Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007062.1

Orthogroup ID

OG0010180

Physical Location & Seq

Genomic Coordinates Forward (+)

90470 .. 97612

Gene Structure 7143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007062.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgtctccggaatacttctacgatcgatatgtcaaaatcacaagtcgatcggacgctcaaatccggacgctcaaatcctcacggatcgaatcatcaaacgaggatgccacagagacgaccggagcaaataggcgagtcgatctagaaggtttcgccgccggagctcaccggaaaagcctggtcggatttccgggtttgggtcgggtcagtggcaaagaagtgagagaacgaagagtttcagagtttcctgaaaaggaaagtggaaaaatgaaaatatttagtgccgctaaattcagcagcaaaaataccaaaacaccacttgatttatttgatttaatcctgaaccggaaatcactttccctttcggaatttctcaactcccaatacttcttctcgctcaagagaccccgtccaccttcaccccagcaacacagaaagctctcctctcttctcttcaatggcgatgaccatagaaggcttgcaggacttgcttttatgttttcagcgagcatcttgctacaggttctggcttgtgcattatacaacaattggtggcctatgttgtctgctctcatgtacgtcctggtaccgatgccttgtctattctttggtggtggttctactcaggttttatttacgagggagagtgatgggtggataaatgctgctaagtttttgactggggcatcaactgtggggagcctagccattcctataattcttaggcacgctcatatgattgagacatctgctatgtggatcgaattcgtatcattcttcatatttgtgtgcactgtcatgtgtttccatcgtgccagcctcgaagacgagtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps55

Protein Analysis

278

Amino Acids

31.44

Weight (kDa)

