Rroxscaffold_6G00406140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012142
Physical Location & Seq
Reverse (-)
28571496 .. 28572767
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406140.1

Sequence Viewer

Length: 570 bp
ATGAATGGTGGTCTCAGCAAGCTTGGGACTGCACTCACTCTAGTGATTGCAGTCTTTCTTCTTGTAGGTCTTGTAGGCCAGATCTTCTACATCCTCTGGCACCGGAGGAAGCTCCATAACCGGAGCCTCCCAGACGACACCGAGTCAGTTCTCCCAGTGGACTCGGCCTCATCACACTCTAGCGGGCTTTTCAGTTTCTTCCTGTGCTGGAAAAACAAATCTCGCATCGAACCTCAAGAAGCTCGTCACAACGTCCCAACTACAAATCGAAACGAATTACAGGAGCTGGAGGACATCATCAAGTGGCAGGCACTGTACGGATCGTCGAGGCTTTTGTTCACTATAGAGGAGGGAGAGAGAGGGCTTGGACTCCGAGACGACGTATTCTTCATGTGTAGAGAAAGAGGTAGTGAAGACGACGACAAAGGTGTACTTGGAAGAGTGTTATGGGGAACCAGATGTGGCGGTGACTGTTGTGAATATAGAGATGGACGAGGCGTTTACGACGCCGTTGGAGACTCCTTGTGCTTCGCCGCCGTATTATACGCCGTCGCCTTCCCCTACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.19

Weight (kDa)

