Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010282

Physical Location & Seq

Genomic Coordinates Forward (+)

4003379 .. 4006066

Gene Structure 2688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1037300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTGCCTCCACCGCCGCCCTCATCTCCTCCGTCCCCTCCCGCGCTTTCTCCTCCACCAAATCCACCCCTCTCGTCGCCGCCTTCTCCAAACCTATCTCCCAAACCCTAAACTTCCCCAAATCCATCCACGGCCTCCGCCTCCCGCGCGTCGCCCATTCTGCCTCCCTCCCCCGCGGCGACTCCCACACCCGCAAGTCCTTCATCGTCAAAGCCTCCGCCGGCGAGCTTCCCCTCGTCGGAAATGTTGCTCCTGATTTCGAAGCCGAGGCTGTTTTCGACCAAGAATTCGTCAATGTCGTCAAGCTCTCTGAGTACATTGGGAAGAAGTATGTGATTCTCTTTTTCTACCCATTGGACTTCACATTTGTTTGTCCTACAGAAATCACCGCTTTCAGTGACCGTCACGCAGAGTTTGCGGAGCTCAACACAGAAATCTTGGGTGTTTCAGTTGACAGTGTGTTTTCCCACCTTGCATGGGTCCAAACCGATAGGAAGTCTGGCGGTCTTGGTGACTTGAACTATCCATTGATCTCCGATGTCACCAAGTCAATTTCAAAATCGTATGGTGTGCTGATCCCAGATCAGGGAATCACTTTGAGAGGACTCTTCATTATTGACAAGGAAGGCGTCATTCAACACTCCACCATTAACAATCTTGCCATTGGCCGTAGTGTGGATGAGACTAAGAGAACGCTCCAGGCCTTGCAGTACGTGCAGGACAATCCCGATGAAGTTTGCCCTGCAGGGTGGAAGCCCGGGGAGAAGTCCATGAAGCCAGACCCCAAGGGCAGCAAAGAGTACTTCTCCGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010319 GO:0016209 GO:0016491 GO:0016684 GO:0031967 GO:0031975 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0051920 GO:0055114 GO:0070887 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

273

Amino Acids

29.65

Weight (kDa)

