Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010282

Physical Location & Seq

Genomic Coordinates Forward (+)

3305901 .. 3308653

Gene Structure 2753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1036400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTGCCTCCACCGCCGCCCTCATTTCCTCGGCCCCCTCCCGCGCTTTCTCCTCCTCCAAATCCACCCCTCTCGTCGCCGCCTCCTCCAAACCCATCTCCCAAACCCTGACCTTCCCCAAATCCATCCACGGCCTCCGCCTCCCCCGCGTCGCCCATTCCGCCTCCCTCTCCCGCGGCGGCTCTCACGCCCGGAAGTCCTTCGTTGTCAAAGCCTCCGCCGTTGAGCTTCCCCTCGTCGGAAATGTTGCTCCTGATTTCGAAGCCGAGGCTGTTTTCGACCAGGAATTCATCAAGGTCAAGCTCTCTGAGTACATTGGGAAGAAGTATGTGATTCTCTTTTTCTACCCATTGGACTTCACGTTTGTTTGTCCTACAGGCAAGCATGAGATCACCGCTTTCAGCGACCGCCATGCTGAGTTTGCGGAGCTCAACACAGAAATCTTGGGTGTTTCAGTTGACAGTGTGTTTTCCCACCTCGCATGGGTCCAAACTGATAGGAAATCTGGCGGTCTTGGAGACTTGAAATATCCACTGATCTCTGATGTCACCAAATCAATTTCAAAATCTTATGACGTGCTGATCCCAGATCAGGGAATTGCTTTGAGAGGACTCTTCATTATTGACAAGGAAGGCGTCATTCAACACTCCACCGTCAACAATCTTGCCATTGGCCGTAGTGTAGATGAGACTAAGAGAACGCTCCAGGCCTTGCAGTACGTGCAGGACAACCCCGATGAAGTTTGCCCTGCTGGGTGGAAGCCTGGGGAGAAGTCCATGAAGCCAGACCCCAAGGGCAGCAAAGAGTACTTCTCCGCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010319 GO:0016209 GO:0016491 GO:0016684 GO:0031967 GO:0031975 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0051920 GO:0055114 GO:0070887 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

275

Amino Acids

29.75

Weight (kDa)