9.41

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11530 AT3G11530 AT3G11530
fragaria_vesca	FvH4_6g19440
malus_domestica	MD12G1030600.v1.1 MD14G1031100.v1.1
prunus_persica	Prupe.7G101900_v2.0.a1 Prupe.7G101900_v2.0.a1
pyrus_communis	pycom12g02850 pycom14g02800
rosa_chinensis	RchiOBHm_Chr3g0474751
rosa_laevigata	RLG00000023899
rosa_multiflora	Rmu_sc0007062.1_g000019
rosa_roxburghii	Rroxscaffold_6G00406880
rosa_rugosa	Rorug03G0143100 Rorug03G0143200
rosa_samantha	Rh3AG193400 Rh3BG223200 Rh3CG218000 Rh3DG219200
rosa_wichuraiana	Rw3G017620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	586
AccIII	TCCGGA	2 cut(s)	7, 63
AciI	CCGC	2 cut(s)	156, 285
AclWI	GGATC	2 cut(s)	92, 767
AcsI	RAATTY	3 cut(s)	290, 368, 764
AfaI	GTAC	2 cut(s)	578, 588
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	457
AjnI	CCWGG	2 cut(s)	177, 582
AluBI	AGCT	2 cut(s)	164, 439
AluI	AGCT	2 cut(s)	164, 439
Alw21I	GWGCWC	2 cut(s)	166, 794
Alw26I	GTCTC	4 cut(s)	9, 107, 397, 737
Alw44I	GTGCAC	1 cut(s)	790
AlwI	GGATC	2 cut(s)	92, 767
AlwNI	CAGNNNCTG	1 cut(s)	526
Aor13HI	TCCGGA	2 cut(s)	7, 63
AoxI	GGCC	1 cut(s)	554
ApaLI	GTGCAC	1 cut(s)	790
ApeKI	GCWGC	2 cut(s)	297, 665
ApoI	RAATTY	3 cut(s)	290, 368, 764
Asp700I	GAANNNNTTC	1 cut(s)	235
Asp718I	GGTACC	1 cut(s)	586
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	158, 411
BaeGI	GKGCMC	1 cut(s)	794
BanI	GGYRCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	831
Bbv12I	GWGCWC	2 cut(s)	166, 794
BbvI	GCAGC	2 cut(s)	309, 652
BccI	CCATC	2 cut(s)	644, 816
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BciT130I	CCWGG	2 cut(s)	179, 584
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	4 cut(s)	9, 107, 397, 737
BfaI	CTAG	2 cut(s)	143, 704
BfmI	CTRYAG	1 cut(s)	518
BisI	GCNGC	4 cut(s)	156, 285, 298, 666
BlsI	GCNGC	4 cut(s)	157, 286, 299, 667
Bme1390I	CCNGG	3 cut(s)	179, 192, 584
BmiI	GGNNCC	2 cut(s)	588, 701
BmrFI	CCNGG	3 cut(s)	179, 192, 584
BmrI	ACTGGG	1 cut(s)	690
BmsI	GCATC	4 cut(s)	94, 519, 582, 695
BmuI	ACTGGG	1 cut(s)	690
BpiI	GAAGAC	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	397
BsaWI	WCCGGW	5 cut(s)	7, 63, 119, 168, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	685
BseAI	TCCGGA	2 cut(s)	7, 63
BseBI	CCWGG	2 cut(s)	179, 584
BseCI	ATCGAT	1 cut(s)	25
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	1 cut(s)	433
BseSI	GKGCMC	1 cut(s)	794
BseXI	GCAGC	2 cut(s)	309, 652
BseYI	CCCAGC	1 cut(s)	423
Bsh1285I	CGRYCG	3 cut(s)	25, 50, 120
BshFI	GGCC	1 cut(s)	556
BshNI	GGYRCC	1 cut(s)	586
BshVI	ATCGAT	1 cut(s)	25
BsiEI	CGRYCG	3 cut(s)	25, 50, 120
BsiHKAI	GWGCWC	2 cut(s)	166, 794
BsiSI	CCGG	7 cut(s)	8, 64, 120, 159, 169, 191, 346
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	4 cut(s)	9, 107, 397, 737
BsmBI	CGTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	556
Bso31I	GGTCTC	1 cut(s)	397
Bsp1286I	GDGCHC	2 cut(s)	166, 794
Bsp13I	TCCGGA	2 cut(s)	7, 63
Bsp143I	GATC	5 cut(s)	22, 47, 84, 139, 759
BspACI	CCGC	2 cut(s)	156, 285
BspANI	GGCC	1 cut(s)	556
BspCNI	CTCAG	1 cut(s)	637
BspDI	ATCGAT	1 cut(s)	25
BspEI	TCCGGA	2 cut(s)	7, 63
BspLI	GGNNCC	2 cut(s)	588, 701
BspPI	GGATC	2 cut(s)	92, 767
BspT107I	GGYRCC	1 cut(s)	586
BspTNI	GGTCTC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	685
BssMI	GATC	5 cut(s)	22, 47, 84, 139, 759
Bst2UI	CCWGG	2 cut(s)	179, 584
Bst4CI	ACNGT	2 cut(s)	694, 796
Bst6I	CTCTTC	3 cut(s)	226, 453, 458
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	4 cut(s)	480, 508, 729, 817
BstDEI	CTNAG	3 cut(s)	624, 669, 722
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	5 cut(s)	25, 50, 87, 142, 762
BstMAI	GTCTC	4 cut(s)	9, 107, 397, 737
BstMBI	GATC	5 cut(s)	22, 47, 84, 139, 759
BstMCI	CGRYCG	3 cut(s)	25, 50, 120
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 488
BstNI	CCWGG	2 cut(s)	179, 584
BstSCI	CCNGG	3 cut(s)	177, 190, 582
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	794
BstV1I	GCAGC	2 cut(s)	309, 652
BstV2I	GAAGAC	1 cut(s)	831
Bsu15I	ATCGAT	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	556
BsuTUI	ATCGAT	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	214, 792
Cac8I	GCNNGC	4 cut(s)	480, 508, 729, 817
CaiI	CAGNNNCTG	1 cut(s)	526
ClaI	ATCGAT	1 cut(s)	25
CseI	GACGC	2 cut(s)	62, 76
Csp6I	GTAC	2 cut(s)	577, 587
CviAII	CATG	2 cut(s)	574, 799
CviJI	RGCY	9 cut(s)	164, 177, 439, 478, 530, 556, 702, 707, 819
