Rh3BG230400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012142
Physical Location & Seq
Forward (+)
21250007 .. 21251724
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG230400.1

Sequence Viewer

Length: 576 bp
ATGAATGGCGGTCTCAGCAAGCTTGGGACTGCACTCACTCTAGTGTTTGCAGTCTTTCTTCTTGTAGGTCTTGTAGGCCAGATCTTCTACATCCTCTGGCGCCGGAGGAAGCTCCATAACCGGAGCCTCCCATACGAGACCGATTCAGTTCTCCCAGTGGACTCGGCCTCATCACACTGTAGCGGGCTTTTCAGTTTCTTCCTGTGCTGGAAAAACCAATCTCGCATCGAACCTCAAGAAGCTCGTCACAACGTCCCACCTACAAATCGAAACGAATTACAGGAGCTGGAGGACATCATCAAGTGGCAGGCACTGTACGGATCGTCGAGGCTTTTGTTCACTATAGAGGAGGGAGAGAGAGAGGGCTTGGACTCCGAGACGACGTATTCTTCATGTGCAGAGAAAGAGGTAGTGAAGACGACGACAAAGGTGTACTTGGAAGAGTGTTATGGGGAACCAGATGTGGCGGTGACTATTGTGAATATAGAGATGGACGAGGCGTTTACGACGCCGTTGGAGACTCCTTGTGCTTCGCCGCCGTACTATACGCCGTCGCCTTCTCCTACTCGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.56

Weight (kDa)

4.91

Isoelectric Point (pI)