8.39

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	80 - 216	3.1e-37	AhpC/TSA family
Redoxin	PF08534	80 - 221	1e-12	Redoxin
1-cysPrx_C	PF10417	237 - 272	2.2e-11	C-terminal domain of 1-Cys peroxiredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11630 AT5G06290 AT5G06290
fragaria_vesca	FvH4_6g20020 FvH4_6g20020
malus_domestica	MD12G1037300.v1.1 MD14G1036400.v1.1
prunus_persica	Prupe.7G097900_v2.0.a1
pyrus_communis	pycom12g03230 pycom14g03190
rosa_chinensis	RchiOBHm_Chr3g0475471
rosa_laevigata	RLG00000023842
rosa_multiflora	Rmu_sc0015717.1_g000003 Rmu_sc0016637.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406290
rosa_rugosa	Rorug03G0149000
rosa_samantha	Rh3AG199300 Rh3BG229100 Rh3CG223500 Rh3DG224400
rosa_wichuraiana	Rw3G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	45, 150, 177
AclWI	GGATC	1 cut(s)	577
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	636
AfaI	GTAC	3 cut(s)	314, 719, 809
AfiI	CCNNNNNNNGG	4 cut(s)	239, 484, 592, 593
AgsI	TTSAA	3 cut(s)	526, 564, 644
AjiI	CACGTC	1 cut(s)	577
AjnI	CCWGG	3 cut(s)	282, 705, 763
AluBI	AGCT	3 cut(s)	229, 304, 430
AluI	AGCT	3 cut(s)	229, 304, 430
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	513, 683
AlwI	GGATC	1 cut(s)	577
AoxI	GGCC	4 cut(s)	33, 133, 673, 708
ApeKI	GCWGC	2 cut(s)	5, 798
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	34, 487
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	385, 541
AsuII	TTCGAA	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	810
BccI	CCATC	2 cut(s)	104, 134
BceAI	ACGGC	3 cut(s)	148, 206, 660
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	3 cut(s)	284, 707, 765
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	513, 683
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	6 cut(s)	6, 18, 81, 178, 181, 799
BlsI	GCNGC	6 cut(s)	7, 19, 82, 179, 182, 800
BmcAI	AGTACT	1 cut(s)	809
Bme1390I	CCNGG	4 cut(s)	193, 284, 707, 765
Bme18I	GGWCC	1 cut(s)	487
BmgBI	CACGTC	1 cut(s)	577
BmgT120I	GGNCC	2 cut(s)	34, 487
BmiI	GGNNCC	2 cut(s)	36, 488
BmrFI	CCNGG	4 cut(s)	193, 284, 707, 765
BplI	GAGNNNNNCTC	1 cut(s)	797
BpmI	CTGGAG	1 cut(s)	689
Bpu14I	TTCGAA	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	721
BsaHI	GRCGYC	1 cut(s)	636
BsaJI	CCNNGG	6 cut(s)	30, 130, 175, 267, 764, 792
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 484, 592, 593
BseBI	CCWGG	3 cut(s)	284, 707, 765
BseDI	CCNNGG	6 cut(s)	30, 130, 175, 267, 764, 792
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	4 cut(s)	239, 484, 592, 593
BseMII	CTCAG	2 cut(s)	300, 408
BseRI	GAGGAG	3 cut(s)	43, 46, 76
BseXI	GCAGC	1 cut(s)	810
BseYI	CCCAGC	1 cut(s)	752
BsgI	GTGCAG	1 cut(s)	743
Bsh1236I	CGCG	3 cut(s)	45, 150, 177
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	4 cut(s)	35, 135, 675, 710
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	239, 484, 592, 593
BsmAI	GTCTC	2 cut(s)	513, 683
BsnI	GGCC	4 cut(s)	35, 135, 675, 710
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	4 cut(s)	390, 537, 582, 589
BspANI	GGCC	4 cut(s)	35, 135, 675, 710
BspCNI	CTCAG	2 cut(s)	301, 409
BspFNI	CGCG	3 cut(s)	45, 150, 177
BspLI	GGNNCC	2 cut(s)	36, 488
BspPI	GGATC	1 cut(s)	577
BspT104I	TTCGAA	1 cut(s)	261
BssECI	CCNNGG	6 cut(s)	30, 130, 175, 267, 764, 792
BssMI	GATC	4 cut(s)	390, 537, 582, 589
BssNI	GRCGYC	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	792
Bst2UI	CCWGG	3 cut(s)	284, 707, 765
Bst4CI	ACNGT	2 cut(s)	464, 655
Bst6I	CTCTTC	1 cut(s)	620
BstACI	GRCGYC	1 cut(s)	636
BstAPI	GCANNNNNTGC	1 cut(s)	721
BstBAI	YACGTR	1 cut(s)	721
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	309, 417, 693
BstDSI	CCRYGG	2 cut(s)	130, 175
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	3 cut(s)	45, 150, 177
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	4 cut(s)	393, 540, 585, 592
BstMAI	GTCTC	2 cut(s)	513, 683
BstMBI	GATC	4 cut(s)	390, 537, 582, 589
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 147, 161, 422, 721
BstNI	CCWGG	3 cut(s)	284, 707, 765
BstSCI	CCNGG	4 cut(s)	191, 282, 705, 763
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	3 cut(s)	45, 150, 177
BstV1I	GCAGC	1 cut(s)	810
BsuRI	GGCC	4 cut(s)	35, 135, 675, 710
BtgI	CCRYGG	2 cut(s)	130, 175
BtrI	CACGTC	1 cut(s)	577
BtsCI	GGATG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	469, 533
Cac8I	GCNNGC	1 cut(s)	383
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	34, 487
Cfr42I	CCGCGG	1 cut(s)	178
CseI	GACGC	2 cut(s)	139, 625
Csp6I	GTAC	3 cut(s)	313, 718, 808
CviAII	CATG	4 cut(s)	386, 413, 483, 778
CviQI	GTAC	3 cut(s)	313, 718, 808
