Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010180

Physical Location & Seq

Genomic Coordinates Reverse (-)

11727032 .. 11728118

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0143100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAGTGTGAGATCAAGTTTCGTGGTTTTCTCGTTTTTCTTTTTGGTTACAATAGCCTCATCTATTTCTCAAGCAGAAGCTCTTTCAATTGGTGGTTTTGAACACCATGAAATTCCTGTTCCGGTAGTTGGCCCTGAGAGTGTGGCGTTTGACTGCAGCGGAGCAGCCTACGTCGGGGTTGCGGACGGGCGGATTTTTAAATGGCTTGGGGGCCAATATGGATGGGCGGAGTTTGCCACAACCTCCCCATCTAGGCCAAGAGCATTGTGCGACGGCTCCACCAACAAAGACAATGAGCCAACTTGTGGGAGACCCCTCGGCCTCAAGTTCCACCCCACCACATGCGAGCTTTACATAGCCGATGCCTATTTCGGGCTCTTGAAGACAGGACCTAACGGCGGGGTAGCCCGACAACTTGCAACTTCAGCAGAAGGAATCCCTTTTCGGTTTACAAATTCTGTGGATATTAATCCCGTAACTGGAATGGTTTATTTCACAGATTCAAGCTCGGTTTATCAAAGAAGGAATTGGGAGTCATCATTCAACAGCGGTGACAAAACTGGAAGACTAATGCGATATAATCCAAGTGGAACCCGCGTGGAAGTTTTGCTCCGTGGTTTGTCTTTTGCAAATGGTGTAGCTGTAAGTCTAGATGGTAATTTCGTGCTAGTAACCCAAACAACAAGCAAAAACATTCTAAGGTATTGGGTTCGAGGACCAAGAGCTACTAATTCAGGTGTAGGAGAACTTTTTGCACAAACACAAGGCTTCCCTGACAATATTAACAGAAACATAAACGGAGAGTTTTGGGTTGCAGAGAATAGTAATGGAAGAGGTAAAGCAGCCAAGTTCGATGCCTACGGGAACTTCATGGAAGCCTTAGATGGGCTTAATCCTATTAGCCATGCCCAAGAATTTCATCATAATCTTTGGATAGGTTCGATTGTCAACCCCTTTGTGGGCGTTGTTCGCAACATTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps55

Protein Analysis

327

Amino Acids

35.64

Weight (kDa)

7.01

Isoelectric Point (pI)

