Prupe.2G218900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012142
Physical Location & Seq
Reverse (-)
24803137 .. 24803610
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G218900.1

Sequence Viewer

Length: 375 bp
ATGAATGTTGGTCTGAGCAAGCTCGGGACTGCGCTCACTGTAGTGTTTGCGGCCATTCTCGCAGCCCTAGTAGCCCAGCTCTTCTTCCTCCTTTGGCGCCGGCGGAACAGCGTCGACGTTGACGTGGACGAAGTGTTCAAGTGGCAGCAGGCATTGTACGACGTGTCATTGAGTGTTTTGTTCACGATCGAGGAGGAGGAGGAGAGAAGGGCGGAGAAAGAGGTGAAGACGGCAACGACGGTGTTGCTAGACGTAGCTGTGATGGTGATGAGTGTAGAGGTGGACGACAGGACGACACCGTTTTCGACTCCTTGTGCTTCGCTGCCGTACTATACTCCGTCGCCTTCTCCCGATCGTGAGACTTGTAGCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.85

Weight (kDa)

4.49

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11640 AT3G11640 AT3G52480
fragaria_vesca FvH4_6g20110
malus_domestica MD14G1037100.v1.1
prunus_persica Prupe.2G218900_v2.0.a1 Prupe.7G097300_v2.0.a1
pyrus_communis pycom12g03290 pycom14g03240
rosa_chinensis RchiOBHm_Chr3g0475571
rosa_laevigata RLG00000023833
rosa_multiflora Rmu_sc0000539.1_g000027
rosa_roxburghii Rroxscaffold_6G00406140
rosa_rugosa Rorug03G0150400
rosa_samantha Rh3AG200000 Rh3BG230400 Rh3CG224700 Rh3DG225400
rosa_wichuraiana Rw3G018140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AccI GTMKAC 1 cut(s) 114
AciI CCGC 3 cut(s) 50, 103, 212
AcoI YGGCCR 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 2 cut(s) 158, 329
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 1 cut(s) 139
AjiI CACGTC 2 cut(s) 124, 163
AleI CACNNNNGTG 1 cut(s) 41
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 3 cut(s) 22, 79, 257
AluI AGCT 3 cut(s) 22, 79, 257
Alw26I GTCTC 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 62, 145, 322
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
AspLEI GCGC 2 cut(s) 34, 99
AsuHPI GGTGA 2 cut(s) 235, 277
AvaI CYCGRG 1 cut(s) 23
BanI GGYRCC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 233
BbvI GCAGC 3 cut(s) 74, 157, 309
BccI CCATC 1 cut(s) 256
BceAI ACGGC 2 cut(s) 246, 310
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 2 cut(s) 68, 248
BfmI CTRYAG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 100
BisI GCNGC 4 cut(s) 51, 63, 146, 323
BlsI GCNGC 4 cut(s) 52, 64, 147, 324
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 2 cut(s) 124, 163
BmiI GGNNCC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 97
Bse118I RCCGGY 1 cut(s) 99
BseMII CTCAG 1 cut(s) 5
BseRI GAGGAG 4 cut(s) 206, 209, 212, 215
BseXI GCAGC 3 cut(s) 74, 157, 309
BseYI CCCAGC 1 cut(s) 75
Bsh1285I CGRYCG 2 cut(s) 189, 355
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 96
BsiEI CGRYCG 2 cut(s) 189, 355
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 23
Bsp143I GATC 2 cut(s) 186, 352
BspACI CCGC 3 cut(s) 50, 103, 212
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 98
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 99
BssMI GATC 2 cut(s) 186, 352
BssNI GRCGYC 1 cut(s) 97
Bst4CI ACNGT 3 cut(s) 40, 241, 300
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 97
BstC8I GCNNGC 3 cut(s) 20, 101, 150
BstDEI CTNAG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 2 cut(s) 34, 99
BstKTI GATC 2 cut(s) 189, 355
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 2 cut(s) 186, 352
BstMCI CGRYCG 2 cut(s) 189, 355
BstMWI GCNNNNNNNGC 2 cut(s) 59, 71
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 74, 157, 309
BstV2I GAAGAC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 53
BtrI CACGTC 2 cut(s) 124, 163
