pycom14g03240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0012142
Physical Location & Seq
Forward (+)
2556105 .. 2557319
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g03240.4

Sequence Viewer

Length: 1044 bp
ATGCAAAGTCCAAATCCTCACTCCTTCGACTTCCTCGCCATCACACACTCACTTCCTTTACATTCTGGCCACATTTCTTCTCGCCCCCCTCCACCCACATTTCCAAGAAAAAACATCATTTTCCTTCTCACCATTCGTCCACCGGCAACCTTCTCAACCAAAACCTCCATCAACCCATCAAACAGTCAAAACCCCTTCCTCTCTCCCCACATTTTCCCGGTACAACCTACTGAGCCATTTCCCCAAAGACCTTTAAGAGACATACACACACACACGTACGGACACATGAATGGTCGTCTTAGCAAGCTCGGGACTGCGCTCACTGTAGTGTTTGCGGTCACTCTCGCTGCCCTCGTAGCGCAGCTCTTCTTCCTCCTCTGGCGGCGAAGGAAGTCCCGGTTTCCGACCCGCATCGGGCCCCACGAAGCTCATCATAGCAACCAACCACCTAGCTCACTGCACCGCAACATTGACGTGGACGTGGACGAGGTGTTCAAGTGGCAGCAGGGACTGTACGGCGTGTCGTCGAGGGTGTTGTTCACGATCGCGGAGGAGGAAGAGAGAGAGGGTCTGGACTCGGAGACGCCTACAACGACGTATTCATCTTGTGCGGAGAAAGAGACGACGACGGCGACGACGGTGGTACTGGATGTAGCTGTGACTGTGATAGTAGAGGTGGAGGAGGAAACGCCGCCGTTCACGACTCCTTGTGATTCGCCACCGTACTATACTCCTTCGCCTTCTCCTAGTCGTGATTTTGTACCGAAGTTGGATTGTCGGGTCAAAGCAGGATCGGGTTTGGCAGTCCAATACATTGATGGCTGTTGCTTTTCGTATAACAATGGCAGGAAAGCAAAATTGGGGAACTGCATATGCAGATTTTATAAAGACTTGGTACTAGACGTTGGAGTAAATGTGTGTAGTTTCTGTGGCACCTCATTTCAACTTTACTCTTTTGTATCTTTTTCTTCTATTTTTATGTGGAAACTGTTAACTACGCTTCAAAAAACATCTTTCTTAAAGAGAGTTTGCAATGTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

38.88

Weight (kDa)

8.65

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11640 AT3G11640 AT3G52480
fragaria_vesca FvH4_6g20110
malus_domestica MD14G1037100.v1.1
prunus_persica Prupe.2G218900_v2.0.a1 Prupe.7G097300_v2.0.a1
pyrus_communis pycom12g03290 pycom14g03240
rosa_chinensis RchiOBHm_Chr3g0475571
rosa_laevigata RLG00000023833
rosa_multiflora Rmu_sc0000539.1_g000027
rosa_roxburghii Rroxscaffold_6G00406140
rosa_rugosa Rorug03G0150400
rosa_samantha Rh3AG200000 Rh3BG230400 Rh3CG224700 Rh3DG225400
rosa_wichuraiana Rw3G018140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 885
AccB1I GGYRCC 1 cut(s) 932
AccII CGCG 1 cut(s) 548
AciI CCGC 7 cut(s) 335, 382, 409, 463, 548, 611, 692
AclWI GGATC 1 cut(s) 799
AcoI YGGCCR 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 584
AfaI GTAC 7 cut(s) 222, 278, 515, 645, 725, 762, 897
AfiI CCNNNNNNNGG 1 cut(s) 414
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 3 cut(s) 496, 944, 1004
AjiI CACGTC 2 cut(s) 475, 481
AjuI GAANNNNNNNTTGG 2 cut(s) 842, 874
AleI CACNNNNGTG 1 cut(s) 326
AloI GAACNNNNNNTCC 2 cut(s) 476, 508
AluBI AGCT 5 cut(s) 307, 364, 428, 453, 656
AluI AGCT 5 cut(s) 307, 364, 428, 453, 656
Alw26I GTCTC 3 cut(s) 252, 575, 614
AlwI GGATC 1 cut(s) 799
AlwNI CAGNNNCTG 1 cut(s) 511
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 2 cut(s) 67, 416
ApaI GGGCCC 1 cut(s) 420
