AT3G11640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012142
Physical Location & Seq
Forward (+)
3674282 .. 3675262
981 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11640.1

Sequence Viewer

Length: 561 bp
ATGCATGCCCTCACCAACTCCGGCGCCGTACTTCTCGCCGTGTTACTCTTCTTTCTGCTCATCCTTTTCGCCGAGCTCTCTTACATCTTTTGTTGCCGCACCGGATCTTTACCGTCTCCGGCAAGTAAAGAGGTTCTTTTCCAATTCTTGATGTGTTGCAAGAAGAATCACCACCACTCTCGTATTGAGCCATGCACCGGTATTGTTTCTGTACAGATGGAGGAGGATGTTGTTGCTGCGGCGGTGCCTGAGGAGGAATTCGCGGCGGCGGACAAGTGGCGGGTGTCGAGGCTTCTCTTCACAATTGAAGAAGAGGATTTGGAACTGGAAGATGATGATGATGATGTGATCTCTGCGGAGGTAGATAATGGCTTCGAAGTCCAAGTTGATATTCCGGTGGAGTATTCCGGCGATCCAACTCCGTTCTTGACGCCGTGCAACTCACCTCCTTACTTTACTCCTTCGCCATCTCCTGGTCGGGATATGGATGACGTCATTGATGTATATGAAGTCAGCAGCAGAAACTGTTGTTTCAATTTCCAAGGCTCTCAGATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.73

Weight (kDa)