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 3 cut(s) 20, 101, 150
CfoI GCGC 2 cut(s) 34, 99
Cfr10I RCCGGY 1 cut(s) 99
CseI GACGC 1 cut(s) 100
Csp6I GTAC 2 cut(s) 157, 328
CviJI RGCY 6 cut(s) 22, 53, 65, 74, 79, 257
CviKI_1 RGCY 6 cut(s) 22, 53, 65, 74, 79, 257
CviQI GTAC 2 cut(s) 157, 328
DdeI CTNAG 1 cut(s) 14
DinI GGCGCC 1 cut(s) 98
DpnI GATC 2 cut(s) 188, 354
DpnII GATC 2 cut(s) 186, 352
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 2 cut(s) 118, 227
Eco88I CYCGRG 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
FaiI YATR 1 cut(s) 333
FaqI GGGAC 1 cut(s) 40
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 51, 63, 146, 323
Fsp4HI GCNGC 4 cut(s) 51, 63, 146, 323
FspBI CTAG 2 cut(s) 68, 248
GlaI GCGC 2 cut(s) 33, 98
GluI GCNGC 4 cut(s) 51, 63, 146, 323
GsaI CCCAGC 1 cut(s) 79
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 100
HgaI GACGC 1 cut(s) 100
HhaI GCGC 2 cut(s) 34, 99
Hin1I GRCGYC 1 cut(s) 97
Hin6I GCGC 2 cut(s) 32, 97
HinP1I GCGC 2 cut(s) 32, 97
HincII GTYRAC 2 cut(s) 115, 121
HindII GTYRAC 2 cut(s) 115, 121
HinfI GANTC 1 cut(s) 307
HpaII CCGG 1 cut(s) 100
HphI GGTGA 2 cut(s) 235, 277
Hpy166II GTNNAC 5 cut(s) 115, 121, 127, 183, 283
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 4 cut(s) 25, 184, 350, 356
Hpy8I GTNNAC 5 cut(s) 115, 121, 127, 183, 283
Hpy99I CGWCG 5 cut(s) 116, 119, 164, 241, 343
HpyAV CCTTC 2 cut(s) 201, 354
HpyCH4III ACNGT 3 cut(s) 40, 241, 300
HpyCH4IV ACGT 4 cut(s) 117, 123, 162, 252
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 71
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 4 cut(s) 117, 123, 162, 252
Hsp92I GRCGYC 1 cut(s) 97
HspAI GCGC 2 cut(s) 32, 97
KasI GGCGCC 1 cut(s) 96
KroI GCCGGC 1 cut(s) 99
KroNI GCCGGC 1 cut(s) 101
Kzo9I GATC 2 cut(s) 186, 352
LguI GCTCTTC 1 cut(s) 86
LpnPI CCDG 4 cut(s) 89, 113, 134, 274
Lsp1109I GCAGC 3 cut(s) 74, 157, 309
MaeI CTAG 2 cut(s) 68, 248
MaeII ACGT 4 cut(s) 117, 123, 162, 252
MalI GATC 2 cut(s) 188, 354
MboI GATC 2 cut(s) 186, 352
MboII GAAGA 3 cut(s) 73, 76, 238
Mly113I GGCGCC 1 cut(s) 97
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 7 cut(s) 98, 184, 187, 190, 193, 214, 271
MreI CGCCGGCG 1 cut(s) 99
MroNI GCCGGC 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 59, 71
NaeI GCCGGC 1 cut(s) 101
NarI GGCGCC 1 cut(s) 97
NdeII GATC 2 cut(s) 186, 352
NgoMIV GCCGGC 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 98
OliI CACNNNNGTG 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 101
PkrI GCNGC 4 cut(s) 52, 64, 147, 324
Ple19I CGATCG 2 cut(s) 189, 355
PleI GAGTC 1 cut(s) 301
PluTI GGCGCC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 98
PvuI CGATCG 2 cut(s) 189, 355
RsaI GTAC 2 cut(s) 158, 329
RsaNI GTAC 2 cut(s) 157, 328
RseI CAYNNNNRTG 1 cut(s) 41
SalI GTCGAC 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 86
SatI GCNGC 4 cut(s) 51, 63, 146, 323
Sau3AI GATC 2 cut(s) 186, 352
SchI GAGTC 1 cut(s) 301
SetI ASST 9 cut(s) 24, 81, 120, 126, 165, 225, 255, 259, 282
SfcI CTRYAG 1 cut(s) 39
SfoI GGCGCC 1 cut(s) 98
SgrAI CRCCGGYG 1 cut(s) 99
SgrDI CGTCGACG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 41
SsiI CCGC 3 cut(s) 50, 103, 212
SspDI GGCGCC 1 cut(s) 96
SspMI CTAG 2 cut(s) 68, 248
TaaI ACNGT 3 cut(s) 40, 241, 300
TaiI ACGT 4 cut(s) 120, 126, 165, 255
TaqI TCGA 3 cut(s) 114, 189, 305
TauI GCSGC 1 cut(s) 53
TscAI CASTG 1 cut(s) 43
TseI GCWGC 3 cut(s) 62, 145, 322
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 2 cut(s) 68, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.