Rroxscaffold_6G00406880

Vacuolar protein sorting-associated protein 55 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010180
Physical Location & Seq
Forward (+)
29438046 .. 29442223
4178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406880.1

Sequence Viewer

Length: 369 bp
ATGTGCAGGCTCGCAGGACTTGCTTTTATGTTTTCAGCGAGCATCTTGCTACAGGTTCTGGCTTGTGCATTATACAACAATTGGTGGCCTATGTTGTCTGCTCTCATGTACGTCCTAGTACCGATGCCTTGTCTATTCTTTGGTGGTGGTTCTACTCAGGTTTTATTTACGAGGGAGAGTGATGGGTGGATAAATGCTGCTAAGTTTTTGACTGGGGCATCAACTGTGGGGAGCCTAGCCATTCCTATAATTCTTAGGCACGCTCATATGATTGAGACATCTGCTATGTGGATCGAATTCGTATCATTCTTCATATTTGTGTGCACTGTCATGTGTTTCCATCGTGCCAGCCTCGAAGACGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps55

Protein Analysis

122

Amino Acids

13.68

Weight (kDa)

5.8

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps55 PF04133 5 - 118 4.2e-32 Vacuolar protein sorting 55
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 1 cut(s) 296
AfaI GTAC 2 cut(s) 110, 120
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 269
Alw44I GTGCAC 1 cut(s) 322
AlwI GGATC 1 cut(s) 299
AlwNI CAGNNNCTG 1 cut(s) 58
AoxI GGCC 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 322
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 184
BccI CCATC 2 cut(s) 176, 348
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 2 cut(s) 116, 236
BfmI CTRYAG 1 cut(s) 50
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 233
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 3 cut(s) 51, 114, 227
BmuI ACTGGG 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 1 cut(s) 291
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 233
BspPI GGATC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 217
BssMI GATC 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 226, 328
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 5 cut(s) 8, 12, 40, 261, 349
BstDEI CTNAG 3 cut(s) 156, 201, 254
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 50
BstSLI GKGCMC 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 363
BsuRI GGCC 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 5 cut(s) 8, 12, 40, 261, 349
CaiI CAGNNNCTG 1 cut(s) 58
Csp6I GTAC 2 cut(s) 109, 119
CviAII CATG 2 cut(s) 106, 331
CviJI RGCY 6 cut(s) 10, 62, 88, 234, 239, 351
CviKI_1 RGCY 6 cut(s) 10, 62, 88, 234, 239, 351
CviQI GTAC 2 cut(s) 109, 119
DdeI CTNAG 3 cut(s) 156, 201, 254
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 296
FaeI CATG 2 cut(s) 109, 334
FatI CATG 2 cut(s) 105, 330
FauNDI CATATG 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 116, 236
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 2 cut(s) 109, 334
Hpy166II GTNNAC 1 cut(s) 324
Hpy8I GTNNAC 1 cut(s) 324
HpyCH4III ACNGT 2 cut(s) 226, 328
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 3 cut(s) 6, 68, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 3 cut(s) 156, 201, 254
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 2 cut(s) 109, 334
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 5 cut(s) 38, 44, 143, 198, 361
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 3 cut(s) 51, 114, 227
MaeI CTAG 2 cut(s) 116, 236
MaeII ACGT 1 cut(s) 111
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 2 cut(s) 301, 368
MfeI CAATTG 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 3 cut(s) 79, 249, 296
MnlI CCTC 2 cut(s) 165, 362
MslI CAYNNNNRTG 2 cut(s) 317, 329
MunI CAATTG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeI CATATG 1 cut(s) 267
NdeII GATC 1 cut(s) 291
NlaIII CATG 2 cut(s) 109, 334
NlaIV GGNNCC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 58
RsaI GTAC 2 cut(s) 110, 120
RsaNI GTAC 2 cut(s) 109, 119
RseI CAYNNNNRTG 2 cut(s) 317, 329
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 291
SduI GDGCHC 1 cut(s) 326
SetI ASST 3 cut(s) 57, 114, 162
SfaNI GCATC 3 cut(s) 51, 114, 227
SfcI CTRYAG 1 cut(s) 50
SmiMI CAYNNNNRTG 2 cut(s) 317, 329
Sse9I AATT 3 cut(s) 79, 249, 296
SspMI CTAG 2 cut(s) 116, 236
TaaI ACNGT 2 cut(s) 226, 328
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 294, 354
TasI AATT 3 cut(s) 79, 249, 296
TscAI CASTG 1 cut(s) 331
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 301
TspRI CASTG 1 cut(s) 331
VneI GTGCAC 1 cut(s) 322
XapI RAATTY 1 cut(s) 296
XspI CTAG 2 cut(s) 116, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.