Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010282

Physical Location & Seq

Genomic Coordinates Reverse (-)

29090676 .. 29093015

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCGCCTCAACCGCTCTCATCTCCTCCACCCCTAGGGCTTTCGCCTCCGTCAAATCCTCATCTCTCGGCGCCTCTTCCATCTCCAAGCCCCAATCCCAAACCCTAACATTCCCCAAATCCTTCACCGGCCTCCGCCTCCCATCCCCCTCCCGCTCCTTCTCTCTCTCCCGCGGCTCCCATTCCGCCAAGTCCTTCGCCGTCAAAGCTTCCGCTGAGCTTCCGTTGGTTGGAAACGTTGCGCCGGATTTTGAAGCTGAGGCTGTTTTTGACCAGGAATTCATCAAGGTCAAATTGTCTGAATACATTGGGAAGAAATATGTGATTCTGTTTTTCTATCCTTTGGATTTCACATTTGTTTGCCCAACAGAGATTACTGCTTTCAGTGACCGTCATGCTGAATTCGAGGCACTCAACACAGAAGTCTTGGGTGTTTCAGTCGACAGTGTTTTTTCGCATCTTGCATGGGTCCAAACAGATAGGAAATCAGGCGGTCTTGGTGACTTGAAGTATCCGTTGGTCTCTGATGTCACCAAATCAATTTCAAAATCTTATGGTGTACTGATCCCAGACCAGGGAATTGCATTGAGAGGACTCTTCATTATTGACAAGGAAGGTGTTATTCAACACTCCACCATTAACAATCTTGCCATTGGCCGAAGTGTGGATGAGACTAAGAGAACGCTCCAGGCCTTGCAGTTTGTGCAGGACAACCCTGATGAGGTTTGCCCCGCTGGGTGGAAGCCTGGGGAGAAGTCCATGAAGCCAGACCCCAAGCTCAGCAAAGAGTACTTCTCCGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010319 GO:0016209 GO:0016491 GO:0016684 GO:0031967 GO:0031975 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0051920 GO:0055114 GO:0070887 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

269

Amino Acids

29.12

Weight (kDa)

