Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010282

Physical Location & Seq

Genomic Coordinates Forward (+)

3672036 .. 3674159

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCGTCTGTTGCTTCTTCAACTACTCTCATCTCTTCTCCCTCTTCTAGGGTTTTTCCAGCAAAGTCTTCACTTTCCTCTCCATCTGTTTCTTTCCTTCGAACCCTTTCTTCTCCTTCCGCATCTGCTTCTCTCCGCTCCGGATTTGCTCGACGCTCTTCCCTCAGCTCCACTTCTCGTCGGAGCTTTGCTGTCAAAGCCCAGGCCGATGATCTTCCACTGGTTGGAAACAAGGCGCCTGATTTTGAGGCAGAGGCTGTGTTTGATCAAGAGTTCATCAAGGTTAAGCTCTCTGATTACATTGGAAAGAAGTATGTGATTCTCTTTTTCTACCCATTGGACTTTACTTTCGTCTGCCCAACAGAGATTACTGCCTTCAGTGACCGGCATTCAGAATTTGAGAAGTTGAACACCGAAGTATTAGGTGTTTCTGTCGATAGTGTGTTCTCTCACCTTGCATGGGTCCAAACAGACAGGAAATCTGGAGGGCTTGGTGATCTGAACTATCCCCTTATTTCAGATGTCACTAAATCAATCTCAAAGTCGTTCGGAGTGCTCATCCATGATCAGGGAATAGCACTGAGAGGACTTTTCATAATCGACAAGGAAGGAGTGATCCAACATTCCACCATCAACAATCTTGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTACATCCAGGAAAACCCGGATGAAGTCTGCCCAGCAGGATGGAAGCCGGGTGAGAAGTCAATGAAACCCGACCCAAAACTCAGCAAAGAGTACTTCTCAGCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010319 GO:0016209 GO:0016491 GO:0016684 GO:0031967 GO:0031975 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0051920 GO:0055114 GO:0070887 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

266

Amino Acids

29.09

Weight (kDa)

