Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010282

Physical Location & Seq

Genomic Coordinates Forward (+)

21066080 .. 21068822

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG224400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCCGCCTCAACCGCTCTCATCTCCTCCACCCCTAGGGCTTTCGCCTCCGCCAAATCCTCATCTCTCGCCGCCTCTTCCATCTCCAAGCCCCAATCCCAAACCCTAACATTCCCCAAATCCTTCACCGGCCTCCGCCTCCCATCCCCCTCCCGCTCCATCTCCCTCTCCCGCGGCTCCCATTCCGCCAAGTCCTTCGCCGTCAAAGCTTCCGCTGAGCTTCCGTTGGTCGGAAACGTTGCGCCGGATTTTGAAGCTGAGGCTGTTTTTGACCAGGAATTCATCAAGGTCAAATTGTCTGAATACATTGGGAAGAAATATGTGATTCTGTTTTTCTATCCGTTGGATTTCACATTTGTTTGCCCAACAGAGATTACTGCTTTCAGTGACCGTCATGCTGAGTTCGAGGCACTCAACACAGAAGTCTTGGGTGTTTCAGTCGACAGTGTTTTTTCGCATCTTGCATGGGTCCAAACAGATAGGAAATCAGGCGGTCTTGGTGACTTGAAGTATCCATTGGTCTCTGATGTCACCAAATCAATTTCAAAATCTTATGGTGTACTGATCCCAGACCAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010319 GO:0016209 GO:0016491 GO:0016684 GO:0031967 GO:0031975 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0051920 GO:0055114 GO:0070887 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

193

Amino Acids

20.78

Weight (kDa)

