FvH4_6g19440

Vacuolar protein sorting-associated protein 55 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010180
Physical Location & Seq
Reverse (-)
12974514 .. 12979071
4558 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19440.t1

Sequence Viewer

Length: 372 bp
ATGGCGATGACCATAGAAGGACTTGCTTTTATGTTTTCAGCGAGCATCTTGCTACAGGTCCTGGCTTGTGCATTATACAACAATTGGTGGCCTATGTTATCTGCTCTCATGTATGTCCTGGTACCTATGCCCTGTTTATTCTTTGGTGGTGGTTCAACTCAGGTTTTATTTACGAGGGAGAGTGATGGGTGGATAAATGCTGCTAAGTTTCTGACTGGGGCATCAACTGTGGGGAGCCTAGCCATTCCTATAATTCTTAGACATGCTCATATGATTGAGACATCTGCTATGTGGATCGAATTCGTATCATTCTTCATATTTGTGTGCACCGTCATGTGTTTCCACCGTGCCAGCCTCGAAGACGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps55

Protein Analysis

124

Amino Acids

13.79

Weight (kDa)

5.08

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps55 PF04133 7 - 119 4.7e-32 Vacuolar protein sorting 55
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 121
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 1 cut(s) 123
AgsI TTSAA 1 cut(s) 156
AjnI CCWGG 2 cut(s) 60, 117
Alw21I GWGCWC 1 cut(s) 329
Alw26I GTCTC 1 cut(s) 272
Alw44I GTGCAC 1 cut(s) 325
AlwI GGATC 1 cut(s) 302
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 1 cut(s) 89
ApaLI GTGCAC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 299
Asp718I GGTACC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 58
AvaII GGWCC 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 329
BanI GGYRCC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 2 cut(s) 62, 119
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 53
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 62, 119
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 123, 236
BmrFI CCNGG 2 cut(s) 62, 119
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 2 cut(s) 54, 230
BmuI ACTGGG 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 2 cut(s) 62, 119
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 329
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 91
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 1 cut(s) 294
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 123, 236
BspPI GGATC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 220
BssMI GATC 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 62, 119
Bst4CI ACNGT 3 cut(s) 229, 331, 347
BstC8I GCNNGC 2 cut(s) 43, 352
BstDEI CTNAG 3 cut(s) 159, 204, 257
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 294
BstNI CCWGG 2 cut(s) 62, 119
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 60, 117
BstSFI CTRYAG 1 cut(s) 53
BstSLI GKGCMC 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 366
BsuRI GGCC 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 20
Cac8I GCNNGC 2 cut(s) 43, 352
CaiI CAGNNNCTG 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 122
CviAII CATG 3 cut(s) 109, 263, 334
CviJI RGCY 5 cut(s) 65, 91, 237, 242, 354
CviKI_1 RGCY 5 cut(s) 65, 91, 237, 242, 354
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 3 cut(s) 159, 204, 257
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 58
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 60, 117
FaeI CATG 3 cut(s) 112, 266, 337
FatI CATG 3 cut(s) 108, 262, 333
FauNDI CATATG 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 239
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 91
Hin1II CATG 3 cut(s) 112, 266, 337
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 1 cut(s) 213
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 3 cut(s) 229, 331, 347
HpyCH4V TGCA 2 cut(s) 71, 327
HpyF3I CTNAG 3 cut(s) 159, 204, 257
Hsp92II CATG 3 cut(s) 112, 266, 337
KpnI GGTACC 1 cut(s) 125
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 9 cut(s) 41, 47, 74, 104, 131, 145, 146, 201, 364
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 2 cut(s) 54, 230
MaeI CTAG 1 cut(s) 239
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 2 cut(s) 304, 371
MfeI CAATTG 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 3 cut(s) 82, 252, 299
MnlI CCTC 2 cut(s) 168, 365
MslI CAYNNNNRTG 2 cut(s) 320, 332
MspR9I CCNGG 2 cut(s) 62, 119
MunI CAATTG 1 cut(s) 82
MvaI CCWGG 2 cut(s) 62, 119
NdeI CATATG 1 cut(s) 270
NdeII GATC 1 cut(s) 294
NlaIII CATG 3 cut(s) 112, 266, 337
NlaIV GGNNCC 2 cut(s) 123, 236
NspI RCATGY 1 cut(s) 266
PkrI GCNGC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 60, 117
PspGI CCWGG 2 cut(s) 60, 117
PspN4I GGNNCC 2 cut(s) 123, 236
PspPI GGNCC 1 cut(s) 58
PspPPI RGGWCCY 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 61
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 2 cut(s) 320, 332
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 62, 119
SduI GDGCHC 1 cut(s) 329
SetI ASST 3 cut(s) 60, 127, 165
SfaNI GCATC 2 cut(s) 54, 230
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 58
SmiMI CAYNNNNRTG 2 cut(s) 320, 332
Sse9I AATT 3 cut(s) 82, 252, 299
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 60, 117
TaaI ACNGT 3 cut(s) 229, 331, 347
TaqI TCGA 2 cut(s) 297, 357
TasI AATT 3 cut(s) 82, 252, 299
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 304
VneI GTGCAC 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 299
XceI RCATGY 1 cut(s) 266
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.