Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016637.1

Orthogroup ID

OG0010282

Physical Location & Seq

Genomic Coordinates Forward (+)

39030 .. 39626

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016637.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggccgcctcaacggctctcatctcctccacccctagggctttcgcctccgccaaatcctcatctctcgccgcctcttccatctccaagccccaaccccaaaccctaacattccccaaatccttcaccggcctccgcctcccatccccctcccgctccatctctctctcccgcggctcccattccgccaagtccttcgccgtcaaagcttccgctgagcttccgttggtcggaaacgttgcgccggattttgaagctgaggctgtttttgaccaggaattcatcaaggccttgcagtttgtgcaggacaaccctgatgaggtttgccccgctgggtggaagcctggggagaagtccatgaagccagaccccaagctcagcaaagagtacttctctgcaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010319 GO:0016209 GO:0016491 GO:0016684 GO:0031967 GO:0031975 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0051920 GO:0055114 GO:0070887 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

134

Amino Acids

14.2

Weight (kDa)

9.13

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11630 AT5G06290 AT5G06290
fragaria_vesca	FvH4_6g20020 FvH4_6g20020
malus_domestica	MD12G1037300.v1.1 MD14G1036400.v1.1
prunus_persica	Prupe.7G097900_v2.0.a1
pyrus_communis	pycom12g03230 pycom14g03190
rosa_chinensis	RchiOBHm_Chr3g0475471
rosa_laevigata	RLG00000023842
rosa_multiflora	Rmu_sc0015717.1_g000003 Rmu_sc0016637.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406290
rosa_rugosa	Rorug03G0149000
rosa_samantha	Rh3AG199300 Rh3BG229100 Rh3CG223500 Rh3DG224400
rosa_wichuraiana	Rw3G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	156
AccII	CGCG	1 cut(s)	174
AclI	AACGTT	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	4 cut(s)	36, 230, 319, 336
AgsI	TTSAA	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	273, 343
AluBI	AGCT	4 cut(s)	209, 220, 257, 376
AluI	AGCT	4 cut(s)	209, 220, 257, 376
AoxI	GGCC	3 cut(s)	3, 130, 288
ApoI	RAATTY	1 cut(s)	278
AspA2I	CCTAGG	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	118
AvrII	CCTAGG	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	258
BccI	CCATC	3 cut(s)	89, 151, 167
BceAI	ACGGC	2 cut(s)	30, 185
BciT130I	CCWGG	2 cut(s)	275, 345
BfaI	CTAG	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	14
BisI	GCNGC	3 cut(s)	6, 72, 175
BlnI	CCTAGG	1 cut(s)	35
BlpI	GCTNAGC	2 cut(s)	216, 377
BlsI	GCNGC	3 cut(s)	7, 73, 176
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	2 cut(s)	275, 345
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	2 cut(s)	275, 345
BplI	GAGNNNNNCTC	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu1102I	GCTNAGC	2 cut(s)	216, 377
BsaJI	CCNNGG	3 cut(s)	35, 172, 344
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 230, 319, 336
Bse118I	RCCGGY	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	275, 345
BseDI	CCNNGG	3 cut(s)	35, 172, 344
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	4 cut(s)	36, 230, 319, 336
BseMII	CTCAG	3 cut(s)	207, 249, 391
BseRI	GAGGAG	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	5, 132, 290
BsiSI	CCGG	2 cut(s)	129, 245
BslI	CCNNNNNNNGG	4 cut(s)	36, 230, 319, 336
BsnI	GGCC	3 cut(s)	5, 132, 290
Bsp1720I	GCTNAGC	2 cut(s)	216, 377
BspANI	GGCC	3 cut(s)	5, 132, 290
BspCNI	CTCAG	3 cut(s)	208, 250, 390
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	35, 172, 344
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	275, 345
Bst6I	CTCTTC	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstDEI	CTNAG	3 cut(s)	216, 258, 377
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	143
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 206, 301
BstNI	CCWGG	2 cut(s)	275, 345
BstSCI	CCNGG	2 cut(s)	273, 343
BstUI	CGCG	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	5, 132, 290
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	128
Cfr42I	CCGCGG	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	1 cut(s)	358
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	3 cut(s)	216, 258, 377
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	3 cut(s)	40, 125, 175
Eco130I	CCWWGG	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	273, 343
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	361
FaiI	YATR	2 cut(s)	359, 403
FatI	CATG	1 cut(s)	357
FauI	CCCGC	3 cut(s)	161, 179, 337
Fnu4HI	GCNGC	3 cut(s)	6, 72, 175
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	3 cut(s)	6, 72, 175
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	3 cut(s)	6, 72, 175
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	3 cut(s)	5, 132, 290
HapII	CCGG	2 cut(s)	129, 245
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HindIII	AAGCTT	1 cut(s)	207
HpaII	CCGG	2 cut(s)	129, 245
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	133, 205
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	295, 304, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 206, 301
HpyF3I	CTNAG	3 cut(s)	216, 258, 377
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	242
KspI	CCGCGG	1 cut(s)	175
LmnI	GCTCC	2 cut(s)	161, 182
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	237
MbiI	CCGCTC	1 cut(s)	156
MboII	GAAGA	1 cut(s)	69
MluCI	AATT	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	211
MspA1I	CMGCKG	3 cut(s)	174, 215, 332
MspI	CCGG	2 cut(s)	129, 245
MspR9I	CCNGG	2 cut(s)	275, 345
MvaI	CCWGG	2 cut(s)	275, 345
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	14, 206, 301
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	7, 73, 176
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	273, 343
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	2 cut(s)	273, 343
PspN4I	GGNNCC	1 cut(s)	178
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SacII	CCGCGG	1 cut(s)	175
SatI	GCNGC	3 cut(s)	6, 72, 175
ScaI	AGTACT	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	275, 345
SetI	ASST	6 cut(s)	211, 222, 240, 259, 324, 378
Sfr303I	CCGCGG	1 cut(s)	175
SgrBI	CCGCGG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	278
SseBI	AGGCCT	1 cut(s)	290
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	273, 343
StyI	CCWWGG	1 cut(s)	35
TaiI	ACGT	1 cut(s)	240
TasI	AATT	1 cut(s)	278
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	3 cut(s)	8, 74, 177
TspDTI	ATGAA	2 cut(s)	271, 374
TspGWI	ACGGA	1 cut(s)	213
XapI	RAATTY	1 cut(s)	278
XmaJI	CCTAGG	1 cut(s)	35
XspI	CTAG	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.