, 788, 799, 860
NheI GCTAGC 1 cut(s) 488
NlaIII CATG 5 cut(s) 497, 560, 752, 857, 911
NlaIV GGNNCC 1 cut(s) 774
NmuCI GTSAC 1 cut(s) 224
PceI AGGCCT 1 cut(s) 622
PfeI GAWTC 3 cut(s) 163, 370, 671
PfoI TCCNGGA 1 cut(s) 449
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 3 cut(s) 334, 337, 850
PleI GAGTC 2 cut(s) 689, 772
PpsI GAGTC 2 cut(s) 689, 772
PshAI GACNNNNGTC 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 253, 449
PspGI CCWGG 2 cut(s) 253, 449
PspN4I GGNNCC 1 cut(s) 774
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 2 cut(s) 788, 860
RsaI GTAC 3 cut(s) 14, 200, 687
RsaNI GTAC 3 cut(s) 13, 199, 686
Rsr2I CGGWCCG 1 cut(s) 136
RsrII CGGWCCG 1 cut(s) 136
SacI GAGCTC 1 cut(s) 68
SatI GCNGC 3 cut(s) 333, 336, 849
Sau3AI GATC 6 cut(s) 349, 732, 754, 788, 799, 860
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 2 cut(s) 690, 773
ScrFI CCNGG 4 cut(s) 134, 168, 255, 451
SduI GDGCHC 4 cut(s) 68, 109, 587, 654
SfaNI GCATC 3 cut(s) 301, 400, 561
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 480, 892
SmoI CTYRAG 2 cut(s) 480, 892
SpeI ACTAGT 1 cut(s) 596
Sse9I AATT 5 cut(s) 40, 95, 249, 304, 822
SseBI AGGCCT 1 cut(s) 622
SsiI CCGC 1 cut(s) 397
SspMI CTAG 6 cut(s) 78, 339, 489, 549, 597, 858
SstI GAGCTC 1 cut(s) 68
StuI AGGCCT 1 cut(s) 622
StyD4I CCNGG 4 cut(s) 132, 166, 253, 449
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 1 cut(s) 571
TaqI TCGA 5 cut(s) 183, 246, 309, 690, 872
TaqII GACCGA 1 cut(s) 315
TasI AATT 5 cut(s) 40, 95, 249, 304, 822
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 3 cut(s) 163, 370, 671
TscAI CASTG 2 cut(s) 673, 838
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 3 cut(s) 332, 335, 848
Tsp45I GTSAC 1 cut(s) 224
TspRI CASTG 2 cut(s) 673, 838
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 3 cut(s) 249, 304, 822
XspI CTAG 6 cut(s) 78, 339, 489, 549, 597, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.