7.82

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	77 - 191	4.2e-33	AhpC/TSA family
Redoxin	PF08534	77 - 189	3.2e-09	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11630 AT5G06290 AT5G06290
fragaria_vesca	FvH4_6g20020 FvH4_6g20020
malus_domestica	MD12G1037300.v1.1 MD14G1036400.v1.1
prunus_persica	Prupe.7G097900_v2.0.a1
pyrus_communis	pycom12g03230 pycom14g03190
rosa_chinensis	RchiOBHm_Chr3g0475471
rosa_laevigata	RLG00000023842
rosa_multiflora	Rmu_sc0015717.1_g000003 Rmu_sc0016637.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406290
rosa_rugosa	Rorug03G0149000
rosa_samantha	Rh3AG199300 Rh3BG229100 Rh3CG223500 Rh3DG224400
rosa_wichuraiana	Rw3G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	17, 156
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	174
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	1 cut(s)	559
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	3 cut(s)	36, 230, 574
AgsI	TTSAA	3 cut(s)	254, 508, 546
AjnI	CCWGG	2 cut(s)	273, 573
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	3 cut(s)	209, 220, 257
AluI	AGCT	3 cut(s)	209, 220, 257
Alw26I	GTCTC	1 cut(s)	526
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	2 cut(s)	3, 130
ApoI	RAATTY	1 cut(s)	278
AspA2I	CCTAGG	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	3 cut(s)	118, 512, 523
AvaII	GGWCC	1 cut(s)	469
AvrII	CCTAGG	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	258
BccI	CCATC	3 cut(s)	89, 151, 167
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	275, 575
BciVI	GTATCC	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	526
BfaI	CTAG	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	522
BisI	GCNGC	3 cut(s)	6, 72, 175
BlnI	CCTAGG	1 cut(s)	35
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	3 cut(s)	7, 73, 176
Bme1390I	CCNGG	2 cut(s)	275, 575
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	2 cut(s)	178, 470
BmrFI	CCNGG	2 cut(s)	275, 575
BmsI	GCATC	1 cut(s)	466
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	2 cut(s)	35, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 230, 574
Bse118I	RCCGGY	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	275, 575
BseDI	CCNNGG	2 cut(s)	35, 172
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	3 cut(s)	36, 230, 574
BseMII	CTCAG	3 cut(s)	207, 249, 390
BseRI	GAGGAG	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	5, 132
BsiSI	CCGG	2 cut(s)	129, 245
BslI	CCNNNNNNNGG	3 cut(s)	36, 230, 574
BsmAI	GTCTC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	5, 132
Bso31I	GGTCTC	1 cut(s)	526
Bsp143I	GATC	1 cut(s)	564
Bsp1720I	GCTNAGC	1 cut(s)	216
BspANI	GGCC	2 cut(s)	5, 132
BspCNI	CTCAG	3 cut(s)	208, 250, 391
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	178, 470
BspPI	GGATC	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	526
BsrBI	CCGCTC	2 cut(s)	17, 156
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	35, 172
BssMI	GATC	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	275, 575
Bst4CI	ACNGT	2 cut(s)	392, 446
Bst6I	CTCTTC	1 cut(s)	82
BstDEI	CTNAG	3 cut(s)	216, 258, 399
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	143
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	567
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	1 cut(s)	564
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 206
BstNI	CCWGG	2 cut(s)	275, 575
BstSCI	CCNGG	2 cut(s)	273, 573
BstUI	CGCG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	5, 132
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	391, 451
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	469
Cfr42I	CCGCGG	1 cut(s)	175
CsiI	ACCWGGT	1 cut(s)	573
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	2 cut(s)	395, 465
CviJI	RGCY	9 cut(s)	5, 41, 91, 132, 177, 209, 220, 257, 263
CviKI_1	RGCY	9 cut(s)	5, 41, 91, 132, 177, 209, 220, 257, 263
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	3 cut(s)	216, 258, 399
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	3 cut(s)	40, 125, 175
Eco130I	CCWWGG	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	469
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	273, 573
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	2 cut(s)	398, 468
FaiI	YATR	5 cut(s)	321, 396, 466, 555, 580
FatI	CATG	2 cut(s)	394, 464
FauI	CCCGC	2 cut(s)	161, 179
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	6, 72, 175
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	3 cut(s)	6, 72, 175
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	3 cut(s)	6, 72, 175
HaeIII	GGCC	2 cut(s)	5, 132
HapII	CCGG	2 cut(s)	129, 245
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	398, 468
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	2 cut(s)	129, 245
HphI	GGTGA	3 cut(s)	118, 512, 523
Hpy166II	GTNNAC	2 cut(s)	442, 560
Hpy188I	TCNGA	3 cut(s)	233, 301, 526
Hpy8I	GTNNAC	2 cut(s)	442, 560
HpyAV	CCTTC	2 cut(s)	133, 205
HpyCH4III	ACNGT	2 cut(s)	392, 446
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 206
HpyF3I	CTNAG	3 cut(s)	216, 258, 399
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	398, 468
HspAI	GCGC	1 cut(s)	242
KspI	CCGCGG	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	564
LmnI	GCTCC	2 cut(s)	161, 182
LpnPI	CCDG	6 cut(s)	142, 258, 260, 287, 474, 560
LweI	GCATC	1 cut(s)	466
MabI	ACCWGGT	1 cut(s)	573
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	3 cut(s)	386, 500, 529
MalI	GATC	1 cut(s)	566
MbiI	CCGCTC	2 cut(s)	17, 156
MboI	GATC	1 cut(s)	564
MboII	GAAGA	2 cut(s)	69, 325
MluCI	AATT	3 cut(s)	278, 293, 540
MmeI	TCCRAC	2 cut(s)	211, 324
MspA1I	CMGCKG	2 cut(s)	174, 215
MspI	CCGG	2 cut(s)	129, 245
MspR9I	CCNGG	2 cut(s)	275, 575
MvaI	CCWGG	2 cut(s)	275, 575
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	14, 206
NdeII	GATC	1 cut(s)	564
NlaIII	CATG	2 cut(s)	398, 468
NlaIV	GGNNCC	2 cut(s)	178, 470
NmuCI	GTSAC	3 cut(s)	386, 500, 529
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	7, 73, 176
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	273, 573
PspGI	CCWGG	2 cut(s)	273, 573
PspN4I	GGNNCC	2 cut(s)	178, 470
PspPI	GGNCC	1 cut(s)	469
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
SacII	CCGCGG	1 cut(s)	175
SalI	GTCGAC	1 cut(s)	440
SatI	GCNGC	3 cut(s)	6, 72, 175
Sau3AI	GATC	1 cut(s)	564
Sau96I	GGNCC	1 cut(s)	469
ScrFI	CCNGG	2 cut(s)	275, 575
SetI	ASST	6 cut(s)	211, 222, 240, 259, 291, 579
SexAI	ACCWGGT	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	466
Sfr303I	CCGCGG	1 cut(s)	175
SgrBI	CCGCGG	1 cut(s)	175
SinI	GGWCC	1 cut(s)	469
Sse9I	AATT	3 cut(s)	278, 293, 540
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	273, 573
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	392, 446
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	405, 441
TasI	AATT	3 cut(s)	278, 293, 540
TatI	WGTACW	1 cut(s)	559
TauI	GCSGC	3 cut(s)	8, 74, 177
TfiI	GAWTC	1 cut(s)	325
TscAI	CASTG	2 cut(s)	391, 451
TseFI	GTSAC	3 cut(s)	386, 500, 529
Tsp45I	GTSAC	3 cut(s)	386, 500, 529
TspDTI	ATGAA	1 cut(s)	271
TspGWI	ACGGA	2 cut(s)	213, 330
TspRI	CASTG	2 cut(s)	391, 451
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	278
XmaJI	CCTAGG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.