Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0010282

Physical Location & Seq

Genomic Coordinates Forward (+)

20826947 .. 20829309

Gene Structure 2363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG223500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCGCCTCAACCGCTCTCATCTCCTCCACCCCTAGGGCTTTCGCCTCCGCCAAATCCTCATCTCTCGCCGCCTCTTCCATCTCCAAGCCCCAACCCCAAACCCTAACATTCCCCAAATCCTTCACCGGCCTCCGCCTCCCATCCCCCTCCCGCTCCATCTCTCTCTCCCGCGCCTCCCATCCCGCCAAGTCCTTCGCCGTCAAAGCTTCCGCTGAGCTTCCGTTGGTCGGAAACGTTGCGCCGGATTTTGAAGCTGAGGCTGTTTTTGACCAGGAATTCATCAAGGTCAAATTGTCTGAATACTTTGGGAAGAAATATGTGATTCTGTTTTTCTATCCGTTGGATTTCACATTTGTTTGCCCAACAGAGATTACTGCTTTCAGTGACCGTCATGCTGAATTCGAGGCACTCAACACAGAAGTCTTGGGTGTTTCAGTCGACAGTGTTTTTTCGCATCTTGCATGGGTCCAAACAGATAGGAAATCAGGCGGTCTTGGTGACTTGAAGTATCCATTGGTCTCTGATGTCACCAAATCAATTTCAAAATCTTATGGTGTACTGATCCCAGACCAGGGAATTGCATTGAGGGGACTCTTCATTATTGACAAGGAAGGTGTTATTCAACACTCCACCATTAACAATCTTGCCATCGGCCGAAGTGTGGATGAGACTAAGAGAACGCTCCAGGCCTTGCAGTTTGTGCAGGACAACCCTGATGAGGTTTGCCCGGCTGGGTGGAAGCCTGGGGAGAAGTCCATGAAGCCAGACCCCAAGCTCAGCAAAGAGTACTTCTCTGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010319 GO:0016209 GO:0016491 GO:0016684 GO:0031967 GO:0031975 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0051920 GO:0055114 GO:0070887 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

268

Amino Acids

29.14

Weight (kDa)