68.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11640 AT3G11640 AT3G52480
fragaria_vesca FvH4_6g20110
malus_domestica MD14G1037100.v1.1
prunus_persica Prupe.2G218900_v2.0.a1 Prupe.7G097300_v2.0.a1
pyrus_communis pycom12g03290 pycom14g03240
rosa_chinensis RchiOBHm_Chr3g0475571
rosa_laevigata RLG00000023833
rosa_multiflora Rmu_sc0000539.1_g000027
rosa_roxburghii Rroxscaffold_6G00406140
rosa_rugosa Rorug03G0150400
rosa_samantha Rh3AG200000 Rh3BG230400 Rh3CG224700 Rh3DG225400
rosa_wichuraiana Rw3G018140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 99
AciI CCGC 4 cut(s) 9, 183, 467, 536
AclWI GGATC 1 cut(s) 328
AcyI GRCGYC 2 cut(s) 100, 509
AfaI GTAC 3 cut(s) 317, 434, 542
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 4 cut(s) 22, 112, 242, 286
AluI AGCT 4 cut(s) 22, 112, 242, 286
Alw26I GTCTC 4 cut(s) 17, 131, 371, 512
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 2 cut(s) 286, 313
AoxI GGCC 2 cut(s) 76, 165
AspLEI GCGC 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 481
BanI GGYRCC 1 cut(s) 99
BauI CACGAG 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 422
BccI CCATC 1 cut(s) 484
BceAI ACGGC 3 cut(s) 496, 523, 535
BcoDI GTCTC 4 cut(s) 17, 131, 371, 512
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 2 cut(s) 178, 342
BfoI RGCGCY 1 cut(s) 103
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
BmiI GGNNCC 3 cut(s) 101, 125, 456
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 422
BpmI CTGGAG 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 219
BsaHI GRCGYC 2 cut(s) 100, 509
BsaI GGTCTC 2 cut(s) 17, 131
BsaWI WCCGGW 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 362
BsgI GTGCAG 2 cut(s) 15, 417
BshFI GGCC 2 cut(s) 78, 167
BshNI GGYRCC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 103, 121
BslFI GGGAC 2 cut(s) 40, 239
BsmAI GTCTC 4 cut(s) 17, 131, 371, 512
BsmBI CGTCTC 1 cut(s) 371
BsmFI GGGAC 2 cut(s) 40, 239
BsnI GGCC 2 cut(s) 78, 167
Bso31I GGTCTC 2 cut(s) 17, 131
Bsp143I GATC 2 cut(s) 81, 320
BspACI CCGC 4 cut(s) 9, 183, 467, 536
BspANI GGCC 2 cut(s) 78, 167
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 101, 125, 456
BspPI GGATC 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 99
BspTNI GGTCTC 2 cut(s) 17, 131
BsrI ACTGG 1 cut(s) 155
BssMI GATC 2 cut(s) 81, 320
BssNI GRCGYC 2 cut(s) 100, 509
BssSI CACGAG 1 cut(s) 567
Bst2BI CACGAG 1 cut(s) 567
Bst4CI ACNGT 2 cut(s) 179, 315
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 2 cut(s) 100, 509
BstC8I GCNNGC 3 cut(s) 20, 185, 309
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 2 cut(s) 84, 323
BstMAI GTCTC 4 cut(s) 17, 131, 371, 512
BstMBI GATC 2 cut(s) 81, 320
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstSFI CTRYAG 2 cut(s) 178, 342
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 2 cut(s) 78, 167
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 3 cut(s) 162, 175, 311
Cac8I GCNNGC 3 cut(s) 20, 185, 309
CaiI CAGNNNCTG 2 cut(s) 286, 313
CfoI GCGC 1 cut(s) 102
CseI GACGC 1 cut(s) 517
Csp6I GTAC 3 cut(s) 316, 433, 541
CviAII CATG 1 cut(s) 393
CviQI GTAC 3 cut(s) 316, 433, 541
DdeI CTNAG 1 cut(s) 14
DinI GGCGCC 1 cut(s) 101
DpnI GATC 2 cut(s) 83, 322
DpnII GATC 2 cut(s) 81, 320
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Eco31I GGTCTC 2 cut(s) 17, 131
EgeI GGCGCC 1 cut(s) 101
EheI GGCGCC 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 371
FaeI CATG 1 cut(s) 396
FaiI YATR 7 cut(s) 117, 133, 344, 394, 450, 485, 546
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 2 cut(s) 40, 239
FatI CATG 1 cut(s) 392
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 536
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 536
GsuI CTGGAG 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 2 cut(s) 78, 167
HapII CCGG 2 cut(s) 103, 121
HgaI GACGC 1 cut(s) 517
HhaI GCGC 1 cut(s) 102
Hin1I GRCGYC 2 cut(s) 100, 509
Hin1II CATG 1 cut(s) 396
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 4 cut(s) 143, 161, 371, 520
HpaII CCGG 2 cut(s) 103, 121
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 4 cut(s) 160, 339, 433, 504
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 2 cut(s) 236, 569
Hpy8I GTNNAC 4 cut(s) 160, 339, 433, 504
Hpy99I CGWCG 5 cut(s) 328, 385, 424, 511, 556
HpyAV CCTTC 1 cut(s) 567
HpyCH4III ACNGT 2 cut(s) 179, 315
HpyCH4IV ACGT 2 cut(s) 252, 383
HpyCH4V TGCA 3 cut(s) 32, 50, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 2 cut(s) 252, 383
Hsp92I GRCGYC 2 cut(s) 100, 509
Hsp92II CATG 1 cut(s) 396
HspAI GCGC 1 cut(s) 100
KasI GGCGCC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 81, 320
LmnI GCTCC 3 cut(s) 117, 123, 283
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 252, 383
MaeIII GTNAC 2 cut(s) 245, 469
MalI GATC 2 cut(s) 83, 322
MboI GATC 2 cut(s) 81, 320
MboII GAAGA 6 cut(s) 50, 76, 190, 381, 427, 452
MflI RGATCY 1 cut(s) 81
MluCI AATT 1 cut(s) 275
Mly113I GGCGCC 1 cut(s) 100
MlyI GAGTC 3 cut(s) 155, 365, 514
MmeI TCCRAC 1 cut(s) 495
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 2 cut(s) 103, 121
MwoI GCNNNNNNNGC 1 cut(s) 15
NarI GGCGCC 1 cut(s) 100
NdeII GATC 2 cut(s) 81, 320
NlaIII CATG 1 cut(s) 396
NlaIV GGNNCC 3 cut(s) 101, 125, 456
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 2 cut(s) 245, 469
OliI CACNNNNGTG 1 cut(s) 41
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 537
PleI GAGTC 3 cut(s) 155, 365, 514
PluTI GGCGCC 1 cut(s) 103
PpsI GAGTC 3 cut(s) 155, 365, 514
PspN4I GGNNCC 3 cut(s) 101, 125, 456
PstNI CAGNNNCTG 2 cut(s) 286, 313
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 3 cut(s) 317, 434, 542
RsaNI GTAC 3 cut(s) 316, 433, 541
RseI CAYNNNNRTG 1 cut(s) 41
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 2 cut(s) 81, 320
SchI GAGTC 3 cut(s) 155, 365, 514
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 2 cut(s) 178, 342
SfoI GGCGCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 1 cut(s) 275
SsiI CCGC 4 cut(s) 9, 183, 467, 536
SspDI GGCGCC 1 cut(s) 99
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 179, 315
TaiI ACGT 2 cut(s) 255, 386
TaqI TCGA 3 cut(s) 228, 268, 326
TaqII GACCGA 1 cut(s) 155
TasI AATT 1 cut(s) 275
TatI WGTACW 1 cut(s) 432
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 3 cut(s) 162, 182, 318
TseFI GTSAC 2 cut(s) 245, 469
Tsp45I GTSAC 2 cut(s) 245, 469
TspDTI ATGAA 2 cut(s) 17, 381
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 3 cut(s) 162, 182, 318
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.