Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010282

Physical Location & Seq

Genomic Coordinates Forward (+)

13450169 .. 13453016

Gene Structure 2848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20020.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTGCCTCCACTGCTCTCATCTCCTCCACCCCTAGGGCTTTCTCCAAATCCACCTCCCTCGCTGCTTCTTCCTTCTCCAAGCCCCAATCCCAAACCCTAACTTTCCCCAAATCCTTCACCGGCCTCCGCCTCCCCTGCGCCTCCCGCTCCCTCTCCCGCGGCTCACATTCCGCCAAGAGCTTCGCCGTCAAAGCTTCTGCGGAGCTTCCGTTGGTCGGAAACGTCGCGCCGGATTTCGAGGCCGAGGCTGTTTTTGACCAGGAATTCATCAACGTGTGGAATCTAATCGAAATTGTCAAGCTGTCCGACTACATTGGGAAGAAATATGTGATTCTGTTTTTCTATCCATTGGATTTCACATTTGTTTGCCCCACAGAGATTACTGCTTTCAGCGATCGTCATGGTGAGTTTGAGGCACTCAACACAGAAGTATTGGGTGTTTCAGTCGACAGTGTGTTTTCACATCTTGCATGGGTCCAAACAGATAGGAAATCAGGCGGTCTTGGTGACTTGAAGTATCCATTGGTCTCTGATGTCACCAAATCAATTTCAAAATCTTATGGTGTTCTGATCCCAGACCAGGGAATTGCATTGAGAGGACTCTTCATTATTGACAAGGAAGGTGTTATCCAACACTCCACCATTAACAATCTTGCCATCGGACGAAGTGTGGATGAGACCAAGAGAACGCTGCAGGCCTTGCAGTTTGTGCAGGACAACCCTGATGAGGTTTGCCCTGCTGGGTGGAAGCCTGGGGAGAAGTCAATGAAGCCAGACCCCAAGCTCAGCAAAGAGTACTTCTCTGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010319 GO:0016209 GO:0016491 GO:0016684 GO:0031967 GO:0031975 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0051920 GO:0055114 GO:0070887 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

272

Amino Acids

29.6

Weight (kDa)

