AT3G11530

Vacuolar protein sorting-associated protein 55 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010180
Physical Location & Seq
Reverse (-)
3628530 .. 3630536
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11530.3

Sequence Viewer

Length: 342 bp
ATGTTTTCATCTAGTATCCTCCTACAGATCCTGGCATGCGCGATATATGGTAACTGGTGGCCAATGCTATCAGCACTCATGTATGTAGTGGTGCCTATGCCTTGTATGTTCTTTGGAGGAGGCTCAACCCAATTCCTTATTAGTCGGGACGGTGGAGGGTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTGGGAAGCCTTGCTATCCCAATCATCTTAAGGCACGCACAGATGATCGAGACAGGTGCAATGCTCATAGAGTTCACATCATTCTTCATATTCATTTGCACTGTCATGTGTTTTCACCGGGCTAGTCTCGATGATGACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps55

Protein Analysis

113

Amino Acids

12.47

Weight (kDa)

4.91

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps55 PF04133 1 - 86 8.9e-19 Vacuolar protein sorting 55
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccII CGCG 1 cut(s) 41
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 59
AflII CTTAAG 1 cut(s) 226
AjnI CCWGG 1 cut(s) 30
Alw26I GTCTC 2 cut(s) 242, 329
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 305
BalI TGGCCA 1 cut(s) 61
BanI GGYRCC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 182
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 1 cut(s) 32
BciVI GTATCC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 2 cut(s) 242, 329
BfaI CTAG 2 cut(s) 12, 321
BfmI CTRYAG 1 cut(s) 23
BfrI CTTAAG 1 cut(s) 226
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 2 cut(s) 32, 317
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 32, 317
BmsI GCATC 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 185
Bse1I ACTGG 2 cut(s) 59, 341
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 264
BseNI ACTGG 2 cut(s) 59, 341
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 198
BsiSI CCGG 2 cut(s) 186, 316
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 242, 329
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 61
Bsp143I GATC 2 cut(s) 27, 243
BspANI GGCC 1 cut(s) 61
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 2 cut(s) 59, 341
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 27, 243
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 152, 199, 301
BstAFI CTTAAG 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 37, 234
BstDSI CCRYGG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 2 cut(s) 30, 246
BstMAI GTCTC 2 cut(s) 242, 329
BstMBI GATC 2 cut(s) 27, 243
BstMCI CGRYCG 1 cut(s) 198
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 30, 315
BstSFI CTRYAG 1 cut(s) 23
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 37, 234
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 1 cut(s) 41
CseI GACGC 1 cut(s) 176
CviAII CATG 3 cut(s) 36, 79, 304
CviJI RGCY 4 cut(s) 61, 123, 207, 320
CviKI_1 RGCY 4 cut(s) 61, 123, 207, 320
DpnI GATC 2 cut(s) 29, 245
DpnII GATC 2 cut(s) 27, 243
EaeI YGGCCR 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 30
FaeI CATG 3 cut(s) 39, 82, 307
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 35, 78, 303
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 2 cut(s) 12, 321
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 171
HaeIII GGCC 1 cut(s) 61
HapII CCGG 2 cut(s) 186, 316
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 41
Hin1II CATG 3 cut(s) 39, 82, 307
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HpaII CCGG 2 cut(s) 186, 316
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 273
Hpy188III TCNNGA 4 cut(s) 146, 181, 247, 326
Hpy8I GTNNAC 1 cut(s) 273
HpyCH4III ACNGT 3 cut(s) 152, 199, 301
HpyCH4V TGCA 2 cut(s) 257, 297
Hsp92II CATG 3 cut(s) 39, 82, 307
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 2 cut(s) 27, 243
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 7 cut(s) 17, 40, 44, 199, 237, 322, 329
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 200
MaeI CTAG 2 cut(s) 12, 321
MaeIII GTNAC 1 cut(s) 50
MalI GATC 2 cut(s) 29, 245
MboI GATC 2 cut(s) 27, 243
MboII GAAGA 1 cut(s) 274
MflI RGATCY 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 61
MluCI AATT 1 cut(s) 131
MluNI TGGCCA 1 cut(s) 61
MnlI CCTC 4 cut(s) 29, 110, 113, 149
Mox20I TGGCCA 1 cut(s) 61
MscI TGGCCA 1 cut(s) 61
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 61
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 2 cut(s) 186, 316
MspR9I CCNGG 2 cut(s) 32, 317
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 41
NciI CCSGG 1 cut(s) 317
NdeII GATC 2 cut(s) 27, 243
NlaIII CATG 3 cut(s) 39, 82, 307
NlaIV GGNNCC 1 cut(s) 93
NspI RCATGY 1 cut(s) 39
PaeI GCATGC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 2 cut(s) 27, 243
ScrFI CCNGG 2 cut(s) 32, 317
SetI ASST 1 cut(s) 256
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
SphI GCATGC 1 cut(s) 39
Sse9I AATT 1 cut(s) 131
SspMI CTAG 2 cut(s) 12, 321
StyD4I CCNGG 2 cut(s) 30, 315
TaaI ACNGT 3 cut(s) 152, 199, 301
TaqI TCGA 3 cut(s) 194, 246, 327
TasI AATT 1 cut(s) 131
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 304
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 274, 280
TspRI CASTG 1 cut(s) 304
Vha464I CTTAAG 1 cut(s) 226
XceI RCATGY 1 cut(s) 39
XspI CTAG 2 cut(s) 12, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.