7.73

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	77 - 210	5.4e-41	AhpC/TSA family
Redoxin	PF08534	77 - 214	1.9e-14	Redoxin
1-cysPrx_C	PF10417	231 - 266	6.7e-11	C-terminal domain of 1-Cys peroxiredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11630 AT5G06290 AT5G06290
fragaria_vesca	FvH4_6g20020 FvH4_6g20020
malus_domestica	MD12G1037300.v1.1 MD14G1036400.v1.1
prunus_persica	Prupe.7G097900_v2.0.a1
pyrus_communis	pycom12g03230 pycom14g03190
rosa_chinensis	RchiOBHm_Chr3g0475471
rosa_laevigata	RLG00000023842
rosa_multiflora	Rmu_sc0015717.1_g000003 Rmu_sc0016637.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406290
rosa_rugosa	Rorug03G0149000
rosa_samantha	Rh3AG199300 Rh3BG229100 Rh3CG223500 Rh3DG224400
rosa_wichuraiana	Rw3G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccBSI	CCGCTC	2 cut(s)	17, 156
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	174
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	1 cut(s)	559
AcoI	YGGCCR	2 cut(s)	3, 655
AcsI	RAATTY	2 cut(s)	278, 401
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	2 cut(s)	561, 791
AfiI	CCNNNNNNNGG	7 cut(s)	36, 230, 574, 575, 664, 721, 738
AgsI	TTSAA	4 cut(s)	254, 508, 546, 626
AjnI	CCWGG	4 cut(s)	273, 573, 687, 745
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	4 cut(s)	209, 220, 257, 778
AluI	AGCT	4 cut(s)	209, 220, 257, 778
Alw26I	GTCTC	2 cut(s)	526, 665
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	4 cut(s)	3, 130, 655, 690
ApoI	RAATTY	2 cut(s)	278, 401
AspA2I	CCTAGG	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	74, 244
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	3 cut(s)	118, 512, 523
AvaII	GGWCC	1 cut(s)	469
AvrII	CCTAGG	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	71
BbvCI	CCTCAGC	1 cut(s)	258
BccI	CCATC	2 cut(s)	89, 151
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	4 cut(s)	275, 575, 689, 747
BciVI	GTATCC	1 cut(s)	522
BcoDI	GTCTC	2 cut(s)	526, 665
BfaI	CTAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	522
BisI	GCNGC	2 cut(s)	6, 175
BlnI	CCTAGG	1 cut(s)	35
BlpI	GCTNAGC	2 cut(s)	216, 779
BlsI	GCNGC	2 cut(s)	7, 176
BmcAI	AGTACT	1 cut(s)	791
Bme1390I	CCNGG	4 cut(s)	275, 575, 689, 747
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	3 cut(s)	73, 178, 470
BmrFI	CCNGG	4 cut(s)	275, 575, 689, 747
BmsI	GCATC	1 cut(s)	466
BplI	GAGNNNNNCTC	1 cut(s)	779
BpmI	CTGGAG	1 cut(s)	671
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu1102I	GCTNAGC	2 cut(s)	216, 779
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	4 cut(s)	35, 172, 574, 746
Bsc4I	CCNNNNNNNGG	7 cut(s)	36, 230, 574, 575, 664, 721, 738
Bse118I	RCCGGY	1 cut(s)	128
BseBI	CCWGG	4 cut(s)	275, 575, 689, 747
BseDI	CCNNGG	4 cut(s)	35, 172, 574, 746
BseGI	GGATG	2 cut(s)	143, 673
BseLI	CCNNNNNNNGG	7 cut(s)	36, 230, 574, 575, 664, 721, 738
BseMII	CTCAG	3 cut(s)	207, 249, 793
BseRI	GAGGAG	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	734
BsgI	GTGCAG	1 cut(s)	725
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	4 cut(s)	5, 132, 657, 692
BshNI	GGYRCC	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	129, 245
BslI	CCNNNNNNNGG	7 cut(s)	36, 230, 574, 575, 664, 721, 738
BsmAI	GTCTC	2 cut(s)	526, 665
BsnI	GGCC	4 cut(s)	5, 132, 657, 692
Bso31I	GGTCTC	1 cut(s)	526
Bsp143I	GATC	1 cut(s)	564
Bsp1720I	GCTNAGC	2 cut(s)	216, 779
BspANI	GGCC	4 cut(s)	5, 132, 657, 692
BspCNI	CTCAG	3 cut(s)	208, 250, 792
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	73, 178, 470
BspPI	GGATC	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	526
BsrBI	CCGCTC	2 cut(s)	17, 156
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	4 cut(s)	35, 172, 574, 746
BssMI	GATC	1 cut(s)	564
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	4 cut(s)	275, 575, 689, 747
Bst4CI	ACNGT	2 cut(s)	392, 446
Bst6I	CTCTTC	2 cut(s)	82, 602
BstACI	GRCGYC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstDEI	CTNAG	4 cut(s)	216, 258, 675, 779
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	143, 673
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 244
BstKTI	GATC	1 cut(s)	567
BstMAI	GTCTC	2 cut(s)	526, 665
BstMBI	GATC	1 cut(s)	564
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 206, 703
BstNI	CCWGG	4 cut(s)	275, 575, 689, 747
BstSCI	CCNGG	4 cut(s)	273, 573, 687, 745
BstUI	CGCG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	522
BsuRI	GGCC	4 cut(s)	5, 132, 657, 692
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	143, 673
BtsIMutI	CAGTG	2 cut(s)	391, 451
CfoI	GCGC	2 cut(s)	74, 244