6.44

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	73 - 206	3.1e-41	AhpC/TSA family
Redoxin	PF08534	73 - 210	4.8e-14	Redoxin
1-cysPrx_C	PF10417	227 - 262	6.6e-11	C-terminal domain of 1-Cys peroxiredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11630 AT5G06290 AT5G06290
fragaria_vesca	FvH4_6g20020 FvH4_6g20020
malus_domestica	MD12G1037300.v1.1 MD14G1036400.v1.1
prunus_persica	Prupe.7G097900_v2.0.a1
pyrus_communis	pycom12g03230 pycom14g03190
rosa_chinensis	RchiOBHm_Chr3g0475471
rosa_laevigata	RLG00000023842
rosa_multiflora	Rmu_sc0015717.1_g000003 Rmu_sc0016637.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406290
rosa_rugosa	Rorug03G0149000
rosa_samantha	Rh3AG199300 Rh3BG229100 Rh3CG223500 Rh3DG224400
rosa_wichuraiana	Rw3G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	450
AccII	CGCG	2 cut(s)	162, 230
AciI	CCGC	7 cut(s)	130, 148, 160, 162, 174, 203, 501
AclWI	GGATC	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	5 cut(s)	36, 218, 583, 584, 730
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	517, 555
AjnI	CCWGG	3 cut(s)	261, 582, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	5 cut(s)	183, 197, 208, 304, 787
AluI	AGCT	5 cut(s)	183, 197, 208, 304, 787
Alw26I	GTCTC	2 cut(s)	535, 674
AlwI	GGATC	1 cut(s)	568
AoxI	GGCC	3 cut(s)	124, 243, 699
ApeKI	GCWGC	3 cut(s)	5, 65, 694
ApoI	RAATTY	1 cut(s)	266
AspA2I	CCTAGG	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	143, 232
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	4 cut(s)	112, 419, 521, 532
AvaII	GGWCC	1 cut(s)	478
AvrII	CCTAGG	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	52, 681
BccI	CCATC	1 cut(s)	668
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	3 cut(s)	263, 584, 756
BciVI	GTATCC	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	535, 674
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	695
BfuI	GTATCC	1 cut(s)	531
BisI	GCNGC	4 cut(s)	6, 66, 163, 695
BlnI	CCTAGG	1 cut(s)	35
BlpI	GCTNAGC	1 cut(s)	788
BlsI	GCNGC	4 cut(s)	7, 67, 164, 696
BmcAI	AGTACT	1 cut(s)	800
Bme1390I	CCNGG	3 cut(s)	263, 584, 756
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	479
BmrFI	CCNGG	3 cut(s)	263, 584, 756
BplI	GAGNNNNNCTC	1 cut(s)	788
Bpu1102I	GCTNAGC	1 cut(s)	788
BsaI	GGTCTC	2 cut(s)	535, 674
BsaJI	CCNNGG	5 cut(s)	35, 160, 246, 583, 755
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 218, 583, 584, 730
Bse118I	RCCGGY	1 cut(s)	122
BseBI	CCWGG	3 cut(s)	263, 584, 756
BseDI	CCNNGG	5 cut(s)	35, 160, 246, 583, 755
BseGI	GGATG	1 cut(s)	682
BseLI	CCNNNNNNNGG	5 cut(s)	36, 218, 583, 584, 730
BseMII	CTCAG	1 cut(s)	802
BseRI	GAGGAG	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	52, 681
BseYI	CCCAGC	1 cut(s)	743
BsgI	GTGCAG	1 cut(s)	734
Bsh1236I	CGCG	2 cut(s)	162, 230
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	3 cut(s)	126, 245, 701
BsiEI	CGRYCG	1 cut(s)	400
BsiSI	CCGG	2 cut(s)	123, 233
BslI	CCNNNNNNNGG	5 cut(s)	36, 218, 583, 584, 730
BsmAI	GTCTC	2 cut(s)	535, 674
BsnI	GGCC	3 cut(s)	126, 245, 701
Bso31I	GGTCTC	2 cut(s)	535, 674
Bsp143I	GATC	2 cut(s)	397, 573
Bsp1720I	GCTNAGC	1 cut(s)	788
BspACI	CCGC	7 cut(s)	130, 148, 160, 162, 174, 203, 501
BspANI	GGCC	3 cut(s)	126, 245, 701
BspCNI	CTCAG	1 cut(s)	801
BspFNI	CGCG	2 cut(s)	162, 230
BspLI	GGNNCC	1 cut(s)	479
BspMAI	CTGCAG	1 cut(s)	699
BspPI	GGATC	1 cut(s)	568
BspTNI	GGTCTC	2 cut(s)	535, 674
BsrBI	CCGCTC	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	5 cut(s)	35, 160, 246, 583, 755
BssMI	GATC	2 cut(s)	397, 573
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	3 cut(s)	263, 584, 756
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	611
BstAPI	GCANNNNNTGC	2 cut(s)	703, 712
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	1 cut(s)	788
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	682
BstFNI	CGCG	2 cut(s)	162, 230
BstHHI	GCGC	2 cut(s)	143, 232
BstKTI	GATC	2 cut(s)	400, 576
BstMAI	GTCTC	2 cut(s)	535, 674
BstMBI	GATC	2 cut(s)	397, 573
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 138, 147, 194, 703, 712
BstNI	CCWGG	3 cut(s)	263, 584, 756
BstSCI	CCNGG	3 cut(s)	261, 582, 754
BstSFI	CTRYAG	1 cut(s)	695
BstUI	CGCG	2 cut(s)	162, 230
BstV1I	GCAGC	2 cut(s)	52, 681
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	3 cut(s)	126, 245, 701
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	682
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 460