6.6

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	80 - 214	8.3e-40	AhpC/TSA family
Redoxin	PF08534	80 - 218	4.9e-13	Redoxin
1-cysPrx_C	PF10417	235 - 270	2.2e-11	C-terminal domain of 1-Cys peroxiredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11630 AT5G06290 AT5G06290
fragaria_vesca	FvH4_6g20020 FvH4_6g20020
malus_domestica	MD12G1037300.v1.1 MD14G1036400.v1.1
prunus_persica	Prupe.7G097900_v2.0.a1
pyrus_communis	pycom12g03230 pycom14g03190
rosa_chinensis	RchiOBHm_Chr3g0475471
rosa_laevigata	RLG00000023842
rosa_multiflora	Rmu_sc0015717.1_g000003 Rmu_sc0016637.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406290
rosa_rugosa	Rorug03G0149000
rosa_samantha	Rh3AG199300 Rh3BG229100 Rh3CG223500 Rh3DG224400
rosa_wichuraiana	Rw3G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	45, 148, 150, 177
AclWI	GGATC	1 cut(s)	571
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	3 cut(s)	317, 713, 803
AfiI	CCNNNNNNNGG	5 cut(s)	239, 478, 586, 587, 676
AgsI	TTSAA	3 cut(s)	520, 558, 638
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	3 cut(s)	229, 307, 424
AluI	AGCT	3 cut(s)	229, 307, 424
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	1 cut(s)	571
Ama87I	CYCGRG	1 cut(s)	758
AoxI	GGCC	3 cut(s)	133, 667, 702
ApeKI	GCWGC	2 cut(s)	5, 792
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	4 cut(s)	272, 304, 350, 382
AspLEI	GCGC	2 cut(s)	47, 150
AspS9I	GGNCC	1 cut(s)	481
AsuC2I	CCSGG	2 cut(s)	759, 760
AsuHPI	GGTGA	3 cut(s)	379, 524, 535
AsuII	TTCGAA	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	758
AvaII	GGWCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	804
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	2 cut(s)	148, 654
BciT130I	CCWGG	1 cut(s)	701
BcnI	CCSGG	2 cut(s)	759, 760
BcoDI	GTCTC	1 cut(s)	677
BfmI	CTRYAG	2 cut(s)	378, 744
BisI	GCNGC	5 cut(s)	6, 18, 81, 178, 793
BlsI	GCNGC	5 cut(s)	7, 19, 82, 179, 794
BmcAI	AGTACT	1 cut(s)	803
Bme1390I	CCNGG	3 cut(s)	701, 759, 760
Bme18I	GGWCC	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	758
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	482
BmrFI	CCNGG	3 cut(s)	701, 759, 760
BplI	GAGNNNNNCTC	1 cut(s)	791
BpmI	CTGGAG	1 cut(s)	683
Bpu14I	TTCGAA	1 cut(s)	261
BpuMI	CCSGG	2 cut(s)	759, 760
BsaAI	YACGTR	1 cut(s)	715
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	6 cut(s)	130, 175, 267, 758, 759, 786
Bsc4I	CCNNNNNNNGG	5 cut(s)	239, 478, 586, 587, 676
Bse118I	RCCGGY	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	6 cut(s)	130, 175, 267, 758, 759, 786
BseGI	GGATG	2 cut(s)	126, 685
BseLI	CCNNNNNNNGG	5 cut(s)	239, 478, 586, 587, 676
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	2 cut(s)	19, 43
BseXI	GCAGC	1 cut(s)	804
BsgI	GTGCAG	1 cut(s)	737
Bsh1236I	CGCG	4 cut(s)	45, 148, 150, 177
BshFI	GGCC	3 cut(s)	135, 669, 704
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	758
BsiSI	CCGG	2 cut(s)	222, 759
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	5 cut(s)	239, 478, 586, 587, 676
BsmAI	GTCTC	1 cut(s)	677
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	135, 669, 704
BsoBI	CYCGRG	1 cut(s)	758
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	3 cut(s)	531, 576, 583
BspANI	GGCC	3 cut(s)	135, 669, 704
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	4 cut(s)	45, 148, 150, 177
BspLI	GGNNCC	1 cut(s)	482
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	1 cut(s)	571
BspT104I	TTCGAA	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	6 cut(s)	130, 175, 267, 758, 759, 786
BssMI	GATC	3 cut(s)	531, 576, 583
BssNI	GRCGYC	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	2 cut(s)	404, 458
Bst6I	CTCTTC	1 cut(s)	614
BstACI	GRCGYC	1 cut(s)	630
BstAPI	GCANNNNNTGC	2 cut(s)	416, 715
BstBAI	YACGTR	1 cut(s)	715
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	223, 227
BstDEI	CTNAG	2 cut(s)	312, 687
BstDSI	CCRYGG	2 cut(s)	130, 175
BstF5I	GGATG	2 cut(s)	126, 685
BstFNI	CGCG	4 cut(s)	45, 148, 150, 177
BstHHI	GCGC	2 cut(s)	47, 150
BstKTI	GATC	3 cut(s)	534, 579, 586
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	3 cut(s)	531, 576, 583
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 147, 161, 416, 715
BstNI	CCWGG	1 cut(s)	701
BstSCI	CCNGG	3 cut(s)	699, 757, 758
BstSFI	CTRYAG	2 cut(s)	378, 744
BstUI	CGCG	4 cut(s)	45, 148, 150, 177
BstV1I	GCAGC	1 cut(s)	804
BsuRI	GGCC	3 cut(s)	135, 669, 704
BtgI	CCRYGG	2 cut(s)	130, 175
BtsCI	GGATG	2 cut(s)	126, 685
BtsIMutI	CAGTG	2 cut(s)	403, 463
Cac8I	GCNNGC	2 cut(s)	223, 227
CfoI	GCGC	2 cut(s)	47, 150
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	481
Cfr42I	CCGCGG	1 cut(s)	178
Cfr9I	CCCGGG	1 cut(s)	758
CseI	GACGC	2 cut(s)	139, 619
Csp6I	GTAC	3 cut(s)	316, 712, 802
CviAII	CATG	2 cut(s)	477, 772
CviQI	GTAC	3 cut(s)	316, 712, 802
DdeI	CTNAG	2 cut(s)	312, 687