7.73

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	77 - 210	5.7e-41	AhpC/TSA family
Redoxin	PF08534	77 - 214	1.2e-14	Redoxin
1-cysPrx_C	PF10417	231 - 266	6.7e-11	C-terminal domain of 1-Cys peroxiredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11630 AT5G06290 AT5G06290
fragaria_vesca	FvH4_6g20020 FvH4_6g20020
malus_domestica	MD12G1037300.v1.1 MD14G1036400.v1.1
prunus_persica	Prupe.7G097900_v2.0.a1
pyrus_communis	pycom12g03230 pycom14g03190
rosa_chinensis	RchiOBHm_Chr3g0475471
rosa_laevigata	RLG00000023842
rosa_multiflora	Rmu_sc0015717.1_g000003 Rmu_sc0016637.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406290
rosa_rugosa	Rorug03G0149000
rosa_samantha	Rh3AG199300 Rh3BG229100 Rh3CG223500 Rh3DG224400
rosa_wichuraiana	Rw3G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	17, 156
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	174
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	1 cut(s)	559
AcoI	YGGCCR	2 cut(s)	3, 655
AcsI	RAATTY	2 cut(s)	278, 401
AfaI	GTAC	2 cut(s)	561, 791
AfiI	CCNNNNNNNGG	6 cut(s)	36, 230, 574, 575, 664, 721
AgsI	TTSAA	4 cut(s)	254, 508, 546, 626
AjnI	CCWGG	4 cut(s)	273, 573, 687, 745
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	4 cut(s)	209, 220, 257, 778
AluI	AGCT	4 cut(s)	209, 220, 257, 778
Alw26I	GTCTC	2 cut(s)	526, 665
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	4 cut(s)	3, 130, 655, 690
ApoI	RAATTY	2 cut(s)	278, 401
AspA2I	CCTAGG	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	176, 244
AspS9I	GGNCC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	3 cut(s)	118, 512, 523
AvaII	GGWCC	1 cut(s)	469
AvrII	CCTAGG	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	258
BccI	CCATC	5 cut(s)	89, 151, 167, 189, 659
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	4 cut(s)	275, 575, 689, 747
BciVI	GTATCC	1 cut(s)	522
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	2 cut(s)	526, 665
BfaI	CTAG	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	522
BisI	GCNGC	2 cut(s)	6, 72
BlnI	CCTAGG	1 cut(s)	35
BlpI	GCTNAGC	2 cut(s)	216, 779
BlsI	GCNGC	2 cut(s)	7, 73
BmcAI	AGTACT	1 cut(s)	791
Bme1390I	CCNGG	5 cut(s)	275, 575, 689, 731, 747
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	470
BmrFI	CCNGG	5 cut(s)	275, 575, 689, 731, 747
BmsI	GCATC	1 cut(s)	466
BplI	GAGNNNNNCTC	1 cut(s)	779
BpmI	CTGGAG	1 cut(s)	671
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu1102I	GCTNAGC	2 cut(s)	216, 779
BpuMI	CCSGG	1 cut(s)	731
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	35, 574, 746
Bsc4I	CCNNNNNNNGG	6 cut(s)	36, 230, 574, 575, 664, 721
Bse118I	RCCGGY	1 cut(s)	128
BseBI	CCWGG	4 cut(s)	275, 575, 689, 747
BseDI	CCNNGG	3 cut(s)	35, 574, 746
BseGI	GGATG	3 cut(s)	143, 181, 673
BseLI	CCNNNNNNNGG	6 cut(s)	36, 230, 574, 575, 664, 721
BseMII	CTCAG	3 cut(s)	207, 249, 793
BseRI	GAGGAG	1 cut(s)	16
BseX3I	CGGCCG	1 cut(s)	655
BseYI	CCCAGC	1 cut(s)	734
BsgI	GTGCAG	1 cut(s)	725
Bsh1236I	CGCG	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	4 cut(s)	5, 132, 657, 692
BsiEI	CGRYCG	1 cut(s)	658
BsiSI	CCGG	3 cut(s)	129, 245, 731
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	6 cut(s)	36, 230, 574, 575, 664, 721
BsmAI	GTCTC	2 cut(s)	526, 665
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	4 cut(s)	5, 132, 657, 692
Bso31I	GGTCTC	1 cut(s)	526
Bsp143I	GATC	1 cut(s)	564
Bsp1720I	GCTNAGC	2 cut(s)	216, 779
BspANI	GGCC	4 cut(s)	5, 132, 657, 692
BspCNI	CTCAG	3 cut(s)	208, 250, 792
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	526
BsrBI	CCGCTC	2 cut(s)	17, 156
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	35, 574, 746
BssMI	GATC	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	4 cut(s)	275, 575, 689, 747
Bst4CI	ACNGT	2 cut(s)	392, 446
Bst6I	CTCTTC	2 cut(s)	82, 602
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstDEI	CTNAG	4 cut(s)	216, 258, 675, 779
BstF5I	GGATG	3 cut(s)	143, 181, 673
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	176, 244
BstKTI	GATC	1 cut(s)	567
BstMAI	GTCTC	2 cut(s)	526, 665
BstMBI	GATC	1 cut(s)	564
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 206, 703
BstNI	CCWGG	4 cut(s)	275, 575, 689, 747
BstSCI	CCNGG	5 cut(s)	273, 573, 687, 729, 745
BstUI	CGCG	1 cut(s)	174
BstZI	CGGCCG	1 cut(s)	655
BsuI	GTATCC	1 cut(s)	522