4.16

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11640 AT3G11640 AT3G52480
fragaria_vesca FvH4_6g20110
malus_domestica MD14G1037100.v1.1
prunus_persica Prupe.2G218900_v2.0.a1 Prupe.7G097300_v2.0.a1
pyrus_communis pycom12g03290 pycom14g03240
rosa_chinensis RchiOBHm_Chr3g0475571
rosa_laevigata RLG00000023833
rosa_multiflora Rmu_sc0000539.1_g000027
rosa_roxburghii Rroxscaffold_6G00406140
rosa_rugosa Rorug03G0150400
rosa_samantha Rh3AG200000 Rh3BG230400 Rh3CG224700 Rh3DG225400
rosa_wichuraiana Rw3G018140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
AccB1I GGYRCC 2 cut(s) 23, 244
AccB7I CCANNNNNTGG 1 cut(s) 473
AccII CGCG 1 cut(s) 263
AciI CCGC 8 cut(s) 97, 239, 242, 263, 266, 269, 280, 356
AclWI GGATC 2 cut(s) 112, 407
AcsI RAATTY 1 cut(s) 257
AcyI GRCGYC 3 cut(s) 24, 431, 492
AfaI GTAC 2 cut(s) 30, 213
AfiI CCNNNNNNNGG 2 cut(s) 197, 473
AgeI ACCGGT 1 cut(s) 197
AgsI TTSAA 2 cut(s) 308, 535
AjnI CCWGG 1 cut(s) 472
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 2 cut(s) 112, 407
AlwNI CAGNNNCTG 1 cut(s) 525
ApeKI GCWGC 2 cut(s) 236, 516
ApoI RAATTY 1 cut(s) 257
AsiGI ACCGGT 1 cut(s) 197
AspLEI GCGC 1 cut(s) 26
AsuHPI GGTGA 3 cut(s) 4, 161, 435
AsuII TTCGAA 1 cut(s) 375
AxyI CCTNAGG 1 cut(s) 249
BanI GGYRCC 2 cut(s) 23, 244
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 223, 528
BccI CCATC 2 cut(s) 211, 475
BceAI ACGGC 3 cut(s) 11, 23, 418
BciT130I CCWGG 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 27
BisI GCNGC 6 cut(s) 97, 237, 240, 264, 267, 517
BlsI GCNGC 6 cut(s) 98, 238, 241, 265, 268, 518
Bme1390I CCNGG 1 cut(s) 474
BmiI GGNNCC 2 cut(s) 25, 246
BmrFI CCNGG 1 cut(s) 474
Bpu14I TTCGAA 1 cut(s) 375
BsaHI GRCGYC 3 cut(s) 24, 431, 492
BsaJI CCNNGG 1 cut(s) 541
BsaWI WCCGGW 3 cut(s) 101, 197, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 473
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 330
Bse21I CCTNAGG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 541
BseGI GGATG 3 cut(s) 60, 232, 493
BseLI CCNNNNNNNGG 2 cut(s) 197, 473
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 2 cut(s) 236, 266
BseXI GCAGC 2 cut(s) 223, 528
Bsh1236I CGCG 1 cut(s) 263
BshNI GGYRCC 2 cut(s) 23, 244
BshTI ACCGGT 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 6 cut(s) 21, 102, 119, 198, 395, 408
BslI CCNNNNNNNGG 2 cut(s) 197, 473
BsmAI GTCTC 1 cut(s) 120
BsmBI CGTCTC 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 78
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 104, 348, 412
BspACI CCGC 8 cut(s) 97, 239, 242, 263, 266, 269, 280, 356
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 2 cut(s) 25, 246
BspPI GGATC 2 cut(s) 112, 407
BspT104I TTCGAA 1 cut(s) 375
BspT107I GGYRCC 2 cut(s) 23, 244
BsrFI RCCGGY 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 541
BssMI GATC 3 cut(s) 104, 348, 412
BssNI GRCGYC 3 cut(s) 24, 431, 492
BssT1I CCWWGG 1 cut(s) 541
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 2 cut(s) 114, 527
Bst6I CTCTTC 3 cut(s) 53, 302, 306
BstACI GRCGYC 3 cut(s) 24, 431, 492
BstAUI TGTACA 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 249, 549
BstF5I GGATG 3 cut(s) 60, 232, 493
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 3 cut(s) 107, 351, 415
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 3 cut(s) 104, 348, 412
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 472
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 223, 528
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
Bsu36I CCTNAGG 1 cut(s) 249
BtsCI GGATG 3 cut(s) 60, 232, 493
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 525
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 197
CseI GACGC 1 cut(s) 439
Csp6I GTAC 2 cut(s) 29, 212
CspAI ACCGGT 1 cut(s) 197
CviAII CATG 2 cut(s) 5, 192
CviJI RGCY 5 cut(s) 76, 190, 292, 372, 546
CviKI_1 RGCY 5 cut(s) 76, 190, 292, 372, 546
CviQI GTAC 2 cut(s) 29, 212
DdeI CTNAG 2 cut(s) 249, 549
DinI GGCGCC 1 cut(s) 25
DpnI GATC 3 cut(s) 106, 350, 414
DpnII GATC 3 cut(s) 104, 348, 412
Eam1104I CTCTTC 3 cut(s) 53, 302, 306
EarI CTCTTC 3 cut(s) 53, 302, 306
EciI GGCGGA 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 76
Eco81I CCTNAGG 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 541
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 78
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 541
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 2 cut(s) 8, 195
FaiI YATR 5 cut(s) 6, 193, 485, 505, 507
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FatI CATG 2 cut(s) 4, 191
FauI CCCGC 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 97, 237, 240, 264, 267, 517
FokI GGATG 3 cut(s) 47, 239, 500
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 6 cut(s) 97, 237, 240, 264, 267, 517
GlaI GCGC 1 cut(s) 25
GluI GCNGC 6 cut(s) 97, 237, 240, 264, 267, 517
HaeII RGCGCY 1 cut(s) 27
HapII CCGG 6 cut(s) 21, 102, 119, 198, 395, 408
HgaI GACGC 1 cut(s) 439
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 3 cut(s) 24, 431, 492
Hin1II CATG 2 cut(s) 8, 195
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 1 cut(s) 166
HpaII CCGG 6 cut(s) 21, 102, 119, 198, 395, 408
HphI GGTGA 3 cut(s) 4, 161, 435
Hpy188I TCNGA 1 cut(s) 552
Hpy188III TCNNGA 3 cut(s) 148, 427, 479
HpyAV CCTTC 1 cut(s) 471
HpyCH4III ACNGT 2 cut(s) 114, 527
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 4 cut(s) 4, 159, 195, 438
HpyF3I CTNAG 2 cut(s) 249, 549
HpySE526I ACGT 1 cut(s) 492
Hsp92I GRCGYC 3 cut(s) 24, 431, 492
Hsp92II CATG 2 cut(s) 8, 195
HspAI GCGC 1 cut(s) 24
KasI GGCGCC 1 cut(s) 23
Kzo9I GATC 3 cut(s) 104, 348, 412
Lsp1109I GCAGC 2 cut(s) 223, 528
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 42
MalI GATC 3 cut(s) 106, 350, 414
MboI GATC 3 cut(s) 104, 348, 412
MboII GAAGA 6 cut(s) 40, 175, 289, 320, 323, 341
MfeI CAATTG 1 cut(s) 303
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 4 cut(s) 143, 257, 303, 535
Mly113I GGCGCC 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 440
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 559
MspI CCGG 6 cut(s) 21, 102, 119, 198, 395, 408
MspR9I CCNGG 1 cut(s) 474
MunI CAATTG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 474
MvnI CGCG 1 cut(s) 263
NarI GGCGCC 1 cut(s) 24
NdeII GATC 3 cut(s) 104, 348, 412
NlaIII CATG 2 cut(s) 8, 195
NlaIV GGNNCC 2 cut(s) 25, 246
NmeAIII GCCGAG 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
NspV TTCGAA 1 cut(s) 375
PaeI GCATGC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 166
PflMI CCANNNNNTGG 1 cut(s) 473
PinAI ACCGGT 1 cut(s) 197
PkrI GCNGC 6 cut(s) 98, 238, 241, 265, 268, 518
PluTI GGCGCC 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 2 cut(s) 25, 246
PstNI CAGNNNCTG 1 cut(s) 525
PsuI RGATCY 1 cut(s) 104
RsaI GTAC 2 cut(s) 30, 213
RsaNI GTAC 2 cut(s) 29, 212
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 559
SatI GCNGC 6 cut(s) 97, 237, 240, 264, 267, 517
Sau3AI GATC 3 cut(s) 104, 348, 412
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 1 cut(s) 78
SetI ASST 5 cut(s) 78, 135, 363, 448, 495
SfoI GGCGCC 1 cut(s) 25
SfuI TTCGAA 1 cut(s) 375
SphI GCATGC 1 cut(s) 8
Sse9I AATT 4 cut(s) 143, 257, 303, 535
SsiI CCGC 8 cut(s) 97, 239, 242, 263, 266, 269, 280, 356
SspDI GGCGCC 1 cut(s) 23
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 2 cut(s) 114, 527
TaiI ACGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 287, 375
TasI AATT 4 cut(s) 143, 257, 303, 535
TatI WGTACW 1 cut(s) 211
TauI GCSGC 4 cut(s) 99, 242, 266, 269
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 559
Tru9I TTAA 1 cut(s) 559
TseI GCWGC 2 cut(s) 236, 516
TspDTI ATGAA 1 cut(s) 522
TspGWI ACGGA 1 cut(s) 411
Van91I CCANNNNNTGG 1 cut(s) 473
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 8
ZraI GACGTC 1 cut(s) 493
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.