27.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Str_synth	PF03088	152 - 239	4e-29	Strictosidine synthase
SGL	PF08450	183 - 292	1.8e-09	SMP-30/Gluconolactonase/LRE-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11530 AT3G11530 AT3G11530
fragaria_vesca	FvH4_6g19440
malus_domestica	MD12G1030600.v1.1 MD14G1031100.v1.1
prunus_persica	Prupe.7G101900_v2.0.a1 Prupe.7G101900_v2.0.a1
pyrus_communis	pycom12g02850 pycom14g02800
rosa_chinensis	RchiOBHm_Chr3g0474751
rosa_laevigata	RLG00000023899
rosa_multiflora	Rmu_sc0007062.1_g000019
rosa_roxburghii	Rroxscaffold_6G00406880
rosa_rugosa	Rorug03G0143100 Rorug03G0143200
rosa_samantha	Rh3AG193400 Rh3BG223200 Rh3CG218000 Rh3DG219200
rosa_wichuraiana	Rw3G017620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccII	CGCG	1 cut(s)	597
AciI	CCGC	7 cut(s)	159, 182, 190, 227, 399, 549, 595
AcsI	RAATTY	3 cut(s)	111, 454, 914
AcuI	CTGAAG	1 cut(s)	408
AgsI	TTSAA	5 cut(s)	87, 101, 382, 504, 544
AluBI	AGCT	5 cut(s)	80, 349, 507, 641, 725
AluI	AGCT	5 cut(s)	80, 349, 507, 641, 725
Alw26I	GTCTC	1 cut(s)	304
AoxI	GGCC	4 cut(s)	130, 211, 254, 319
ApeKI	GCWGC	3 cut(s)	156, 164, 842
ApoI	RAATTY	3 cut(s)	111, 454, 914
AseI	ATTAAT	1 cut(s)	468
AspS9I	GGNCC	4 cut(s)	131, 211, 389, 716
AsuHPI	GGTGA	1 cut(s)	563
AvaII	GGWCC	2 cut(s)	389, 716
BanII	GRGCYC	1 cut(s)	378
BbsI	GAAGAC	2 cut(s)	389, 571
BbvI	GCAGC	3 cut(s)	168, 176, 854
BccI	CCATC	4 cut(s)	216, 256, 647, 878
BceAI	ACGGC	2 cut(s)	289, 412
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	3 cut(s)	252, 650, 668
BfmI	CTRYAG	1 cut(s)	154
BisI	GCNGC	3 cut(s)	157, 165, 843
BlsI	GCNGC	3 cut(s)	158, 166, 844
Bme18I	GGWCC	2 cut(s)	389, 716
BmgT120I	GGNCC	4 cut(s)	131, 211, 389, 716
BmiI	GGNNCC	3 cut(s)	212, 277, 592
BmsI	GCATC	2 cut(s)	352, 844
BpiI	GAAGAC	2 cut(s)	389, 571
BpuEI	CTTGAG	2 cut(s)	54, 308
BsaBI	GATNNNNATC	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	316, 613
BsaWI	WCCGGW	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	484, 565
Bse8I	GATNNNNATC	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	316, 613
BseGI	GGATG	1 cut(s)	227
BseJI	GATNNNNATC	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	484, 565
BseXI	GCAGC	3 cut(s)	168, 176, 854
Bsh1236I	CGCG	1 cut(s)	597
BshFI	GGCC	4 cut(s)	132, 213, 256, 321
BsiSI	CCGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	304
BsnI	GGCC	4 cut(s)	132, 213, 256, 321
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	7 cut(s)	159, 182, 190, 227, 399, 549, 595
BspANI	GGCC	4 cut(s)	132, 213, 256, 321
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	597
BspLI	GGNNCC	3 cut(s)	212, 277, 592
BspMAI	CTGCAG	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	484, 565
BssECI	CCNNGG	2 cut(s)	316, 613
BssMI	GATC	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	826
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	3 cut(s)	135, 698, 880
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	1 cut(s)	227
BstFNI	CGCG	1 cut(s)	597
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 425, 969
BstNSI	RCATGY	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	3 cut(s)	168, 176, 854
BstV2I	GAAGAC	2 cut(s)	389, 571
BsuRI	GGCC	4 cut(s)	132, 213, 256, 321
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	347
Cfr13I	GGNCC	4 cut(s)	131, 211, 389, 716
CspCI	CAANNNNNGTGG	3 cut(s)	38, 441, 476
CviAII	CATG	4 cut(s)	107, 342, 871, 905
DdeI	CTNAG	3 cut(s)	135, 698, 880
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
DraI	TTTAAA	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
EciI	GGCGGA	2 cut(s)	205, 242
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	389, 716
Eco57I	CTGAAG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	378
FaeI	CATG	4 cut(s)	110, 345, 874, 908
FaiI	YATR	9 cut(s)	108, 219, 343, 356, 579, 794, 872, 906, 924
FatI	CATG	4 cut(s)	106, 341, 870, 904
FauI	CCCGC	2 cut(s)	392, 602
Fnu4HI	GCNGC	3 cut(s)	157, 165, 843
FokI	GGATG	1 cut(s)	234
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	3 cut(s)	157, 165, 843
FspBI	CTAG	3 cut(s)	252, 650, 668
GluI	GCNGC	3 cut(s)	157, 165, 843
HaeIII	GGCC	4 cut(s)	132, 213, 256, 321
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	4 cut(s)	110, 345, 874, 908
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HinfI	GANTC	3 cut(s)	435, 500, 533
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	2 cut(s)	450, 949
Hpy188III	TCNNGA	2 cut(s)	379, 650
Hpy8I	GTNNAC	2 cut(s)	450, 949
Hpy99I	CGWCG	2 cut(s)	176, 275
HpyAV	CCTTC	2 cut(s)	425, 516
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	156, 419, 629, 755, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 425, 969
HpyF3I	CTNAG	3 cut(s)	135, 698, 880
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	110, 345, 874, 908
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	3 cut(s)	161, 281, 615
LpnPI	CCDG	8 cut(s)	129, 135, 147, 372, 465, 546, 720, 786
Lsp1109I	GCAGC	3 cut(s)	168, 176, 854
LweI	GCATC	2 cut(s)	352, 844
MaeI	CTAG	3 cut(s)	252, 650, 668
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	4 cut(s)	46, 475, 551, 670
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	3 cut(s)	394, 576, 843
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	7 cut(s)	87, 111, 454, 526, 658, 730, 914
MlyI	GAGTC	1 cut(s)	542
MnlI	CCTC	6 cut(s)	67, 253, 326, 332, 707, 827
MseI	TTAA	5 cut(s)	198, 468, 783, 891, 982
MspA1I	CMGCKG	2 cut(s)	159, 549
MspI	CCGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	3 cut(s)	233, 425, 969
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	4 cut(s)	110, 345, 874, 908
NlaIV	GGNNCC	3 cut(s)	212, 277, 592
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	435, 500
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	158, 166, 844
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	389
PshBI	ATTAAT	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	212, 277, 592
PspPI	GGNCC	4 cut(s)	131, 211, 389, 716
PspPPI	RGGWCCY	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	158
SaqAI	TTAA	5 cut(s)	198, 468, 783, 891, 982
SatI	GCNGC	3 cut(s)	157, 165, 843
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	4 cut(s)	131, 211, 389, 716
SchI	GAGTC	1 cut(s)	542
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	2 cut(s)	352, 844
SfcI	CTRYAG	1 cut(s)	154
SinI	GGWCC	2 cut(s)	389, 716
SmlI	CTYRAG	2 cut(s)	69, 323
SmoI	CTYRAG	2 cut(s)	69, 323
Sse9I	AATT	7 cut(s)	87, 111, 454, 526, 658, 730, 914
SsiI	CCGC	7 cut(s)	159, 182, 190, 227, 399, 549, 595
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	3 cut(s)	252, 650, 668
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	3 cut(s)	712, 852, 941
TasI	AATT	7 cut(s)	87, 111, 454, 526, 658, 730, 914
TfiI	GAWTC	2 cut(s)	435, 500
Tru1I	TTAA	5 cut(s)	198, 468, 783, 891, 982
Tru9I	TTAA	5 cut(s)	198, 468, 783, 891, 982
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	3 cut(s)	156, 164, 842
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	123, 859, 908
TspGWI	ACGGA	2 cut(s)	602, 813
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	389, 716
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	3 cut(s)	111, 454, 914
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	1 cut(s)	345
XspI	CTAG	3 cut(s)	252, 650, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.