DpnI	GATC	3 cut(s)	533, 578, 585
DpnII	GATC	3 cut(s)	531, 576, 583
EaeI	YGGCCR	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
EciI	GGCGGA	2 cut(s)	128, 208
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	786
Eco147I	AGGCCT	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	758
EcoICRI	GAGCTC	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	2 cut(s)	480, 775
FaiI	YATR	5 cut(s)	333, 478, 567, 773, 817
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	476, 771
FauI	CCCGC	4 cut(s)	50, 153, 182, 200
Fnu4HI	GCNGC	5 cut(s)	6, 18, 81, 178, 793
FokI	GGATG	2 cut(s)	113, 692
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	5 cut(s)	6, 18, 81, 178, 793
GlaI	GCGC	2 cut(s)	46, 149
GluI	GCNGC	5 cut(s)	6, 18, 81, 178, 793
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	3 cut(s)	135, 669, 704
HapII	CCGG	2 cut(s)	222, 759
HgaI	GACGC	2 cut(s)	139, 619
HhaI	GCGC	2 cut(s)	47, 150
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	2 cut(s)	480, 775
Hin6I	GCGC	2 cut(s)	45, 148
HinP1I	GCGC	2 cut(s)	45, 148
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	4 cut(s)	182, 337, 591, 606
HpaII	CCGG	2 cut(s)	222, 759
HphI	GGTGA	3 cut(s)	379, 524, 535
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	3 cut(s)	242, 313, 538
Hpy188III	TCNNGA	2 cut(s)	254, 728
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	3 cut(s)	80, 155, 242
HpyAV	CCTTC	3 cut(s)	94, 211, 620
HpyCH4III	ACNGT	2 cut(s)	404, 458
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	4 cut(s)	476, 709, 718, 746
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 147, 161, 416, 715
HpyF3I	CTNAG	2 cut(s)	312, 687
HpySE526I	ACGT	1 cut(s)	714
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	2 cut(s)	480, 775
HspAI	GCGC	2 cut(s)	45, 148
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	531, 576, 583
LmnI	GCTCC	3 cut(s)	256, 421, 702
Lsp1109I	GCAGC	1 cut(s)	804
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	4 cut(s)	398, 404, 512, 541
MalI	GATC	3 cut(s)	533, 578, 585
MboI	GATC	3 cut(s)	531, 576, 583
MboII	GAAGA	2 cut(s)	337, 601
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	2 cut(s)	287, 552
MlyI	GAGTC	2 cut(s)	176, 600
MmeI	TCCRAC	1 cut(s)	220
MreI	CGCCGGCG	1 cut(s)	221
MroNI	GCCGGC	1 cut(s)	221
MseI	TTAA	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	2 cut(s)	222, 759
MspR9I	CCNGG	3 cut(s)	701, 759, 760
MvaI	CCWGG	1 cut(s)	701
MvnI	CGCG	4 cut(s)	45, 148, 150, 177
MwoI	GCNNNNNNNGC	5 cut(s)	14, 147, 161, 416, 715
NaeI	GCCGGC	1 cut(s)	223
NciI	CCSGG	2 cut(s)	759, 760
NdeII	GATC	3 cut(s)	531, 576, 583
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	480, 775
NlaIV	GGNNCC	1 cut(s)	482
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	4 cut(s)	398, 404, 512, 541
NspV	TTCGAA	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	704
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	337, 591
PkrI	GCNGC	5 cut(s)	7, 19, 82, 179, 794
PleI	GAGTC	2 cut(s)	176, 600
PpsI	GAGTC	2 cut(s)	176, 600
Ppu21I	YACGTR	1 cut(s)	715
Psp124BI	GAGCTC	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	1 cut(s)	482
PspPI	GGNCC	1 cut(s)	481
PstI	CTGCAG	1 cut(s)	748
RsaI	GTAC	3 cut(s)	317, 713, 803
RsaNI	GTAC	3 cut(s)	316, 712, 802
SacI	GAGCTC	1 cut(s)	426
SacII	CCGCGG	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	5 cut(s)	6, 18, 81, 178, 793
Sau3AI	GATC	3 cut(s)	531, 576, 583
Sau96I	GGNCC	1 cut(s)	481
SbfI	CCTGCAGG	1 cut(s)	748
ScaI	AGTACT	1 cut(s)	803
SchI	GAGTC	2 cut(s)	176, 600
ScrFI	CCNGG	3 cut(s)	701, 759, 760
SdaI	CCTGCAGG	1 cut(s)	748
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	6 cut(s)	97, 231, 309, 426, 474, 717
SfcI	CTRYAG	2 cut(s)	378, 744
Sfr303I	CCGCGG	1 cut(s)	178
SfuI	TTCGAA	1 cut(s)	261
SgrAI	CRCCGGYG	1 cut(s)	221
SgrBI	CCGCGG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	481
SmaI	CCCGGG	1 cut(s)	760
Sse8387I	CCTGCAGG	1 cut(s)	748
Sse9I	AATT	2 cut(s)	287, 552
SseBI	AGGCCT	1 cut(s)	704
SstI	GAGCTC	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	704
StyD4I	CCNGG	3 cut(s)	699, 757, 758
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	2 cut(s)	404, 458
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	2 cut(s)	261, 279
TasI	AATT	2 cut(s)	287, 552
TatI	WGTACW	2 cut(s)	315, 801
TauI	GCSGC	3 cut(s)	20, 83, 180
TfiI	GAWTC	2 cut(s)	337, 591
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	2 cut(s)	403, 463
TseFI	GTSAC	4 cut(s)	398, 404, 512, 541
TseI	GCWGC	2 cut(s)	5, 792
Tsp45I	GTSAC	4 cut(s)	398, 404, 512, 541
TspDTI	ATGAA	4 cut(s)	193, 601, 747, 788
TspGWI	ACGGA	1 cut(s)	22
TspMI	CCCGGG	1 cut(s)	758
TspRI	CASTG	2 cut(s)	403, 463
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	1 cut(s)	287
XmaI	CCCGGG	1 cut(s)	758
ZrmI	AGTACT	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.