Rh3BG223200

Vacuolar protein sorting-associated protein 55 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010180
Physical Location & Seq
Reverse (-)
20327860 .. 20330360
2501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG223200.1

Sequence Viewer

Length: 201 bp
ATGTCAGCCATTGGAGAGTGGATAAATGCTGCCAAGTTTTTGACTGGGGCATCAACTGTGGGGAGCCTAGCCATTCCTATAATTCTTAGGCACGCTCATATGATTGAGACATCTGCTATGTGGATCGAATTCGTATCATTCTTCATATTTGTGTGCACTGTCATGTGTTTCCATCGTGCCAGCCTCGAAGACGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps55

Protein Analysis

66

Amino Acids

7.44

Weight (kDa)

5.36

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps55 PF04133 6 - 63 3.2e-13 Vacuolar protein sorting 55
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 1 cut(s) 128
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 154
AlwI GGATC 1 cut(s) 131
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 68
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 65
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 59
BmuI ACTGGG 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 65
BspPI GGATC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 58, 160
BstC8I GCNNGC 2 cut(s) 93, 181
BstDEI CTNAG 1 cut(s) 86
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 93, 181
CviAII CATG 1 cut(s) 163
CviJI RGCY 4 cut(s) 8, 66, 71, 183
CviKI_1 RGCY 4 cut(s) 8, 66, 71, 183
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 128
FaeI CATG 1 cut(s) 166
FaiI YATR 6 cut(s) 80, 99, 101, 119, 146, 164
FatI CATG 1 cut(s) 162
FauNDI CATATG 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 156
HpyCH4III ACNGT 2 cut(s) 58, 160
HpyCH4V TGCA 1 cut(s) 156
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 1 cut(s) 166
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 2 cut(s) 30, 193
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 68
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 2 cut(s) 133, 200
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 2 cut(s) 81, 128
MnlI CCTC 1 cut(s) 194
MslI CAYNNNNRTG 2 cut(s) 149, 161
NdeI CATATG 1 cut(s) 99
NdeII GATC 1 cut(s) 123
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 65
RseI CAYNNNNRTG 2 cut(s) 149, 161
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 123
SduI GDGCHC 1 cut(s) 158
SfaNI GCATC 1 cut(s) 59
SgeI CNNG 8 cut(s) 46, 57, 80, 104, 175, 188, 192, 197
SmiMI CAYNNNNRTG 2 cut(s) 149, 161
Sse9I AATT 2 cut(s) 81, 128
SspMI CTAG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 58, 160
TaqI TCGA 2 cut(s) 126, 186
TasI AATT 2 cut(s) 81, 128
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 133
TspRI CASTG 1 cut(s) 163
VneI GTGCAC 1 cut(s) 154
XapI RAATTY 1 cut(s) 128
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.