pycom12g03290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0012142
Physical Location & Seq
Forward (+)
3011369 .. 3011836
468 bp
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UTR
Exon/CDS
Intron
pycom12g03290.1

Sequence Viewer

Length: 468 bp
ATGAGTGGTCGTCTTGGCAAGCTCGGGACAACTCTCACTGTAGTTTTTGCTGTCACTCTCGCCGCCCTTATAGCACAGTTCTTCTTCCTCCTCTGGCGGCGAAGGAAGTCCCAGTTTCCGACCAGCATCGGGCCCCACGAAGCTCATCATAACAACCGACAACCTAGCTCACTGCACCGCAATATCGACGTGGACGAGGTGTTCAAGTGGCAGCAGCGACTGTACGGCGTGTCGTCCAGGGTGCTGTTCACGATCGAGGAGGAGGAAGAGAGAGAGGGTCTGGACTCCGAGACGCCGACAACGACGTATTCATCCTGTGCGGAGAAAGAGGCGAAGACGCTGGTTCTGGATGTAGCTGTCACTATGAGAGTAGAGGTGGAGGAGGCAACGCCGCCGTTTACTACGCCATGTGCTTCGCCGCCGTACTATACGCCTTCGCCTTCTCCTAGTCGTGATTTTGTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.48

Weight (kDa)

5.81

Isoelectric Point (pI)