6.91

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	75 - 208	6.7e-42	AhpC/TSA family
Redoxin	PF08534	75 - 211	4.3e-15	Redoxin
1-cysPrx_C	PF10417	229 - 264	1.9e-10	C-terminal domain of 1-Cys peroxiredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11630 AT5G06290 AT5G06290
fragaria_vesca	FvH4_6g20020 FvH4_6g20020
malus_domestica	MD12G1037300.v1.1 MD14G1036400.v1.1
prunus_persica	Prupe.7G097900_v2.0.a1
pyrus_communis	pycom12g03230 pycom14g03190
rosa_chinensis	RchiOBHm_Chr3g0475471
rosa_laevigata	RLG00000023842
rosa_multiflora	Rmu_sc0015717.1_g000003 Rmu_sc0016637.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406290
rosa_rugosa	Rorug03G0149000
rosa_samantha	Rh3AG199300 Rh3BG229100 Rh3CG223500 Rh3DG224400
rosa_wichuraiana	Rw3G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AccB7I	CCANNNNNTGG	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	138
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	2 cut(s)	120, 136
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	361
AcyI	GRCGYC	2 cut(s)	5, 236
AfaI	GTAC	2 cut(s)	695, 785
AfiI	CCNNNNNNNGG	4 cut(s)	48, 224, 460, 568
AgsI	TTSAA	2 cut(s)	21, 409
AjnI	CCWGG	3 cut(s)	201, 681, 699
AluBI	AGCT	4 cut(s)	168, 186, 289, 794
AluI	AGCT	4 cut(s)	168, 186, 289, 794
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	1 cut(s)	610
AlwNI	CAGNNNCTG	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	140
AoxI	GGCC	2 cut(s)	204, 649
ApoI	RAATTY	1 cut(s)	395
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp700I	GAANNNNTTC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	463
AsuC2I	CCSGG	2 cut(s)	710, 741
AsuHPI	GGTGA	3 cut(s)	443, 506, 755
AsuII	TTCGAA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	558
BbvCI	CCTCAGC	1 cut(s)	164
BccI	CCATC	3 cut(s)	91, 638, 726
BciT130I	CCWGG	3 cut(s)	203, 683, 701
BclI	TGATCA	2 cut(s)	265, 565
BcnI	CCSGG	2 cut(s)	710, 741
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	239
BmcAI	AGTACT	1 cut(s)	785
Bme1390I	CCNGG	5 cut(s)	203, 683, 701, 710, 741
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	2 cut(s)	237, 464
BmrFI	CCNGG	5 cut(s)	203, 683, 701, 710, 741
BmsI	GCATC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	60
BplI	GAGNNNNNCTC	1 cut(s)	773
BpmI	CTGGAG	2 cut(s)	504, 665
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	100
BpuMI	CCSGG	2 cut(s)	710, 741
BsaHI	GRCGYC	2 cut(s)	5, 236
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 224, 460, 568
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	3 cut(s)	203, 683, 701
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	4 cut(s)	558, 696, 718, 737
BseLI	CCNNNNNNNGG	4 cut(s)	48, 224, 460, 568
BseMII	CTCAG	3 cut(s)	178, 572, 787
BseNI	ACTGG	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	724
BshFI	GGCC	2 cut(s)	206, 651
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	558
BsiSI	CCGG	4 cut(s)	141, 385, 710, 740
BslI	CCNNNNNNNGG	4 cut(s)	48, 224, 460, 568
BsmAI	GTCTC	1 cut(s)	659
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	206, 651
Bsp119I	TTCGAA	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	5 cut(s)	211, 265, 496, 565, 615
BspACI	CCGC	2 cut(s)	120, 136
BspANI	GGCC	2 cut(s)	206, 651
BspCNI	CTCAG	3 cut(s)	177, 573, 786
BspEI	TCCGGA	1 cut(s)	140
BspLI	GGNNCC	2 cut(s)	237, 464
BspPI	GGATC	1 cut(s)	610
BspQI	GCTCTTC	1 cut(s)	163
BspT104I	TTCGAA	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	5 cut(s)	211, 265, 496, 565, 615
BssNI	GRCGYC	2 cut(s)	5, 236
Bst2UI	CCWGG	3 cut(s)	203, 683, 701
Bst4CI	ACNGT	1 cut(s)	693
Bst6I	CTCTTC	3 cut(s)	40, 49, 163
BstACI	GRCGYC	2 cut(s)	5, 236
BstBI	TTCGAA	1 cut(s)	100
BstDEI	CTNAG	4 cut(s)	164, 581, 773, 790
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstF5I	GGATG	4 cut(s)	558, 696, 718, 737
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	5 cut(s)	214, 268, 499, 568, 618
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	5 cut(s)	211, 265, 496, 565, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 197
BstNI	CCWGG	3 cut(s)	203, 683, 701
BstSCI	CCNGG	5 cut(s)	201, 681, 699, 708, 739
BstV2I	GAAGAC	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	732
BsuRI	GGCC	2 cut(s)	206, 651
BtsCI	GGATG	4 cut(s)	558, 696, 718, 737
BtsIMutI	CAGTG	3 cut(s)	218, 385, 578
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	238
