AT5G06290

2-Cys peroxiredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010282
Physical Location & Seq
Forward (+)
1919080 .. 1921425
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06290.1

Sequence Viewer

Length: 822 bp
ATGTCAATGGCGTCTATAGCTTCTTCTTCTTCCACCACCCTACTCTCTTCCTCTAGGGTTCTTCTTCCCTCCAAGTCTTCTCTTTTATCTCCTACCGTCTCTTTCCCCAGAATCATACCCTCTTCCTCGGCATCATCCTCTTCTCTCTGTTCCGGGTTCTCCAGTCTCGGTTCCCTCACCACCAACCGCTCCGCCTCACGCCGGAACTTCGCCGTCAAGGCTCAGGCTGATGATTTACCACTGGTCGGTAATAAGGCGCCTGATTTTGAAGCTGAGGCAGTTTTTGATCAAGAGTTCATAAAGGTGAAGCTCTCTGAGTACATTGGCAAAAAGTATGTTATTCTATTCTTCTACCCTTTGGACTTCACTTTTGTCTGCCCCACTGAGATTACTGCCTTCAGTGACCGTTATGAAGAATTTGAGAAGCTAAACACCGAAGTATTAGGGGTCTCTGTCGACAGTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCGGGAGGGCTCGGTGATCTGAATTATCCTCTTGTTTCGGATATCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCACTGAGAGGGCTTTTCATCATAGACAAGGAAGGAGTCATTCAGCATTCCACCATCAACAACCTCGGTATTGGCCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTATGTTCAAGAAAACCCGGATGAAGTGTGCCCTGCGGGATGGAAGCCAGGGGAGAAATCAATGAAACCTGACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAG

Protein Analysis

273

Amino Acids

29.78

Weight (kDa)