BsuRI	GGCC	4 cut(s)	5, 132, 657, 692
BtsCI	GGATG	3 cut(s)	143, 181, 673
BtsIMutI	CAGTG	2 cut(s)	391, 451
CfoI	GCGC	2 cut(s)	176, 244
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	560, 790
CviAII	CATG	3 cut(s)	395, 465, 760
CviQI	GTAC	2 cut(s)	560, 790
DdeI	CTNAG	4 cut(s)	216, 258, 675, 779
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
EaeI	YGGCCR	2 cut(s)	3, 655
EagI	CGGCCG	1 cut(s)	655
Eam1104I	CTCTTC	2 cut(s)	82, 602
EarI	CTCTTC	2 cut(s)	82, 602
EciI	GGCGGA	2 cut(s)	40, 125
EclXI	CGGCCG	1 cut(s)	655
Eco130I	CCWWGG	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	692
Eco31I	GGTCTC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	469
Eco52I	CGGCCG	1 cut(s)	655
EcoRI	GAATTC	2 cut(s)	278, 401
EcoRII	CCWGG	4 cut(s)	273, 573, 687, 745
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	3 cut(s)	398, 468, 763
FaiI	YATR	6 cut(s)	321, 396, 466, 555, 761, 805
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	3 cut(s)	394, 464, 759
FauI	CCCGC	3 cut(s)	161, 179, 193
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	6, 72
FokI	GGATG	3 cut(s)	130, 168, 680
Fsp4HI	GCNGC	2 cut(s)	6, 72
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	2 cut(s)	175, 243
GluI	GCNGC	2 cut(s)	6, 72
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	1 cut(s)	671
HaeIII	GGCC	4 cut(s)	5, 132, 657, 692
HapII	CCGG	3 cut(s)	129, 245, 731
HhaI	GCGC	2 cut(s)	176, 244
Hin1II	CATG	3 cut(s)	398, 468, 763
Hin6I	GCGC	2 cut(s)	174, 242
HinP1I	GCGC	2 cut(s)	174, 242
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	2 cut(s)	325, 594
HpaII	CCGG	3 cut(s)	129, 245, 731
HphI	GGTGA	3 cut(s)	118, 512, 523
Hpy166II	GTNNAC	2 cut(s)	442, 560
Hpy188I	TCNGA	3 cut(s)	233, 301, 526
Hpy8I	GTNNAC	2 cut(s)	442, 560
HpyAV	CCTTC	3 cut(s)	133, 205, 608
HpyCH4III	ACNGT	2 cut(s)	392, 446
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	5 cut(s)	464, 584, 697, 706, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 206, 703
HpyF3I	CTNAG	4 cut(s)	216, 258, 675, 779
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	398, 468, 763
HspAI	GCGC	2 cut(s)	174, 242
Kzo9I	GATC	1 cut(s)	564
LmnI	GCTCC	2 cut(s)	161, 690
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	3 cut(s)	386, 500, 529
MalI	GATC	1 cut(s)	566
MbiI	CCGCTC	2 cut(s)	17, 156
MboI	GATC	1 cut(s)	564
MboII	GAAGA	3 cut(s)	69, 325, 589
MluCI	AATT	5 cut(s)	278, 293, 401, 540, 579
MlyI	GAGTC	1 cut(s)	588
MmeI	TCCRAC	2 cut(s)	211, 324
MseI	TTAA	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	3 cut(s)	129, 245, 731
MspR9I	CCNGG	5 cut(s)	275, 575, 689, 731, 747
MvaI	CCWGG	4 cut(s)	275, 575, 689, 747
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	14, 206, 703
NciI	CCSGG	1 cut(s)	731
NdeII	GATC	1 cut(s)	564
NlaIII	CATG	3 cut(s)	398, 468, 763
NlaIV	GGNNCC	1 cut(s)	470
NmuCI	GTSAC	3 cut(s)	386, 500, 529
PceI	AGGCCT	1 cut(s)	692
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	7, 73
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	4 cut(s)	273, 573, 687, 745
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	4 cut(s)	273, 573, 687, 745
PspN4I	GGNNCC	1 cut(s)	470
PspPI	GGNCC	1 cut(s)	469
RsaI	GTAC	2 cut(s)	561, 791
RsaNI	GTAC	2 cut(s)	560, 790
SalI	GTCGAC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	2 cut(s)	6, 72
Sau3AI	GATC	1 cut(s)	564
Sau96I	GGNCC	1 cut(s)	469
ScaI	AGTACT	1 cut(s)	791
SchI	GAGTC	1 cut(s)	588
ScrFI	CCNGG	5 cut(s)	275, 575, 689, 731, 747
SetI	ASST	8 cut(s)	211, 222, 240, 259, 291, 619, 726, 780
SfaNI	GCATC	1 cut(s)	466
SinI	GGWCC	1 cut(s)	469
Sse9I	AATT	5 cut(s)	278, 293, 401, 540, 579
SseBI	AGGCCT	1 cut(s)	692
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	692
StyD4I	CCNGG	5 cut(s)	273, 573, 687, 729, 745
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	392, 446
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	405, 441
TasI	AATT	5 cut(s)	278, 293, 401, 540, 579
TatI	WGTACW	2 cut(s)	559, 789
TauI	GCSGC	2 cut(s)	8, 74
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	2 cut(s)	391, 451
TseFI	GTSAC	3 cut(s)	386, 500, 529
Tsp45I	GTSAC	3 cut(s)	386, 500, 529
TspDTI	ATGAA	3 cut(s)	271, 589, 776
TspGWI	ACGGA	2 cut(s)	213, 330
TspRI	CASTG	2 cut(s)	391, 451
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	278, 401
XmaJI	CCTAGG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.