Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010282

Physical Location & Seq

Genomic Coordinates Forward (+)

2908747 .. 2911024

Gene Structure 2278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03230.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTGCCTCCACCGCCGCCCTCATCTCCTTCGCCCCCTCCCGCGCTTTCTCCTCCTCCAAATCCACCCCTCTCGTCGCCGCCTTCTCCAAACCTATCTCCCAAACCCTAAACTTCCCCAAATCCATCCACGGCCTCCGCCTCCCGCGCGTCGCCCATTCTGCTTCCCTCCCCCGCGGCGGCTCCCACACTCGCAAGTCCTTCATCGTCAAAGCCTCCGCCGGCGAGCTTCCCCTCGTCGGAAATGTTGCTCCTGATTTCGAAGCCGAGGCTGTTTTCGACCAAGAATTCGTCAATGTCAAGCTCTCTGAGTACATTGGGAAGAAGTATGTGATTCTCTTTTTCTACCCATTGGACTTCACATTTGTTTGTCCTACAGAAATCACCGCTTTCAGCGACCGTCACGCCGAGTTTGCGGAGCTCAACACAGAAATCTTGGGTGTTTCAGTTGACAGTGTGTTTTCCCACCTTGCATGGGTCCAAACCGATAGGAAATCTGGCGGTCTTGGTGACTTGAACTATCCATTGATCTCTGATGTCACCAAGTCAATTTCAAAATCGTATGGTGTGCTGATCCCAGATCAGGGAATCGCTTTGAGAGGACTCTTCATTATTGACAAGGAAGGCGTCATTCAACACTCCACCATCAACAATCTTGCCATTGGCCGTAGTGTGGATGAGACTAAGAGAACGCTCCAGGCCTTGCAGTACGTGCAGGACAATCCCGATGAAGTTTGCCCTGCAGGGTGGAAGCCCGGGGAGAAGTCCATGAAGCCAGACCCCAAGGGCAGCAAAGAGTACTTCTCCGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010319 GO:0016209 GO:0016491 GO:0016684 GO:0031967 GO:0031975 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0051920 GO:0055114 GO:0070887 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

272

Amino Acids

29.48

Weight (kDa)

