Prupe.7G101900_v2.0.a1

Vacuolar protein sorting-associated protein 55 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010180
Physical Location & Seq
Forward (+)
13179597 .. 13183369
3773 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G101900.2

Sequence Viewer

Length: 342 bp
ATGTTTTCAGCAAGCATCTTGCTACAGATCCTGGCTTGTGCATTATACAACAATTGGTGGCCAATGTTATCTGCTCTCATGTACGTGCTCGTACCCATGCCTTGCTTATTCTTTGGTGGTGGTTCTACTCAGTTTTTGCTTAGCAGGGAAAGTGATGGGTGGGTAAATGCTGCTAAATTCTTGACTGGAGCATCAACTGTGGGGAGCATAGCCATTCCTATTATCCTTAGGCATGCTCATATGATTGAGACATCTGCTATGTGGATTGAATTCTTTTCATTCCTCATATTTGTCTGCACTGTCTTGTGCTTCCACCGTGCCAGCCTCGAAGATGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps55

Protein Analysis

114

Amino Acids

12.72

Weight (kDa)

5.38

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 59
AcsI RAATTY 2 cut(s) 176, 269
AfaI GTAC 2 cut(s) 83, 93
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 176, 269
AxyI CCTNAGG 1 cut(s) 227
BalI TGGCCA 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 23
BisI GCNGC 1 cut(s) 171
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 2 cut(s) 24, 200
BpmI CTGGAG 1 cut(s) 207
Bpu1102I GCTNAGC 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 190
Bse21I CCTNAGG 1 cut(s) 227
BseBI CCWGG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 27
Bsp1720I GCTNAGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 142
BspPI GGATC 1 cut(s) 22
BsrI ACTGG 1 cut(s) 190
BssMI GATC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 199, 301, 317
BstBAI YACGTR 1 cut(s) 85
BstC8I GCNNGC 3 cut(s) 13, 234, 322
BstDEI CTNAG 3 cut(s) 129, 140, 227
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
Bsu36I CCTNAGG 1 cut(s) 227
BsuRI GGCC 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 3 cut(s) 13, 234, 322
CaiI CAGNNNCTG 1 cut(s) 31
Csp6I GTAC 2 cut(s) 82, 92
CviAII CATG 3 cut(s) 79, 97, 233
CviJI RGCY 4 cut(s) 35, 61, 212, 324
CviKI_1 RGCY 4 cut(s) 35, 61, 212, 324
CviQI GTAC 2 cut(s) 82, 92
DdeI CTNAG 3 cut(s) 129, 140, 227
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 30
FaeI CATG 3 cut(s) 82, 100, 236
FaiI YATR 9 cut(s) 46, 80, 98, 209, 234, 240, 242, 260, 287
FatI CATG 3 cut(s) 78, 96, 232
FauNDI CATATG 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 3 cut(s) 82, 100, 236
Hpy188III TCNNGA 1 cut(s) 181
HpyCH4III ACNGT 3 cut(s) 199, 301, 317
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 41, 297
HpyF3I CTNAG 3 cut(s) 129, 140, 227
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 3 cut(s) 82, 100, 236
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 2 cut(s) 188, 204
LpnPI CCDG 5 cut(s) 17, 44, 130, 171, 334
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 2 cut(s) 24, 200
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 341
MfeI CAATTG 1 cut(s) 52
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 61
MluCI AATT 3 cut(s) 52, 176, 269
MluNI TGGCCA 1 cut(s) 61
MnlI CCTC 2 cut(s) 293, 335
Mox20I TGGCCA 1 cut(s) 61
MscI TGGCCA 1 cut(s) 61
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 240
NdeII GATC 1 cut(s) 27
NlaIII CATG 3 cut(s) 82, 100, 236
NspI RCATGY 1 cut(s) 236
PaeI GCATGC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 2 cut(s) 83, 93
RsaNI GTAC 2 cut(s) 82, 92
RseI CAYNNNNRTG 1 cut(s) 83
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 90
SetI ASST 1 cut(s) 87
SfaNI GCATC 2 cut(s) 24, 200
SfcI CTRYAG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 83
SphI GCATGC 1 cut(s) 236
Sse9I AATT 3 cut(s) 52, 176, 269
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 199, 301, 317
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 327
TasI AATT 3 cut(s) 52, 176, 269
TscAI CASTG 1 cut(s) 304
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 304
XapI RAATTY 2 cut(s) 176, 269
XceI RCATGY 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.