ApeKI GCWGC 3 cut(s) 347, 361, 502
AspLEI GCGC 2 cut(s) 319, 361
AspS9I GGNCC 2 cut(s) 416, 417
AsuC2I CCSGG 2 cut(s) 218, 397
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 420
BalI TGGCCA 1 cut(s) 69
BanI GGYRCC 1 cut(s) 932
BanII GRGCYC 1 cut(s) 420
BbvI GCAGC 3 cut(s) 334, 373, 514
BccI CCATC 4 cut(s) 47, 176, 184, 812
BceAI ACGGC 3 cut(s) 532, 645, 679
BcnI CCSGG 2 cut(s) 218, 397
BcoDI GTCTC 3 cut(s) 252, 575, 614
BfaI CTAG 3 cut(s) 450, 747, 899
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 5 cut(s) 348, 362, 383, 503, 692
BlsI GCNGC 5 cut(s) 349, 363, 384, 504, 693
Bme1390I CCNGG 2 cut(s) 218, 397
BmeT110I CYCGRG 1 cut(s) 308
BmgBI CACGTC 2 cut(s) 475, 481
BmgT120I GGNCC 2 cut(s) 416, 417
BmiI GGNNCC 3 cut(s) 418, 419, 934
BmrFI CCNGG 2 cut(s) 218, 397
BmsI GCATC 1 cut(s) 420
BpuMI CCSGG 2 cut(s) 218, 397
BsaAI YACGTR 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 584
BsaXI ACNNNNNCTCC 2 cut(s) 900, 930
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 651
Bse3DI GCAATG 1 cut(s) 1039
BseGI GGATG 1 cut(s) 655
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMI GCAATG 1 cut(s) 1039
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 651
BseRI GAGGAG 3 cut(s) 365, 566, 695
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 3 cut(s) 334, 373, 514
BsgI GTGCAG 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 546
BshFI GGCC 2 cut(s) 69, 418
BshNI GGYRCC 1 cut(s) 932
BsiEI CGRYCG 1 cut(s) 546
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 3 cut(s) 143, 218, 397
BsiWI CGTACG 1 cut(s) 276
BslFI GGGAC 3 cut(s) 325, 379, 522
BslI CCNNNNNNNGG 1 cut(s) 414
BsmAI GTCTC 3 cut(s) 252, 575, 614
BsmBI CGTCTC 2 cut(s) 575, 614
BsmFI GGGAC 3 cut(s) 325, 379, 522
BsnI GGCC 2 cut(s) 69, 418
BsoBI CYCGRG 1 cut(s) 308
Bsp120I GGGCCC 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 2 cut(s) 543, 791
BspACI CCGC 7 cut(s) 335, 382, 409, 463, 548, 611, 692
BspANI GGCC 2 cut(s) 69, 418
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 548
BspLI GGNNCC 3 cut(s) 418, 419, 934
BspPI GGATC 1 cut(s) 799
BspQI GCTCTTC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 932
BsrDI GCAATG 1 cut(s) 1039
BsrFI RCCGGY 1 cut(s) 142
BsrI ACTGG 1 cut(s) 651
BssAI RCCGGY 1 cut(s) 142
BssMI GATC 2 cut(s) 543, 791
BssNI GRCGYC 1 cut(s) 584
Bst4CI ACNGT 7 cut(s) 185, 325, 513, 640, 664, 723, 990
Bst6I CTCTTC 2 cut(s) 371, 552
BstACI GRCGYC 1 cut(s) 584
BstBAI YACGTR 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 231, 299
BstF5I GGATG 1 cut(s) 655
BstFNI CGCG 1 cut(s) 548
BstHHI GCGC 2 cut(s) 319, 361
BstKTI GATC 2 cut(s) 546, 794
BstMAI GTCTC 3 cut(s) 252, 575, 614
BstMBI GATC 2 cut(s) 543, 791
BstMCI CGRYCG 1 cut(s) 546