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	463
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	694, 784
CviAII	CATG	2 cut(s)	459, 563
CviQI	GTAC	2 cut(s)	694, 784
DdeI	CTNAG	4 cut(s)	164, 581, 773, 790
DinI	GGCGCC	1 cut(s)	237
DpnI	GATC	5 cut(s)	213, 267, 498, 567, 617
DpnII	GATC	5 cut(s)	211, 265, 496, 565, 615
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	3 cut(s)	40, 49, 163
EarI	CTCTTC	3 cut(s)	40, 49, 163
Eco47I	GGWCC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoRII	CCWGG	3 cut(s)	201, 681, 699
EgeI	GGCGCC	1 cut(s)	237
EheI	GGCGCC	1 cut(s)	237
FaeI	CATG	2 cut(s)	462, 566
FaiI	YATR	4 cut(s)	315, 460, 564, 596
FatI	CATG	2 cut(s)	458, 562
FbaI	TGATCA	2 cut(s)	265, 565
FokI	GGATG	4 cut(s)	545, 683, 725, 744
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	237
GsaI	CCCAGC	1 cut(s)	728
GsuI	CTGGAG	2 cut(s)	504, 665
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	206, 651
HapII	CCGG	4 cut(s)	141, 385, 710, 740
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	238
Hin1I	GRCGYC	2 cut(s)	5, 236
Hin1II	CATG	2 cut(s)	462, 566
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	1 cut(s)	319
HpaII	CCGG	4 cut(s)	141, 385, 710, 740
HphI	GGTGA	3 cut(s)	443, 506, 755
Hpy188I	TCNGA	6 cut(s)	183, 295, 394, 501, 520, 551
Hpy188III	TCNNGA	3 cut(s)	141, 269, 483
Hpy99I	CGWCG	2 cut(s)	156, 183
HpyAV	CCTTC	4 cut(s)	107, 126, 385, 602
HpyCH4III	ACNGT	1 cut(s)	693
HpyCH4V	TGCA	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 197
HpyF3I	CTNAG	4 cut(s)	164, 581, 773, 790
Hsp92I	GRCGYC	2 cut(s)	5, 236
Hsp92II	CATG	2 cut(s)	462, 566
HspAI	GCGC	1 cut(s)	236
KasI	GGCGCC	1 cut(s)	235
Kpn2I	TCCGGA	1 cut(s)	140
Ksp22I	TGATCA	2 cut(s)	265, 565
Kzo9I	GATC	5 cut(s)	211, 265, 496, 565, 615
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	3 cut(s)	143, 173, 183
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	380, 523
MalI	GATC	5 cut(s)	213, 267, 498, 567, 617
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	5 cut(s)	211, 265, 496, 565, 615
MboII	GAAGA	7 cut(s)	9, 27, 36, 60, 102, 150, 206
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	1 cut(s)	395
Mly113I	GGCGCC	1 cut(s)	236
MmeI	TCCRAC	3 cut(s)	161, 205, 643
MnlI	CCTC	8 cut(s)	52, 88, 173, 241, 247, 479, 578, 689
MroI	TCCGGA	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	106
MseI	TTAA	1 cut(s)	285
MspI	CCGG	4 cut(s)	141, 385, 710, 740
MspR9I	CCNGG	5 cut(s)	203, 683, 701, 710, 741
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	3 cut(s)	203, 683, 701
MwoI	GCNNNNNNNGC	2 cut(s)	11, 197
NarI	GGCGCC	1 cut(s)	236
NciI	CCSGG	2 cut(s)	710, 741
NdeII	GATC	5 cut(s)	211, 265, 496, 565, 615
NlaIII	CATG	2 cut(s)	462, 566
NlaIV	GGNNCC	2 cut(s)	237, 464
NmuCI	GTSAC	2 cut(s)	380, 523
NspV	TTCGAA	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	163
PctI	GAATGC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	699
PluTI	GGCGCC	1 cut(s)	239
Psp6I	CCWGG	3 cut(s)	201, 681, 699
PspFI	CCCAGC	1 cut(s)	724
PspGI	CCWGG	3 cut(s)	201, 681, 699
PspN4I	GGNNCC	2 cut(s)	237, 464
PspPI	GGNCC	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	695, 785
RsaNI	GTAC	2 cut(s)	694, 784
SapI	GCTCTTC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	285
Sau3AI	GATC	5 cut(s)	211, 265, 496, 565, 615
Sau96I	GGNCC	1 cut(s)	463
ScaI	AGTACT	1 cut(s)	785
ScrFI	CCNGG	5 cut(s)	203, 683, 701, 710, 741
SduI	GDGCHC	1 cut(s)	558
SetI	ASST	7 cut(s)	170, 188, 285, 291, 427, 456, 796
SfaNI	GCATC	1 cut(s)	131
SfoI	GGCGCC	1 cut(s)	237
SfuI	TTCGAA	1 cut(s)	100
SinI	GGWCC	1 cut(s)	463
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	2 cut(s)	120, 136
SspDI	GGCGCC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	5 cut(s)	201, 681, 699, 708, 739
TaaI	ACNGT	1 cut(s)	693
TaqI	TCGA	4 cut(s)	100, 151, 435, 600
TasI	AATT	1 cut(s)	395
TatI	WGTACW	2 cut(s)	693, 783
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	3 cut(s)	225, 385, 585
TseFI	GTSAC	2 cut(s)	380, 523
Tsp45I	GTSAC	2 cut(s)	380, 523
TspDTI	ATGAA	4 cut(s)	265, 583, 729, 770
TspRI	CASTG	3 cut(s)	225, 385, 585
Van91I	CCANNNNNTGG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	463
XagI	CCTNNNNNAGG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	1 cut(s)	48
ZrmI	AGTACT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.