DdeI	CTNAG	3 cut(s)	309, 417, 693
DpnI	GATC	4 cut(s)	392, 539, 584, 591
DpnII	GATC	4 cut(s)	390, 537, 582, 589
EaeI	YGGCCR	1 cut(s)	673
Eam1104I	CTCTTC	1 cut(s)	620
EarI	CTCTTC	1 cut(s)	620
EciI	GGCGGA	3 cut(s)	128, 151, 208
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	792
Eco147I	AGGCCT	1 cut(s)	710
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	3 cut(s)	282, 705, 763
EcoT14I	CCWWGG	1 cut(s)	792
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	792
FaeI	CATG	4 cut(s)	389, 416, 486, 781
FaiI	YATR	7 cut(s)	330, 387, 414, 484, 573, 779, 823
FatI	CATG	4 cut(s)	385, 412, 482, 777
FauI	CCCGC	3 cut(s)	50, 155, 182
Fnu4HI	GCNGC	6 cut(s)	6, 18, 81, 178, 181, 799
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	6 cut(s)	6, 18, 81, 178, 181, 799
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	6 cut(s)	6, 18, 81, 178, 181, 799
GsaI	CCCAGC	1 cut(s)	756
GsuI	CTGGAG	1 cut(s)	689
HaeIII	GGCC	4 cut(s)	35, 135, 675, 710
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	2 cut(s)	139, 625
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	636
Hin1II	CATG	4 cut(s)	389, 416, 486, 781
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	2 cut(s)	460, 658
HindII	GTYRAC	2 cut(s)	460, 658
HinfI	GANTC	2 cut(s)	334, 612
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	2 cut(s)	385, 541
Hpy166II	GTNNAC	2 cut(s)	460, 658
Hpy188I	TCNGA	3 cut(s)	242, 310, 544
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	2 cut(s)	460, 658
Hpy99I	CGWCG	3 cut(s)	80, 155, 242
HpyAV	CCTTC	3 cut(s)	124, 211, 626
HpyCH4III	ACNGT	2 cut(s)	464, 655
HpyCH4IV	ACGT	3 cut(s)	362, 576, 720
HpyCH4V	TGCA	2 cut(s)	715, 724
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 147, 161, 422, 721
HpyF3I	CTNAG	3 cut(s)	309, 417, 693
HpySE526I	ACGT	3 cut(s)	362, 576, 720
Hsp92I	GRCGYC	1 cut(s)	636
Hsp92II	CATG	4 cut(s)	389, 416, 486, 781
HspAI	GCGC	1 cut(s)	45
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	390, 537, 582, 589
LmnI	GCTCC	3 cut(s)	256, 427, 708
Lsp1109I	GCAGC	1 cut(s)	810
MaeII	ACGT	3 cut(s)	362, 576, 720
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	4 cut(s)	392, 539, 584, 591
MboI	GATC	4 cut(s)	390, 537, 582, 589
MboII	GAAGA	2 cut(s)	334, 607
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	3 cut(s)	287, 558, 597
MlyI	GAGTC	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	4 cut(s)	193, 284, 707, 765
MvaI	CCWGG	3 cut(s)	284, 707, 765
MvnI	CGCG	3 cut(s)	45, 150, 177
MwoI	GCNNNNNNNGC	5 cut(s)	14, 147, 161, 422, 721
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	4 cut(s)	390, 537, 582, 589
NlaIII	CATG	4 cut(s)	389, 416, 486, 781
NlaIV	GGNNCC	2 cut(s)	36, 488
NmeAIII	GCCGAG	2 cut(s)	11, 292
NmuCI	GTSAC	1 cut(s)	547
NspV	TTCGAA	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	710
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	6 cut(s)	7, 19, 82, 179, 182, 800
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
Ppu21I	YACGTR	1 cut(s)	721
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	3 cut(s)	282, 705, 763
PspFI	CCCAGC	1 cut(s)	752
PspGI	CCWGG	3 cut(s)	282, 705, 763
PspN4I	GGNNCC	2 cut(s)	36, 488
PspPI	GGNCC	2 cut(s)	34, 487
RsaI	GTAC	3 cut(s)	314, 719, 809
RsaNI	GTAC	3 cut(s)	313, 718, 808
SacI	GAGCTC	1 cut(s)	432
SacII	CCGCGG	1 cut(s)	178
SatI	GCNGC	6 cut(s)	6, 18, 81, 178, 181, 799
Sau3AI	GATC	4 cut(s)	390, 537, 582, 589
Sau96I	GGNCC	2 cut(s)	34, 487
ScaI	AGTACT	1 cut(s)	809
SchI	GAGTC	1 cut(s)	606
ScrFI	CCNGG	4 cut(s)	193, 284, 707, 765
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	9 cut(s)	116, 231, 300, 306, 365, 432, 480, 579, 723
SfcI	CTRYAG	1 cut(s)	375
Sfr303I	CCGCGG	1 cut(s)	178
SfuI	TTCGAA	1 cut(s)	261
SgrBI	CCGCGG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	487
Sse9I	AATT	3 cut(s)	287, 558, 597
SseBI	AGGCCT	1 cut(s)	710
SstI	GAGCTC	1 cut(s)	432
StuI	AGGCCT	1 cut(s)	710
StyD4I	CCNGG	4 cut(s)	191, 282, 705, 763
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	2 cut(s)	464, 655
TaiI	ACGT	3 cut(s)	365, 579, 723
TaqI	TCGA	2 cut(s)	261, 279
TasI	AATT	3 cut(s)	287, 558, 597
TatI	WGTACW	2 cut(s)	312, 807
TauI	GCSGC	4 cut(s)	20, 83, 180, 183
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	2 cut(s)	469, 540
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	2 cut(s)	5, 798
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	4 cut(s)	280, 607, 753, 794
TspRI	CASTG	2 cut(s)	469, 540
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	200
ZrmI	AGTACT	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.