66.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11640 AT3G11640 AT3G52480
fragaria_vesca FvH4_6g20110
malus_domestica MD14G1037100.v1.1
prunus_persica Prupe.2G218900_v2.0.a1 Prupe.7G097300_v2.0.a1
pyrus_communis pycom12g03290 pycom14g03240
rosa_chinensis RchiOBHm_Chr3g0475571
rosa_laevigata RLG00000023833
rosa_multiflora Rmu_sc0000539.1_g000027
rosa_roxburghii Rroxscaffold_6G00406140
rosa_rugosa Rorug03G0150400
rosa_samantha Rh3AG200000 Rh3BG230400 Rh3CG224700 Rh3DG225400
rosa_wichuraiana Rw3G018140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 63, 97, 178, 320, 392, 419
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 2 cut(s) 224, 425
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 1 cut(s) 205
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 236
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 4 cut(s) 22, 143, 168, 356
AluI AGCT 4 cut(s) 22, 143, 168, 356
Alw26I GTCTC 1 cut(s) 284
AlwNI CAGNNNCTG 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 1 cut(s) 131
ApaI GGGCCC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 211, 214
AspS9I GGNCC 2 cut(s) 131, 132
AvaI CYCGRG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 223, 226
BceAI ACGGC 3 cut(s) 241, 379, 406
BciT130I CCWGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 2 cut(s) 165, 447
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 6 cut(s) 63, 98, 212, 215, 392, 419
BlsI GCNGC 6 cut(s) 64, 99, 213, 216, 393, 420
Bme1390I CCNGG 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 131, 132
BmiI GGNNCC 2 cut(s) 133, 134
BmrFI CCNGG 1 cut(s) 238
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 311, 355
BseLI CCNNNNNNNGG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 4 cut(s) 80, 272, 275, 395
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 2 cut(s) 223, 226
BsgI GTGCAG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 23
BslFI GGGAC 2 cut(s) 40, 94
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 284
BsmBI CGTCTC 1 cut(s) 284
BsmFI GGGAC 2 cut(s) 40, 94
BsnI GGCC 1 cut(s) 133
BsoBI CYCGRG 1 cut(s) 23
Bsp120I GGGCCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 6 cut(s) 63, 97, 178, 320, 392, 419
BspANI GGCC 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 133, 134
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 1 cut(s) 252
BssNI GRCGYC 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 3 cut(s) 40, 78, 222
Bst6I CTCTTC 1 cut(s) 261
BstACI GRCGYC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 20
BstF5I GGATG 2 cut(s) 311, 355
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 1 cut(s) 252
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 223, 226
BstV2I GAAGAC 1 cut(s) 341
BsuRI GGCC 1 cut(s) 133
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 311, 355
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 2 cut(s) 36, 170
Cac8I GCNNGC 1 cut(s) 20
CaiI CAGNNNCTG 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 131, 132
CseI GACGC 2 cut(s) 301, 346
Csp6I GTAC 2 cut(s) 223, 424
CviAII CATG 1 cut(s) 408
CviJI RGCY 5 cut(s) 22, 133, 143, 168, 356
CviKI_1 RGCY 5 cut(s) 22, 133, 143, 168, 356
CviQI GTAC 2 cut(s) 223, 424
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 1 cut(s) 411
FaiI YATR 5 cut(s) 71, 150, 365, 409, 429
FaqI GGGAC 2 cut(s) 40, 94
FatI CATG 1 cut(s) 407
Fnu4HI GCNGC 6 cut(s) 63, 98, 212, 215, 392, 419
FokI GGATG 2 cut(s) 298, 362
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 6 cut(s) 63, 98, 212, 215, 392, 419
FspBI CTAG 2 cut(s) 165, 447
GluI GCNGC 6 cut(s) 63, 98, 212, 215, 392, 419
HaeIII GGCC 1 cut(s) 133
HgaI GACGC 2 cut(s) 301, 346
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 1 cut(s) 411
HinfI GANTC 1 cut(s) 284
Hpy166II GTNNAC 3 cut(s) 193, 249, 399
Hpy188I TCNGA 2 cut(s) 120, 289
Hpy188III TCNNGA 5 cut(s) 25, 250, 281, 347, 452
Hpy8I GTNNAC 3 cut(s) 193, 249, 399
Hpy99I CGWCG 2 cut(s) 191, 307
HpyAV CCTTC 3 cut(s) 96, 444, 450
HpyCH4III ACNGT 3 cut(s) 40, 78, 222
HpyCH4IV ACGT 2 cut(s) 189, 305
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpySE526I ACGT 2 cut(s) 189, 305
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 1 cut(s) 411
Kzo9I GATC 1 cut(s) 252
LpnPI CCDG 9 cut(s) 79, 125, 136, 223, 250, 266, 326, 328, 332
Lsp1109I GCAGC 2 cut(s) 223, 226
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 165, 447
MaeII ACGT 2 cut(s) 189, 305
MaeIII GTNAC 2 cut(s) 52, 358
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 4 cut(s) 73, 76, 278, 346
MhlI GDGCHC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 252
NlaIII CATG 1 cut(s) 411
NlaIV GGNNCC 2 cut(s) 133, 134
NmuCI GTSAC 2 cut(s) 52, 358
PcsI WCGNNNNNNNCGW 3 cut(s) 135, 192, 299
PkrI GCNGC 6 cut(s) 64, 99, 213, 216, 393, 420
Ple19I CGATCG 1 cut(s) 255
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 133, 134
PspOMI GGGCCC 1 cut(s) 131
PspPI GGNCC 2 cut(s) 131, 132
PstNI CAGNNNCTG 1 cut(s) 220
PvuI CGATCG 1 cut(s) 255
RsaI GTAC 2 cut(s) 224, 425
RsaNI GTAC 2 cut(s) 223, 424
SatI GCNGC 6 cut(s) 63, 98, 212, 215, 392, 419
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 131, 132
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 135
SetI ASST 9 cut(s) 24, 145, 166, 170, 192, 201, 308, 358, 378
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 39
SsiI CCGC 6 cut(s) 63, 97, 178, 320, 392, 419
SspMI CTAG 2 cut(s) 165, 447
StyD4I CCNGG 1 cut(s) 236
TaaI ACNGT 3 cut(s) 40, 78, 222
TaiI ACGT 2 cut(s) 192, 308
TaqI TCGA 2 cut(s) 186, 255
TauI GCSGC 4 cut(s) 65, 100, 394, 421
TscAI CASTG 2 cut(s) 43, 177
TseFI GTSAC 2 cut(s) 52, 358
TseI GCWGC 2 cut(s) 211, 214
Tsp45I GTSAC 2 cut(s) 52, 358
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 2 cut(s) 43, 177
XspI CTAG 2 cut(s) 165, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.