5.55

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA PF00578 82 - 215 4.8e-42 AhpC/TSA family
Redoxin PF08534 82 - 218 1e-15 Redoxin
1-cysPrx_C PF10417 236 - 271 1.8e-11 C-terminal domain of 1-Cys peroxiredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11630 AT5G06290 AT5G06290
fragaria_vesca FvH4_6g20020 FvH4_6g20020
malus_domestica MD12G1037300.v1.1 MD14G1036400.v1.1
prunus_persica Prupe.7G097900_v2.0.a1
pyrus_communis pycom12g03230 pycom14g03190
rosa_chinensis RchiOBHm_Chr3g0475471
rosa_laevigata RLG00000023842
rosa_multiflora Rmu_sc0015717.1_g000003 Rmu_sc0016637.1_g000010
rosa_roxburghii Rroxscaffold_6G00406290
rosa_rugosa Rorug03G0149000
rosa_samantha Rh3AG199300 Rh3BG229100 Rh3CG223500 Rh3DG224400
rosa_wichuraiana Rw3G018070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 256
AccBSI CCGCTC 1 cut(s) 189
AccI GTMKAC 1 cut(s) 456
AciI CCGC 3 cut(s) 187, 192, 749
AcoI YGGCCR 1 cut(s) 670
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 382
AcyI GRCGYC 2 cut(s) 11, 257
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 4 cut(s) 201, 245, 589, 590
AgsI TTSAA 3 cut(s) 269, 561, 722
AhdI GACNNNNNGTC 1 cut(s) 499
AjnI CCWGG 2 cut(s) 702, 760
AluBI AGCT 6 cut(s) 20, 272, 310, 427, 793, 815
AluI AGCT 6 cut(s) 20, 272, 310, 427, 793, 815
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 4 cut(s) 103, 170, 454, 680
AoxI GGCC 1 cut(s) 670
ApoI RAATTY 1 cut(s) 416
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 484
AsuC2I CCSGG 2 cut(s) 154, 731
AsuHPI GGTGA 3 cut(s) 169, 316, 527
AvaII GGWCC 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 579
BbvCI CCTCAGC 1 cut(s) 273
BccI CCATC 2 cut(s) 659, 747
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 704, 762
BclI TGATCA 2 cut(s) 286, 586
BcnI CCSGG 2 cut(s) 154, 731
BcoDI GTCTC 4 cut(s) 103, 170, 454, 680
BfaI CTAG 2 cut(s) 54, 820
BfmI CTRYAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 260
BglI GCCNNNNNGGC 1 cut(s) 218
BlpI GCTNAGC 1 cut(s) 794
Bme1390I CCNGG 4 cut(s) 154, 704, 731, 762
Bme18I GGWCC 1 cut(s) 484
BmeRI GACNNNNNGTC 1 cut(s) 499
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 3 cut(s) 172, 258, 485
BmrFI CCNGG 4 cut(s) 154, 704, 731, 762
BmsI GCATC 2 cut(s) 140, 481
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 2 cut(s) 145, 686
Bpu10I CCTNAGC 2 cut(s) 222, 273
Bpu1102I GCTNAGC 1 cut(s) 794
BpuMI CCSGG 2 cut(s) 154, 731
BsaHI GRCGYC 2 cut(s) 11, 257
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 3 cut(s) 126, 661, 761
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 245, 589, 590
Bse1I ACTGG 2 cut(s) 162, 246
Bse3DI GCAATG 1 cut(s) 594
BseBI CCWGG 2 cut(s) 704, 762
BseDI CCNNGG 3 cut(s) 126, 661, 761
BseGI GGATG 4 cut(s) 134, 579, 739, 758
BseLI CCNNNNNNNGG 4 cut(s) 201, 245, 589, 590
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 6 cut(s) 236, 264, 306, 375, 593, 808
BseNI ACTGG 2 cut(s) 162, 246
BseSI GKGCMC 1 cut(s) 746
BshFI GGCC 1 cut(s) 672
BshNI GGYRCC 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 579
BsiSI CCGG 3 cut(s) 153, 202, 731
BslI CCNNNNNNNGG 4 cut(s) 201, 245, 589, 590
BsmAI GTCTC 4 cut(s) 103, 170, 454, 680
BsmBI CGTCTC 1 cut(s) 103
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 1 cut(s) 672
Bso31I GGTCTC 1 cut(s) 454
Bsp1286I GDGCHC 3 cut(s) 513, 579, 746
Bsp143I GATC 3 cut(s) 286, 517, 586
Bsp1720I GCTNAGC 1 cut(s) 794
BspACI CCGC 3 cut(s) 187, 192, 749
BspANI GGCC 1 cut(s) 672
BspCNI CTCAG 6 cut(s) 235, 265, 307, 376, 594, 807
BspLI GGNNCC 3 cut(s) 172, 258, 485
BspT107I GGYRCC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 454
BsrBI CCGCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 594
BsrI ACTGG 2 cut(s) 162, 246
BssECI CCNNGG 3 cut(s) 126, 661, 761
BssMI GATC 3 cut(s) 286, 517, 586
BssNI GRCGYC 2 cut(s) 11, 257
Bst2UI CCWGG 2 cut(s) 704, 762
Bst4CI ACNGT 4 cut(s) 97, 407, 461, 714
Bst6I CTCTTC 3 cut(s) 52, 127, 145
BstACI GRCGYC 2 cut(s) 11, 257
BstDEI CTNAG 6 cut(s) 222, 273, 315, 384, 602, 794
BstF5I GGATG 4 cut(s) 134, 579, 739, 758
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 3 cut(s) 289, 520, 589
BstMAI GTCTC 4 cut(s) 103, 170, 454, 680
BstMBI GATC 3 cut(s) 286, 517, 586
BstMWI GCNNNNNNNGC 2 cut(s) 17, 218