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	469
Cfr42I	CCGCGG	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	560, 790
CviAII	CATG	3 cut(s)	395, 465, 760
CviQI	GTAC	2 cut(s)	560, 790
DdeI	CTNAG	4 cut(s)	216, 258, 675, 779
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
EaeI	YGGCCR	2 cut(s)	3, 655
Eam1104I	CTCTTC	2 cut(s)	82, 602
EarI	CTCTTC	2 cut(s)	82, 602
EciI	GGCGGA	2 cut(s)	125, 175
Eco130I	CCWWGG	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	692
Eco31I	GGTCTC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	469
EcoRI	GAATTC	2 cut(s)	278, 401
EcoRII	CCWGG	4 cut(s)	273, 573, 687, 745
EcoT14I	CCWWGG	1 cut(s)	35
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	3 cut(s)	398, 468, 763
FaiI	YATR	6 cut(s)	321, 396, 466, 555, 761, 805
FatI	CATG	3 cut(s)	394, 464, 759
FauI	CCCGC	3 cut(s)	161, 179, 739
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	6, 175
FokI	GGATG	2 cut(s)	130, 680
Fsp4HI	GCNGC	2 cut(s)	6, 175
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	2 cut(s)	73, 243
GluI	GCNGC	2 cut(s)	6, 175
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	1 cut(s)	671
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	5, 132, 657, 692
HapII	CCGG	2 cut(s)	129, 245
HhaI	GCGC	2 cut(s)	74, 244
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	398, 468, 763
Hin6I	GCGC	2 cut(s)	72, 242
HinP1I	GCGC	2 cut(s)	72, 242
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	2 cut(s)	325, 594
HpaII	CCGG	2 cut(s)	129, 245
HphI	GGTGA	3 cut(s)	118, 512, 523
Hpy166II	GTNNAC	2 cut(s)	442, 560
Hpy188I	TCNGA	2 cut(s)	301, 526
Hpy8I	GTNNAC	2 cut(s)	442, 560
HpyAV	CCTTC	4 cut(s)	133, 169, 205, 608
HpyCH4III	ACNGT	2 cut(s)	392, 446
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	464, 584, 697, 706
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 206, 703
HpyF3I	CTNAG	4 cut(s)	216, 258, 675, 779
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	398, 468, 763
HspAI	GCGC	2 cut(s)	72, 242
KasI	GGCGCC	1 cut(s)	71
KspI	CCGCGG	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	564
LmnI	GCTCC	3 cut(s)	161, 182, 690
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	3 cut(s)	386, 500, 529
MalI	GATC	1 cut(s)	566
MbiI	CCGCTC	2 cut(s)	17, 156
MboI	GATC	1 cut(s)	564
MboII	GAAGA	3 cut(s)	69, 325, 589
MluCI	AATT	5 cut(s)	278, 293, 401, 540, 579
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	588
MmeI	TCCRAC	1 cut(s)	211
MseI	TTAA	1 cut(s)	639
MspA1I	CMGCKG	3 cut(s)	174, 215, 734
MspI	CCGG	2 cut(s)	129, 245
MspR9I	CCNGG	4 cut(s)	275, 575, 689, 747
MvaI	CCWGG	4 cut(s)	275, 575, 689, 747
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	14, 206, 703
NarI	GGCGCC	1 cut(s)	72
NdeII	GATC	1 cut(s)	564
NlaIII	CATG	3 cut(s)	398, 468, 763
NlaIV	GGNNCC	3 cut(s)	73, 178, 470
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	3 cut(s)	386, 500, 529
PceI	AGGCCT	1 cut(s)	692
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	7, 176
PleI	GAGTC	1 cut(s)	588
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	588
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	4 cut(s)	273, 573, 687, 745
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	4 cut(s)	273, 573, 687, 745
PspN4I	GGNNCC	3 cut(s)	73, 178, 470
PspPI	GGNCC	1 cut(s)	469
RsaI	GTAC	2 cut(s)	561, 791
RsaNI	GTAC	2 cut(s)	560, 790
SacII	CCGCGG	1 cut(s)	175
SalI	GTCGAC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	2 cut(s)	6, 175
Sau3AI	GATC	1 cut(s)	564
Sau96I	GGNCC	1 cut(s)	469
ScaI	AGTACT	1 cut(s)	791
SchI	GAGTC	1 cut(s)	588
ScrFI	CCNGG	4 cut(s)	275, 575, 689, 747
SetI	ASST	8 cut(s)	211, 222, 240, 259, 291, 619, 726, 780
SfaNI	GCATC	1 cut(s)	466
SfoI	GGCGCC	1 cut(s)	73
Sfr303I	CCGCGG	1 cut(s)	175
SgrBI	CCGCGG	1 cut(s)	175
SinI	GGWCC	1 cut(s)	469
Sse9I	AATT	5 cut(s)	278, 293, 401, 540, 579
SseBI	AGGCCT	1 cut(s)	692
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	692
StyD4I	CCNGG	4 cut(s)	273, 573, 687, 745
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	392, 446
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	405, 441
TasI	AATT	5 cut(s)	278, 293, 401, 540, 579
TatI	WGTACW	2 cut(s)	559, 789
TauI	GCSGC	2 cut(s)	8, 177
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	2 cut(s)	391, 451
TseFI	GTSAC	3 cut(s)	386, 500, 529
Tsp45I	GTSAC	3 cut(s)	386, 500, 529
TspDTI	ATGAA	3 cut(s)	271, 589, 776
TspGWI	ACGGA	3 cut(s)	40, 213, 504
TspRI	CASTG	2 cut(s)	391, 451
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	278, 401
XmaJI	CCTAGG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.