CviKI_1	RGCY	9 cut(s)	164, 177, 439, 478, 530, 556, 702, 707, 819
CviQI	GTAC	2 cut(s)	577, 587
DdeI	CTNAG	3 cut(s)	624, 669, 722
DpnI	GATC	5 cut(s)	24, 49, 86, 141, 761
DpnII	GATC	5 cut(s)	22, 47, 84, 139, 759
Eam1104I	CTCTTC	3 cut(s)	226, 453, 458
EarI	CTCTTC	3 cut(s)	226, 453, 458
Ecl136II	GAGCTC	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	764
EcoRII	CCWGG	2 cut(s)	177, 582
EcoT38I	GRGCYC	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	2 cut(s)	577, 802
FatI	CATG	2 cut(s)	573, 798
FauNDI	CATATG	1 cut(s)	735
Fnu4HI	GCNGC	4 cut(s)	156, 285, 298, 666
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	4 cut(s)	156, 285, 298, 666
FspBI	CTAG	2 cut(s)	143, 704
GluI	GCNGC	4 cut(s)	156, 285, 298, 666
GsaI	CCCAGC	1 cut(s)	427
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	7 cut(s)	8, 64, 120, 159, 169, 191, 346
HgaI	GACGC	2 cut(s)	62, 76
Hin1II	CATG	2 cut(s)	577, 802
HinfI	GANTC	2 cut(s)	89, 135
HpaII	CCGG	7 cut(s)	8, 64, 120, 159, 169, 191, 346
HphI	GGTGA	2 cut(s)	158, 411
Hpy166II	GTNNAC	2 cut(s)	413, 792
Hpy188I	TCNGA	4 cut(s)	52, 185, 241, 367
Hpy188III	TCNNGA	6 cut(s)	8, 64, 143, 248, 340, 400
Hpy8I	GTNNAC	2 cut(s)	413, 792
HpyAV	CCTTC	3 cut(s)	140, 426, 468
HpyCH4III	ACNGT	2 cut(s)	694, 796
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	3 cut(s)	482, 536, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 488
HpyF3I	CTNAG	3 cut(s)	624, 669, 722
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	2 cut(s)	577, 802
Kpn2I	TCCGGA	2 cut(s)	7, 63
KpnI	GGTACC	1 cut(s)	590
Kzo9I	GATC	5 cut(s)	22, 47, 84, 139, 759
LmnI	GCTCC	3 cut(s)	122, 161, 699
Lsp1109I	GCAGC	2 cut(s)	309, 652
LweI	GCATC	4 cut(s)	94, 519, 582, 695
MaeI	CTAG	2 cut(s)	143, 704
MaeII	ACGT	1 cut(s)	579
MalI	GATC	5 cut(s)	24, 49, 86, 141, 761
MboI	GATC	5 cut(s)	22, 47, 84, 139, 759
MboII	GAAGA	6 cut(s)	243, 382, 440, 445, 769, 836
MfeI	CAATTG	1 cut(s)	547
MhlI	GDGCHC	2 cut(s)	166, 794
MluCI	AATT	5 cut(s)	290, 368, 547, 717, 764
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	5 cut(s)	88, 94, 454, 633, 830
MroI	TCCGGA	2 cut(s)	7, 63
MroXI	GAANNNNTTC	1 cut(s)	235
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	785, 797
MspI	CCGG	7 cut(s)	8, 64, 120, 159, 169, 191, 346
MspR9I	CCNGG	3 cut(s)	179, 192, 584
MunI	CAATTG	1 cut(s)	547
MvaI	CCWGG	2 cut(s)	179, 584
MwoI	GCNNNNNNNGC	2 cut(s)	161, 488
NciI	CCSGG	1 cut(s)	192
NdeI	CATATG	1 cut(s)	735
NdeII	GATC	5 cut(s)	22, 47, 84, 139, 759
NlaIII	CATG	2 cut(s)	577, 802
NlaIV	GGNNCC	2 cut(s)	588, 701
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	89
PflFI	GACNNNGTC	1 cut(s)	408
PkrI	GCNGC	4 cut(s)	157, 286, 299, 667
Ple19I	CGATCG	2 cut(s)	25, 50
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	177, 582
PspFI	CCCAGC	1 cut(s)	423
PspGI	CCWGG	2 cut(s)	177, 582
PspN4I	GGNNCC	2 cut(s)	588, 701
PstNI	CAGNNNCTG	1 cut(s)	526
PsyI	GACNNNGTC	1 cut(s)	408
PvuI	CGATCG	2 cut(s)	25, 50
RsaI	GTAC	2 cut(s)	578, 588
RsaNI	GTAC	2 cut(s)	577, 587
RseI	CAYNNNNRTG	2 cut(s)	785, 797
SacI	GAGCTC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	4 cut(s)	156, 285, 298, 666
Sau3AI	GATC	5 cut(s)	22, 47, 84, 139, 759
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	3 cut(s)	179, 192, 584
SduI	GDGCHC	2 cut(s)	166, 794
SetI	ASST	7 cut(s)	151, 166, 418, 441, 525, 582, 630
SfaNI	GCATC	4 cut(s)	94, 519, 582, 695
SfcI	CTRYAG	1 cut(s)	518
SmiMI	CAYNNNNRTG	2 cut(s)	785, 797
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	290, 368, 547, 717, 764
SsiI	CCGC	2 cut(s)	156, 285
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	2 cut(s)	143, 704
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	3 cut(s)	177, 190, 582
TaaI	ACNGT	2 cut(s)	694, 796
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	6 cut(s)	25, 46, 87, 138, 762, 822
TasI	AATT	5 cut(s)	290, 368, 547, 717, 764
TauI	GCSGC	2 cut(s)	158, 287
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	2 cut(s)	214, 799
TseI	GCWGC	2 cut(s)	297, 665
TspDTI	ATGAA	2 cut(s)	284, 769
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	2 cut(s)	214, 799
Tth111I	GACNNNGTC	1 cut(s)	408
VneI	GTGCAC	1 cut(s)	790
XapI	RAATTY	3 cut(s)	290, 368, 764
XbaI	TCTAGA	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	235
XspI	CTAG	2 cut(s)	143, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.