BstNI CCWGG 2 cut(s) 704, 762
BstSCI CCNGG 4 cut(s) 152, 702, 729, 760
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 746
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 672
BtsCI GGATG 4 cut(s) 134, 579, 739, 758
BtsIMutI CAGTG 5 cut(s) 239, 381, 406, 466, 599
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 484
Csp6I GTAC 1 cut(s) 319
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 6 cut(s) 222, 273, 315, 384, 602, 794
DinI GGCGCC 1 cut(s) 258
DpnI GATC 3 cut(s) 288, 519, 588
DpnII GATC 3 cut(s) 286, 517, 586
DriI GACNNNNNGTC 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 670
Eam1104I CTCTTC 3 cut(s) 52, 127, 145
Eam1105I GACNNNNNGTC 1 cut(s) 499
EarI CTCTTC 3 cut(s) 52, 127, 145
EciI GGCGGA 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 513
Eco31I GGTCTC 1 cut(s) 454
Eco32I GATATC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 702, 760
EcoRV GATATC 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 513
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 103
FaiI YATR 7 cut(s) 17, 116, 299, 336, 411, 620, 717
FauI CCCGC 1 cut(s) 742
FbaI TGATCA 2 cut(s) 286, 586
FblI GTMKAC 1 cut(s) 456
FokI GGATG 4 cut(s) 121, 566, 746, 765
FriOI GRGCYC 1 cut(s) 513
FspBI CTAG 2 cut(s) 54, 820
GlaI GCGC 1 cut(s) 258
GsuI CTGGAG 2 cut(s) 145, 686
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 672
HapII CCGG 3 cut(s) 153, 202, 731
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 2 cut(s) 11, 257
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 2 cut(s) 111, 633
HpaII CCGG 3 cut(s) 153, 202, 731
HphI GGTGA 3 cut(s) 169, 316, 527
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 3 cut(s) 316, 522, 541
Hpy188III TCNNGA 3 cut(s) 290, 504, 722
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 2 cut(s) 406, 623
HpyCH4III ACNGT 4 cut(s) 97, 407, 461, 714
HpyCH4V TGCA 1 cut(s) 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 218
HpyF3I CTNAG 6 cut(s) 222, 273, 315, 384, 602, 794
Hsp92I GRCGYC 2 cut(s) 11, 257
HspAI GCGC 1 cut(s) 257
KasI GGCGCC 1 cut(s) 256
Ksp22I TGATCA 2 cut(s) 286, 586
Kzo9I GATC 3 cut(s) 286, 517, 586
LmnI GCTCC 1 cut(s) 194
LweI GCATC 2 cut(s) 140, 481
MaeI CTAG 2 cut(s) 54, 820
MaeIII GTNAC 1 cut(s) 401
MalI GATC 3 cut(s) 288, 519, 588
MbiI CCGCTC 1 cut(s) 189
MboI GATC 3 cut(s) 286, 517, 586
MhlI GDGCHC 3 cut(s) 513, 579, 746
MluCI AATT 2 cut(s) 416, 523
Mly113I GGCGCC 1 cut(s) 257
MlyI GAGTC 1 cut(s) 642
MslI CAYNNNNRTG 1 cut(s) 302
MspI CCGG 3 cut(s) 153, 202, 731
MspR9I CCNGG 4 cut(s) 154, 704, 731, 762
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 2 cut(s) 704, 762
MwoI GCNNNNNNNGC 2 cut(s) 17, 218
NarI GGCGCC 1 cut(s) 257
NciI CCSGG 2 cut(s) 154, 731
NdeII GATC 3 cut(s) 286, 517, 586
NlaIV GGNNCC 3 cut(s) 172, 258, 485
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 401
PcsI WCGNNNNNNNCGW 1 cut(s) 476
PctI GAATGC 1 cut(s) 643
PfeI GAWTC 1 cut(s) 111
PleI GAGTC 1 cut(s) 641
PluTI GGCGCC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 641
Psp6I CCWGG 2 cut(s) 702, 760
PspGI CCWGG 2 cut(s) 702, 760
PspN4I GGNNCC 3 cut(s) 172, 258, 485
PspPI GGNCC 1 cut(s) 484
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 302
SalI GTCGAC 1 cut(s) 455
Sau3AI GATC 3 cut(s) 286, 517, 586
Sau96I GGNCC 1 cut(s) 484
SchI GAGTC 1 cut(s) 642
ScrFI CCNGG 4 cut(s) 154, 704, 731, 762
SduI GDGCHC 3 cut(s) 513, 579, 746
SetI ASST 9 cut(s) 22, 274, 306, 312, 429, 663, 784, 795, 817
SfaNI GCATC 2 cut(s) 140, 481
SfcI CTRYAG 1 cut(s) 15
SfoI GGCGCC 1 cut(s) 258
SinI GGWCC 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 2 cut(s) 416, 523
SsiI CCGC 3 cut(s) 187, 192, 749
SspDI GGCGCC 1 cut(s) 256
SspMI CTAG 2 cut(s) 54, 820
StyD4I CCNGG 4 cut(s) 152, 702, 729, 760
TaaI ACNGT 4 cut(s) 97, 407, 461, 714
TaqI TCGA 1 cut(s) 456
TasI AATT 2 cut(s) 416, 523
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 1 cut(s) 111
TscAI CASTG 5 cut(s) 246, 388, 406, 466, 606
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 5 cut(s) 286, 426, 604, 750, 791
TspRI CASTG 5 cut(s) 246, 388, 406, 466, 606
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 456
XspI CTAG 2 cut(s) 54, 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.