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstSCI CCNGG 2 cut(s) 216, 395
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 1 cut(s) 548
BstV1I GCAGC 3 cut(s) 334, 373, 514
BsuRI GGCC 2 cut(s) 69, 418
BtrI CACGTC 2 cut(s) 475, 481
BtsCI GGATG 1 cut(s) 655
BtsI GCAGTG 1 cut(s) 455
BtsIMutI CAGTG 2 cut(s) 321, 455
Cac8I GCNNGC 1 cut(s) 305
CaiI CAGNNNCTG 1 cut(s) 511
CfoI GCGC 2 cut(s) 319, 361
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 416, 417
CseI GACGC 1 cut(s) 592
Csp6I GTAC 7 cut(s) 221, 277, 514, 644, 724, 761, 896
CviAII CATG 1 cut(s) 286
CviJI RGCY 9 cut(s) 69, 235, 307, 364, 418, 428, 453, 656, 822
CviKI_1 RGCY 9 cut(s) 69, 235, 307, 364, 418, 428, 453, 656, 822
CviQI GTAC 7 cut(s) 221, 277, 514, 644, 724, 761, 896
DdeI CTNAG 2 cut(s) 231, 299
DpnI GATC 2 cut(s) 545, 793
DpnII GATC 2 cut(s) 543, 791
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 371, 552
EarI CTCTTC 2 cut(s) 371, 552
Eco24I GRGCYC 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 420
Esp3I CGTCTC 2 cut(s) 575, 614
FaeI CATG 1 cut(s) 289
FaiI YATR 9 cut(s) 263, 287, 435, 729, 837, 872, 874, 885, 980
FaqI GGGAC 3 cut(s) 325, 379, 522
FatI CATG 1 cut(s) 285
FauI CCCGC 1 cut(s) 416
FauNDI CATATG 1 cut(s) 872
Fnu4HI GCNGC 5 cut(s) 348, 362, 383, 503, 692
FokI GGATG 1 cut(s) 662
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 5 cut(s) 348, 362, 383, 503, 692
FspBI CTAG 3 cut(s) 450, 747, 899
GlaI GCGC 2 cut(s) 318, 360
GluI GCNGC 5 cut(s) 348, 362, 383, 503, 692
HaeIII GGCC 2 cut(s) 69, 418
HapII CCGG 3 cut(s) 143, 218, 397
HgaI GACGC 1 cut(s) 592
HhaI GCGC 2 cut(s) 319, 361
Hin1I GRCGYC 1 cut(s) 584
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 2 cut(s) 317, 359
HinP1I GCGC 2 cut(s) 317, 359
HincII GTYRAC 1 cut(s) 993
HindII GTYRAC 1 cut(s) 993
HinfI GANTC 3 cut(s) 575, 703, 713
HpaI GTTAAC 1 cut(s) 993
HpaII CCGG 3 cut(s) 143, 218, 397
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 6 cut(s) 140, 478, 484, 540, 699, 993
Hpy188I TCNGA 2 cut(s) 405, 580
Hpy188III TCNNGA 5 cut(s) 310, 541, 572, 700, 752
Hpy8I GTNNAC 6 cut(s) 140, 478, 484, 540, 699, 993
Hpy99I CGWCG 6 cut(s) 529, 598, 628, 631, 637, 640
HpyAV CCTTC 7 cut(s) 34, 134, 160, 205, 381, 744, 750
HpyCH4III ACNGT 7 cut(s) 185, 325, 513, 640, 664, 723, 990
HpyCH4IV ACGT 5 cut(s) 275, 474, 480, 596, 903
HpyCH4V TGCA 5 cut(s) 4, 460, 870, 876, 1032
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 231, 299
HpySE526I ACGT 5 cut(s) 275, 474, 480, 596, 903
Hsp92I GRCGYC 1 cut(s) 584
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 2 cut(s) 317, 359
KspAI GTTAAC 1 cut(s) 993
Kzo9I GATC 2 cut(s) 543, 791
LguI GCTCTTC 1 cut(s) 371
Lsp1109I GCAGC 3 cut(s) 334, 373, 514