5.59

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11640 AT3G11640 AT3G52480
fragaria_vesca FvH4_6g20110
malus_domestica MD14G1037100.v1.1
prunus_persica Prupe.2G218900_v2.0.a1 Prupe.7G097300_v2.0.a1
pyrus_communis pycom12g03290 pycom14g03240
rosa_chinensis RchiOBHm_Chr3g0475571
rosa_laevigata RLG00000023833
rosa_multiflora Rmu_sc0000539.1_g000027
rosa_roxburghii Rroxscaffold_6G00406140
rosa_rugosa Rorug03G0150400
rosa_samantha Rh3AG200000 Rh3BG230400 Rh3CG224700 Rh3DG225400
rosa_wichuraiana Rw3G018140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 99
AciI CCGC 3 cut(s) 183, 465, 534
AclWI GGATC 1 cut(s) 328
AcyI GRCGYC 1 cut(s) 507
AfaI GTAC 2 cut(s) 317, 432
AhdI GACNNNNNGTC 1 cut(s) 142
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 4 cut(s) 22, 112, 242, 286
AluI AGCT 4 cut(s) 22, 112, 242, 286
Alw26I GTCTC 3 cut(s) 17, 369, 510
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 2 cut(s) 286, 313
AoxI GGCC 2 cut(s) 76, 165
AsuHPI GGTGA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 99
BauI CACGAG 1 cut(s) 565
BbsI GAAGAC 1 cut(s) 420
BccI CCATC 1 cut(s) 482
BceAI ACGGC 3 cut(s) 494, 521, 533
BcoDI GTCTC 3 cut(s) 17, 369, 510
BfaI CTAG 2 cut(s) 41, 180
BfmI CTRYAG 1 cut(s) 342
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 535
BmeRI GACNNNNNGTC 1 cut(s) 142
BmiI GGNNCC 3 cut(s) 101, 125, 454
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 420
BpmI CTGGAG 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 17
BsaWI WCCGGW 2 cut(s) 102, 120
Bse1I ACTGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 15
BshFI GGCC 2 cut(s) 78, 167
BshNI GGYRCC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 103, 121
BslFI GGGAC 2 cut(s) 40, 239
BsmAI GTCTC 3 cut(s) 17, 369, 510
BsmBI CGTCTC 1 cut(s) 369
BsmFI GGGAC 2 cut(s) 40, 239
BsnI GGCC 2 cut(s) 78, 167
Bso31I GGTCTC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 81, 320
BspACI CCGC 3 cut(s) 183, 465, 534
BspANI GGCC 2 cut(s) 78, 167
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 101, 125, 454
BspPI GGATC 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 155
BssMI GATC 2 cut(s) 81, 320
BssNI GRCGYC 1 cut(s) 507
BssSI CACGAG 1 cut(s) 565
Bst2BI CACGAG 1 cut(s) 565
Bst4CI ACNGT 2 cut(s) 315, 473
Bst6I CTCTTC 1 cut(s) 433
BstACI GRCGYC 1 cut(s) 507
BstC8I GCNNGC 3 cut(s) 20, 185, 309
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 2 cut(s) 84, 323
BstMAI GTCTC 3 cut(s) 17, 369, 510
BstMBI GATC 2 cut(s) 81, 320
BstSFI CTRYAG 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 2 cut(s) 78, 167
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 162, 311
Cac8I GCNNGC 3 cut(s) 20, 185, 309
CaiI CAGNNNCTG 2 cut(s) 286, 313
CseI GACGC 1 cut(s) 515
Csp6I GTAC 2 cut(s) 316, 431
CviAII CATG 1 cut(s) 391
CviQI GTAC 2 cut(s) 316, 431
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 83, 322
DpnII GATC 2 cut(s) 81, 320
DriI GACNNNNNGTC 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 433
Eam1105I GACNNNNNGTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 369
FaeI CATG 1 cut(s) 394
FaiI YATR 6 cut(s) 117, 344, 392, 448, 483, 544
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 2 cut(s) 40, 239
FatI CATG 1 cut(s) 390
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 2 cut(s) 41, 180
GluI GCNGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 308
HaeIII GGCC 2 cut(s) 78, 167
HapII CCGG 2 cut(s) 103, 121
HgaI GACGC 1 cut(s) 515
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 4 cut(s) 143, 161, 369, 518
HpaII CCGG 2 cut(s) 103, 121
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 4 cut(s) 160, 339, 431, 502
Hpy188I TCNGA 1 cut(s) 374
Hpy188III TCNNGA 2 cut(s) 236, 567
Hpy8I GTNNAC 4 cut(s) 160, 339, 431, 502
Hpy99I CGWCG 5 cut(s) 328, 383, 422, 509, 554
HpyAV CCTTC 1 cut(s) 565
HpyCH4III ACNGT 2 cut(s) 315, 473
HpyCH4IV ACGT 2 cut(s) 252, 381
HpyCH4V TGCA 2 cut(s) 32, 50
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 2 cut(s) 252, 381
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 1 cut(s) 394
Kzo9I GATC 2 cut(s) 81, 320
LmnI GCTCC 3 cut(s) 117, 123, 283
LweI GCATC 1 cut(s) 234
MaeI CTAG 2 cut(s) 41, 180
MaeII ACGT 2 cut(s) 252, 381
MaeIII GTNAC 2 cut(s) 245, 467
MalI GATC 2 cut(s) 83, 322
MboI GATC 2 cut(s) 81, 320
MboII GAAGA 6 cut(s) 50, 76, 190, 379, 425, 450
MflI RGATCY 1 cut(s) 81
MluCI AATT 1 cut(s) 275
MlyI GAGTC 4 cut(s) 152, 155, 363, 512
MmeI TCCRAC 1 cut(s) 493
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 2 cut(s) 103, 121
NdeII GATC 2 cut(s) 81, 320
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 3 cut(s) 101, 125, 454
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 2 cut(s) 245, 467
OliI CACNNNNGTG 1 cut(s) 41
PkrI GCNGC 1 cut(s) 535
PleI GAGTC 4 cut(s) 151, 155, 363, 512
PpsI GAGTC 4 cut(s) 151, 155, 363, 512
PspN4I GGNNCC 3 cut(s) 101, 125, 454
PstNI CAGNNNCTG 2 cut(s) 286, 313
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 2 cut(s) 317, 432
RsaNI GTAC 2 cut(s) 316, 431
RseI CAYNNNNRTG 1 cut(s) 41
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 2 cut(s) 81, 320
SchI GAGTC 4 cut(s) 152, 155, 363, 512
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 1 cut(s) 275
SsiI CCGC 3 cut(s) 183, 465, 534
SspMI CTAG 2 cut(s) 41, 180
TaaI ACNGT 2 cut(s) 315, 473
TaiI ACGT 2 cut(s) 255, 384
TaqI TCGA 3 cut(s) 228, 268, 326
TasI AATT 1 cut(s) 275
TatI WGTACW 1 cut(s) 430
TauI GCSGC 1 cut(s) 536
TscAI CASTG 2 cut(s) 162, 318
TseFI GTSAC 2 cut(s) 245, 467
Tsp45I GTSAC 2 cut(s) 245, 467
TspDTI ATGAA 2 cut(s) 17, 379
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 2 cut(s) 162, 318
XspI CTAG 2 cut(s) 41, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.