Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015717.1

Orthogroup ID

OG0010282

Physical Location & Seq

Genomic Coordinates Reverse (-)

4656 .. 5395

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015717.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgatgagcaccacctttgagccttatgcttatctaagtcatttttcgcatcttgcatgggtccaaacagataggaaatcaggcggtcttggtgacttgaagtatccattggtctctgatgtcaccaaatcaatttcaaaatcttatggtgtactgatcccagaccagggaatcgcattgagaggactcttcattattgacaaggaaggtgttattcaacattccaccattaacaatcttgccatcggccgaagtgtggatgagactaagagaacgctccaggccttgcagtttgtgcaggacaaccctgatgaggtttgccccgctgggtggaagcctggggagaagtccatgaagccagaccccaagctcagcaaagagtacttctctgcaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010319 GO:0016209 GO:0016491 GO:0016684 GO:0031967 GO:0031975 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0051920 GO:0055114 GO:0070887 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

132

Amino Acids

14.66

Weight (kDa)

6.82

Isoelectric Point (pI)

24.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11630 AT5G06290 AT5G06290
fragaria_vesca	FvH4_6g20020 FvH4_6g20020
malus_domestica	MD12G1037300.v1.1 MD14G1036400.v1.1
prunus_persica	Prupe.7G097900_v2.0.a1
pyrus_communis	pycom12g03230 pycom14g03190
rosa_chinensis	RchiOBHm_Chr3g0475471
rosa_laevigata	RLG00000023842
rosa_multiflora	Rmu_sc0015717.1_g000003 Rmu_sc0016637.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406290
rosa_rugosa	Rorug03G0149000
rosa_samantha	Rh3AG199300 Rh3BG229100 Rh3CG223500 Rh3DG224400
rosa_wichuraiana	Rw3G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	84, 324
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	247
AfaI	GTAC	2 cut(s)	153, 383
AfiI	CCNNNNNNNGG	5 cut(s)	166, 167, 256, 313, 330
AgsI	TTSAA	3 cut(s)	100, 138, 218
AjnI	CCWGG	3 cut(s)	165, 279, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	118, 257
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	2 cut(s)	247, 282
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	104, 115
AvaII	GGWCC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	11
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	3 cut(s)	167, 281, 339
BciVI	GTATCC	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	118, 257
BfuI	GTATCC	1 cut(s)	114
BlpI	GCTNAGC	1 cut(s)	371
BmcAI	AGTACT	1 cut(s)	383
Bme1390I	CCNGG	3 cut(s)	167, 281, 339
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	3 cut(s)	167, 281, 339
BmsI	GCATC	1 cut(s)	58
BplI	GAGNNNNNCTC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	166, 338
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 167, 256, 313, 330
BseBI	CCWGG	3 cut(s)	167, 281, 339
BseDI	CCNNGG	2 cut(s)	166, 338
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	5 cut(s)	166, 167, 256, 313, 330
BseMII	CTCAG	1 cut(s)	385
BseX3I	CGGCCG	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	2 cut(s)	249, 284
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	11
BslI	CCNNNNNNNGG	5 cut(s)	166, 167, 256, 313, 330
BsmAI	GTCTC	2 cut(s)	118, 257
BsnI	GGCC	2 cut(s)	249, 284
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	156
Bsp1720I	GCTNAGC	1 cut(s)	371
BspACI	CCGC	2 cut(s)	84, 324
BspANI	GGCC	2 cut(s)	249, 284
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	166, 338
BssMI	GATC	1 cut(s)	156
Bst2UI	CCWGG	3 cut(s)	167, 281, 339
Bst6I	CTCTTC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	35, 267, 371
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	2 cut(s)	118, 257
BstMBI	GATC	1 cut(s)	156
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	3 cut(s)	167, 281, 339
BstSCI	CCNGG	3 cut(s)	165, 279, 337
BstZI	CGGCCG	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	249, 284
BtsCI	GGATG	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	152, 382
CviAII	CATG	2 cut(s)	57, 352
CviJI	RGCY	6 cut(s)	22, 249, 284, 337, 358, 370
CviKI_1	RGCY	6 cut(s)	22, 249, 284, 337, 358, 370
CviQI	GTAC	2 cut(s)	152, 382
DdeI	CTNAG	3 cut(s)	35, 267, 371
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	247
EagI	CGGCCG	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EclXI	CGGCCG	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	247
EcoRII	CCWGG	3 cut(s)	165, 279, 337
FaeI	CATG	2 cut(s)	60, 355
FaiI	YATR	5 cut(s)	27, 58, 147, 353, 397
FatI	CATG	2 cut(s)	56, 351
FauI	CCCGC	1 cut(s)	331
FokI	GGATG	1 cut(s)	272
GsaI	CCCAGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	249, 284
Hin1II	CATG	2 cut(s)	60, 355
HinfI	GANTC	2 cut(s)	171, 186
HphI	GGTGA	2 cut(s)	104, 115
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	200
HpyCH4V	TGCA	4 cut(s)	56, 289, 298, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	3 cut(s)	35, 267, 371
Hsp92II	CATG	2 cut(s)	60, 355
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	282
LweI	GCATC	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	92, 121
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	176, 307
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	326
MspR9I	CCNGG	3 cut(s)	167, 281, 339
MvaI	CCWGG	3 cut(s)	167, 281, 339
MwoI	GCNNNNNNNGC	1 cut(s)	295
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	60, 355
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	2 cut(s)	92, 121
PceI	AGGCCT	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	171
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	165, 279, 337
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	3 cut(s)	165, 279, 337
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	61
RsaI	GTAC	2 cut(s)	153, 383
RsaNI	GTAC	2 cut(s)	152, 382
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	61
ScaI	AGTACT	1 cut(s)	383
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	3 cut(s)	167, 281, 339
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	4 cut(s)	17, 211, 318, 372
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	132
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	2 cut(s)	84, 324
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	3 cut(s)	165, 279, 337
TasI	AATT	1 cut(s)	132
TatI	WGTACW	2 cut(s)	151, 381
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseFI	GTSAC	2 cut(s)	92, 121
Tsp45I	GTSAC	2 cut(s)	92, 121
TspDTI	ATGAA	2 cut(s)	181, 368
VpaK11BI	GGWCC	1 cut(s)	61
ZrmI	AGTACT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.