LweI GCATC 1 cut(s) 420
MaeI CTAG 3 cut(s) 450, 747, 899
MaeII ACGT 5 cut(s) 275, 474, 480, 596, 903
MaeIII GTNAC 2 cut(s) 337, 658
MalI GATC 2 cut(s) 545, 793
MboI GATC 2 cut(s) 543, 791
MboII GAAGA 5 cut(s) 69, 358, 361, 569, 960
MhlI GDGCHC 1 cut(s) 420
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 1 cut(s) 857
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 2 cut(s) 569, 697
MmeI TCCRAC 3 cut(s) 428, 750, 886
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MseI TTAA 3 cut(s) 254, 992, 1019
MslI CAYNNNNRTG 3 cut(s) 288, 326, 473
Msp20I TGGCCA 1 cut(s) 69
MspI CCGG 3 cut(s) 143, 218, 397
MspR9I CCNGG 2 cut(s) 218, 397
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 1 cut(s) 356
NciI CCSGG 2 cut(s) 218, 397
NdeI CATATG 1 cut(s) 872
NdeII GATC 2 cut(s) 543, 791
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 3 cut(s) 418, 419, 934
NmuCI GTSAC 2 cut(s) 337, 658
OliI CACNNNNGTG 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 371
PcsI WCGNNNNNNNCGW 5 cut(s) 351, 420, 590, 629, 632
PfeI GAWTC 1 cut(s) 713
Pfl23II CGTACG 1 cut(s) 276
PkrI GCNGC 5 cut(s) 349, 363, 384, 504, 693
Ple19I CGATCG 1 cut(s) 546
PleI GAGTC 2 cut(s) 569, 697
PpsI GAGTC 2 cut(s) 569, 697
Ppu21I YACGTR 1 cut(s) 276
PsiI TTATAA 1 cut(s) 885
PspLI CGTACG 1 cut(s) 276
PspN4I GGNNCC 3 cut(s) 418, 419, 934
PspOMI GGGCCC 1 cut(s) 416
PspPI GGNCC 2 cut(s) 416, 417
PstNI CAGNNNCTG 1 cut(s) 511
PvuI CGATCG 1 cut(s) 546
RsaI GTAC 7 cut(s) 222, 278, 515, 645, 725, 762, 897
RsaNI GTAC 7 cut(s) 221, 277, 514, 644, 724, 761, 896
RseI CAYNNNNRTG 3 cut(s) 288, 326, 473
SapI GCTCTTC 1 cut(s) 371
SaqAI TTAA 3 cut(s) 254, 992, 1019
SatI GCNGC 5 cut(s) 348, 362, 383, 503, 692
Sau3AI GATC 2 cut(s) 543, 791
Sau96I GGNCC 2 cut(s) 416, 417
SchI GAGTC 2 cut(s) 569, 697
ScrFI CCNGG 2 cut(s) 218, 397
SduI GDGCHC 1 cut(s) 420
SfaNI GCATC 1 cut(s) 420
SfcI CTRYAG 1 cut(s) 324
SmiMI CAYNNNNRTG 3 cut(s) 288, 326, 473
Sse9I AATT 1 cut(s) 857
SsiI CCGC 7 cut(s) 335, 382, 409, 463, 548, 611, 692
SspMI CTAG 3 cut(s) 450, 747, 899
StyD4I CCNGG 2 cut(s) 216, 395
TaaI ACNGT 7 cut(s) 185, 325, 513, 640, 664, 723, 990
TaiI ACGT 5 cut(s) 278, 477, 483, 599, 906
TaqI TCGA 2 cut(s) 27, 527
TasI AATT 1 cut(s) 857
TauI GCSGC 2 cut(s) 385, 694
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 3 cut(s) 254, 992, 1019
Tru9I TTAA 3 cut(s) 254, 992, 1019
TscAI CASTG 2 cut(s) 328, 462
TseFI GTSAC 2 cut(s) 337, 658
TseI GCWGC 3 cut(s) 347, 361, 502
Tsp45I GTSAC 2 cut(s) 337, 658
TspDTI ATGAA 2 cut(s) 302, 591
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 2 cut(s) 328, 462
XcmI CCANNNNNNNNNTGG 1 cut(s) 815
XspI CTAG 3 cut(s) 450, 747, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.