7.02

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11630 AT5G06290 AT5G06290
fragaria_vesca	FvH4_6g20020 FvH4_6g20020
malus_domestica	MD12G1037300.v1.1 MD14G1036400.v1.1
prunus_persica	Prupe.7G097900_v2.0.a1
pyrus_communis	pycom12g03230 pycom14g03190
rosa_chinensis	RchiOBHm_Chr3g0475471
rosa_laevigata	RLG00000023842
rosa_multiflora	Rmu_sc0015717.1_g000003 Rmu_sc0016637.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406290
rosa_rugosa	Rorug03G0149000
rosa_samantha	Rh3AG199300 Rh3BG229100 Rh3CG223500 Rh3DG224400
rosa_wichuraiana	Rw3G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	45, 148, 150, 177
AclWI	GGATC	1 cut(s)	568
AcoI	YGGCCR	1 cut(s)	664
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	627
AfaI	GTAC	3 cut(s)	314, 710, 800
AfiI	CCNNNNNNNGG	6 cut(s)	179, 239, 475, 583, 584, 673
AgsI	TTSAA	3 cut(s)	517, 555, 635
AjnI	CCWGG	1 cut(s)	696
AluBI	AGCT	3 cut(s)	229, 304, 421
AluI	AGCT	3 cut(s)	229, 304, 421
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	674
AlwI	GGATC	1 cut(s)	568
Ama87I	CYCGRG	1 cut(s)	755
AoxI	GGCC	3 cut(s)	133, 664, 699
ApeKI	GCWGC	2 cut(s)	5, 789
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	4 cut(s)	272, 304, 347, 379
AspLEI	GCGC	2 cut(s)	47, 150
AspS9I	GGNCC	1 cut(s)	478
AsuC2I	CCSGG	2 cut(s)	756, 757
AsuHPI	GGTGA	3 cut(s)	376, 521, 532
AsuII	TTCGAA	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	755
AvaII	GGWCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	801
BccI	CCATC	2 cut(s)	134, 653
BceAI	ACGGC	2 cut(s)	148, 651
BciT130I	CCWGG	1 cut(s)	698
BcnI	CCSGG	2 cut(s)	756, 757
BcoDI	GTCTC	1 cut(s)	674
BfmI	CTRYAG	2 cut(s)	375, 741
BisI	GCNGC	6 cut(s)	6, 18, 81, 178, 181, 790
BlsI	GCNGC	6 cut(s)	7, 19, 82, 179, 182, 791
BmcAI	AGTACT	1 cut(s)	800
Bme1390I	CCNGG	3 cut(s)	698, 756, 757
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	755
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	2 cut(s)	184, 479
BmrFI	CCNGG	3 cut(s)	698, 756, 757
BplI	GAGNNNNNCTC	1 cut(s)	788
BpmI	CTGGAG	1 cut(s)	680
Bpu14I	TTCGAA	1 cut(s)	261
BpuMI	CCSGG	2 cut(s)	756, 757
BsaAI	YACGTR	1 cut(s)	712
BsaHI	GRCGYC	1 cut(s)	627
BsaJI	CCNNGG	6 cut(s)	130, 175, 267, 755, 756, 783
Bsc4I	CCNNNNNNNGG	6 cut(s)	179, 239, 475, 583, 584, 673
Bse118I	RCCGGY	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	698
BseDI	CCNNGG	6 cut(s)	130, 175, 267, 755, 756, 783
BseGI	GGATG	2 cut(s)	126, 682
BseLI	CCNNNNNNNGG	6 cut(s)	179, 239, 475, 583, 584, 673
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	43, 46
BseXI	GCAGC	1 cut(s)	801
BsgI	GTGCAG	1 cut(s)	734
Bsh1236I	CGCG	4 cut(s)	45, 148, 150, 177
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	3 cut(s)	135, 666, 701
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	755
BsiSI	CCGG	2 cut(s)	222, 756
BslI	CCNNNNNNNGG	6 cut(s)	179, 239, 475, 583, 584, 673
BsmAI	GTCTC	1 cut(s)	674
BsnI	GGCC	3 cut(s)	135, 666, 701
BsoBI	CYCGRG	1 cut(s)	755
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	528, 573, 580
BspANI	GGCC	3 cut(s)	135, 666, 701
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	4 cut(s)	45, 148, 150, 177
BspLI	GGNNCC	2 cut(s)	184, 479
BspMAI	CTGCAG	1 cut(s)	745
BspPI	GGATC	1 cut(s)	568
BspT104I	TTCGAA	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	6 cut(s)	130, 175, 267, 755, 756, 783
BssMI	GATC	3 cut(s)	528, 573, 580
BssNI	GRCGYC	1 cut(s)	627
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	2 cut(s)	401, 455
Bst6I	CTCTTC	1 cut(s)	611
BstACI	GRCGYC	1 cut(s)	627
BstAPI	GCANNNNNTGC	1 cut(s)	712
BstBAI	YACGTR	1 cut(s)	712
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	223, 227
BstDEI	CTNAG	2 cut(s)	309, 684
BstDSI	CCRYGG	2 cut(s)	130, 175
BstF5I	GGATG	2 cut(s)	126, 682
BstFNI	CGCG	4 cut(s)	45, 148, 150, 177
BstHHI	GCGC	2 cut(s)	47, 150
BstKTI	GATC	3 cut(s)	531, 576, 583
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	3 cut(s)	528, 573, 580
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 147, 161, 413, 712
BstNI	CCWGG	1 cut(s)	698
BstSCI	CCNGG	3 cut(s)	696, 754, 755
BstSFI	CTRYAG	2 cut(s)	375, 741
BstUI	CGCG	4 cut(s)	45, 148, 150, 177
BstV1I	GCAGC	1 cut(s)	801
BsuRI	GGCC	3 cut(s)	135, 666, 701
BtgI	CCRYGG	2 cut(s)	130, 175
BtsCI	GGATG	2 cut(s)	126, 682
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	223, 227
CfoI	GCGC	2 cut(s)	47, 150
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	478
Cfr42I	CCGCGG	1 cut(s)	178
Cfr9I	CCCGGG	1 cut(s)	755
CseI	GACGC	2 cut(s)	139, 616
Csp6I	GTAC	3 cut(s)	313, 709, 799
CviAII	CATG	2 cut(s)	474, 769
CviQI	GTAC	3 cut(s)	313, 709, 799
DdeI	CTNAG	2 cut(s)	309, 684