Cac8I	GCNNGC	1 cut(s)	699
CfoI	GCGC	2 cut(s)	143, 232
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	478
Cfr42I	CCGCGG	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	799
CviAII	CATG	2 cut(s)	404, 474
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	1 cut(s)	788
DpnI	GATC	2 cut(s)	399, 575
DpnII	GATC	2 cut(s)	397, 573
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
EciI	GGCGGA	2 cut(s)	119, 163
Eco130I	CCWWGG	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	701
Eco31I	GGTCTC	2 cut(s)	535, 674
Eco47I	GGWCC	1 cut(s)	478
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	3 cut(s)	261, 582, 754
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	2 cut(s)	407, 477
FaiI	YATR	5 cut(s)	330, 405, 475, 564, 814
FatI	CATG	2 cut(s)	403, 473
FauI	CCCGC	2 cut(s)	155, 167
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	4 cut(s)	6, 66, 163, 695
FokI	GGATG	1 cut(s)	689
Fsp4HI	GCNGC	4 cut(s)	6, 66, 163, 695
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	2 cut(s)	142, 231
GluI	GCNGC	4 cut(s)	6, 66, 163, 695
GsaI	CCCAGC	1 cut(s)	747
HaeIII	GGCC	3 cut(s)	126, 245, 701
HapII	CCGG	2 cut(s)	123, 233
HhaI	GCGC	2 cut(s)	143, 232
Hin1II	CATG	2 cut(s)	407, 477
Hin6I	GCGC	2 cut(s)	141, 230
HinP1I	GCGC	2 cut(s)	141, 230
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	3 cut(s)	283, 334, 603
HpaII	CCGG	2 cut(s)	123, 233
HphI	GGTGA	4 cut(s)	112, 419, 521, 532
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	5 cut(s)	221, 310, 535, 573, 665
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	85, 127, 617
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	2 cut(s)	225, 276
HpyCH4V	TGCA	6 cut(s)	473, 593, 697, 706, 715, 809
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 138, 147, 194, 703, 712
HpyF3I	CTNAG	1 cut(s)	788
HpySE526I	ACGT	2 cut(s)	225, 276
Hsp92II	CATG	2 cut(s)	407, 477
HspAI	GCGC	2 cut(s)	141, 230
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	397, 573
LmnI	GCTCC	2 cut(s)	155, 205
Lsp1109I	GCAGC	2 cut(s)	52, 681
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	2 cut(s)	225, 276
MaeIII	GTNAC	2 cut(s)	509, 538
MalI	GATC	2 cut(s)	399, 575
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	2 cut(s)	397, 573
MboII	GAAGA	3 cut(s)	63, 334, 598
MluCI	AATT	4 cut(s)	266, 294, 549, 588
MlyI	GAGTC	1 cut(s)	597
MmeI	TCCRAC	3 cut(s)	199, 333, 658
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	2 cut(s)	123, 233
MspR9I	CCNGG	3 cut(s)	263, 584, 756
MvaI	CCWGG	3 cut(s)	263, 584, 756
MvnI	CGCG	2 cut(s)	162, 230
MwoI	GCNNNNNNNGC	6 cut(s)	14, 138, 147, 194, 703, 712
NdeII	GATC	2 cut(s)	397, 573
NlaIII	CATG	2 cut(s)	407, 477
NlaIV	GGNNCC	1 cut(s)	479
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	509, 538
PceI	AGGCCT	1 cut(s)	701
PfeI	GAWTC	2 cut(s)	283, 334
PkrI	GCNGC	4 cut(s)	7, 67, 164, 696
Ple19I	CGATCG	1 cut(s)	400
PleI	GAGTC	1 cut(s)	597
PpsI	GAGTC	1 cut(s)	597
Psp6I	CCWGG	3 cut(s)	261, 582, 754
PspFI	CCCAGC	1 cut(s)	743
PspGI	CCWGG	3 cut(s)	261, 582, 754
PspN4I	GGNNCC	1 cut(s)	479
PspPI	GGNCC	1 cut(s)	478
PstI	CTGCAG	1 cut(s)	699
PvuI	CGATCG	1 cut(s)	400
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	1 cut(s)	275
SacII	CCGCGG	1 cut(s)	163
SalI	GTCGAC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	4 cut(s)	6, 66, 163, 695
Sau3AI	GATC	2 cut(s)	397, 573
Sau96I	GGNCC	1 cut(s)	478
ScaI	AGTACT	1 cut(s)	800
SchI	GAGTC	1 cut(s)	597
ScrFI	CCNGG	3 cut(s)	263, 584, 756
SfcI	CTRYAG	1 cut(s)	695
Sfr303I	CCGCGG	1 cut(s)	163
SgrBI	CCGCGG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	4 cut(s)	266, 294, 549, 588
SseBI	AGGCCT	1 cut(s)	701
SsiI	CCGC	7 cut(s)	130, 148, 160, 162, 174, 203, 501
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	701
StyD4I	CCNGG	3 cut(s)	261, 582, 754
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	2 cut(s)	228, 279
TaqI	TCGA	3 cut(s)	240, 291, 450
TasI	AATT	4 cut(s)	266, 294, 549, 588
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	283, 334
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	2 cut(s)	19, 460
TseFI	GTSAC	2 cut(s)	509, 538
TseI	GCWGC	3 cut(s)	5, 65, 694
Tsp45I	GTSAC	2 cut(s)	509, 538
TspDTI	ATGAA	3 cut(s)	259, 598, 785
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	2 cut(s)	19, 460
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	266
XmaJI	CCTAGG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.