DpnI	GATC	3 cut(s)	530, 575, 582
DpnII	GATC	3 cut(s)	528, 573, 580
EaeI	YGGCCR	1 cut(s)	664
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
EciI	GGCGGA	2 cut(s)	128, 208
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	783
Eco147I	AGGCCT	1 cut(s)	701
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	421
Eco88I	CYCGRG	1 cut(s)	755
EcoICRI	GAGCTC	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	2 cut(s)	477, 772
FaiI	YATR	5 cut(s)	330, 475, 564, 770, 814
FatI	CATG	2 cut(s)	473, 768
FauI	CCCGC	3 cut(s)	50, 153, 182
Fnu4HI	GCNGC	6 cut(s)	6, 18, 81, 178, 181, 790
FokI	GGATG	2 cut(s)	113, 689
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	6 cut(s)	6, 18, 81, 178, 181, 790
GlaI	GCGC	2 cut(s)	46, 149
GluI	GCNGC	6 cut(s)	6, 18, 81, 178, 181, 790
GsuI	CTGGAG	1 cut(s)	680
HaeIII	GGCC	3 cut(s)	135, 666, 701
HapII	CCGG	2 cut(s)	222, 756
HgaI	GACGC	2 cut(s)	139, 616
HhaI	GCGC	2 cut(s)	47, 150
Hin1I	GRCGYC	1 cut(s)	627
Hin1II	CATG	2 cut(s)	477, 772
Hin6I	GCGC	2 cut(s)	45, 148
HinP1I	GCGC	2 cut(s)	45, 148
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	3 cut(s)	334, 588, 603
HpaII	CCGG	2 cut(s)	222, 756
HphI	GGTGA	3 cut(s)	376, 521, 532
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	3 cut(s)	242, 310, 535
Hpy188III	TCNNGA	2 cut(s)	254, 725
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	3 cut(s)	80, 155, 242
HpyAV	CCTTC	4 cut(s)	40, 94, 211, 617
HpyCH4III	ACNGT	2 cut(s)	401, 455
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	4 cut(s)	473, 706, 715, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 147, 161, 413, 712
HpyF3I	CTNAG	2 cut(s)	309, 684
HpySE526I	ACGT	1 cut(s)	711
Hsp92I	GRCGYC	1 cut(s)	627
Hsp92II	CATG	2 cut(s)	477, 772
HspAI	GCGC	2 cut(s)	45, 148
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	528, 573, 580
LmnI	GCTCC	4 cut(s)	188, 256, 418, 699
Lsp1109I	GCAGC	1 cut(s)	801
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	3 cut(s)	401, 509, 538
MalI	GATC	3 cut(s)	530, 575, 582
MboI	GATC	3 cut(s)	528, 573, 580
MboII	GAAGA	2 cut(s)	334, 598
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	2 cut(s)	287, 549
MlyI	GAGTC	1 cut(s)	597
MmeI	TCCRAC	1 cut(s)	220
MreI	CGCCGGCG	1 cut(s)	221
MroNI	GCCGGC	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	2 cut(s)	222, 756
MspR9I	CCNGG	3 cut(s)	698, 756, 757
MvaI	CCWGG	1 cut(s)	698
MvnI	CGCG	4 cut(s)	45, 148, 150, 177
MwoI	GCNNNNNNNGC	5 cut(s)	14, 147, 161, 413, 712
NaeI	GCCGGC	1 cut(s)	223
NciI	CCSGG	2 cut(s)	756, 757
NdeII	GATC	3 cut(s)	528, 573, 580
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	477, 772
NlaIV	GGNNCC	2 cut(s)	184, 479
NmeAIII	GCCGAG	2 cut(s)	292, 433
NmuCI	GTSAC	3 cut(s)	401, 509, 538
NspV	TTCGAA	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	701
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	334, 588
PkrI	GCNGC	6 cut(s)	7, 19, 82, 179, 182, 791
PleI	GAGTC	1 cut(s)	597
PpsI	GAGTC	1 cut(s)	597
Ppu21I	YACGTR	1 cut(s)	712
Psp124BI	GAGCTC	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	696
PspN4I	GGNNCC	2 cut(s)	184, 479
PspPI	GGNCC	1 cut(s)	478
PstI	CTGCAG	1 cut(s)	745
RsaI	GTAC	3 cut(s)	314, 710, 800
RsaNI	GTAC	3 cut(s)	313, 709, 799
SacI	GAGCTC	1 cut(s)	423
SacII	CCGCGG	1 cut(s)	178
SatI	GCNGC	6 cut(s)	6, 18, 81, 178, 181, 790
Sau3AI	GATC	3 cut(s)	528, 573, 580
Sau96I	GGNCC	1 cut(s)	478
SbfI	CCTGCAGG	1 cut(s)	745
ScaI	AGTACT	1 cut(s)	800
SchI	GAGTC	1 cut(s)	597
ScrFI	CCNGG	3 cut(s)	698, 756, 757
SdaI	CCTGCAGG	1 cut(s)	745
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	6 cut(s)	97, 231, 306, 423, 471, 714
SfcI	CTRYAG	2 cut(s)	375, 741
Sfr303I	CCGCGG	1 cut(s)	178
SfuI	TTCGAA	1 cut(s)	261
SgrAI	CRCCGGYG	1 cut(s)	221
SgrBI	CCGCGG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	478
SmaI	CCCGGG	1 cut(s)	757
Sse8387I	CCTGCAGG	1 cut(s)	745
Sse9I	AATT	2 cut(s)	287, 549
SseBI	AGGCCT	1 cut(s)	701
SstI	GAGCTC	1 cut(s)	423
StuI	AGGCCT	1 cut(s)	701
StyD4I	CCNGG	3 cut(s)	696, 754, 755
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	2 cut(s)	401, 455
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	2 cut(s)	261, 279
TasI	AATT	2 cut(s)	287, 549
TatI	WGTACW	2 cut(s)	312, 798
TauI	GCSGC	4 cut(s)	20, 83, 180, 183
TfiI	GAWTC	2 cut(s)	334, 588
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	3 cut(s)	401, 509, 538
TseI	GCWGC	2 cut(s)	5, 789
Tsp45I	GTSAC	3 cut(s)	401, 509, 538
TspDTI	ATGAA	4 cut(s)	193, 598, 744, 785
TspMI	CCCGGG	1 cut(s)	755
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	287
XmaI	CCCGGG	1 cut(s)	755
ZrmI	AGTACT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.