RLG00000023833

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012142
Physical Location & Seq
Reverse (-)
28886228 .. 28887233
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023833

Sequence Viewer

Length: 867 bp
ATGATAATTAGCCCCACACCCAACCGCCCAATTTATTTCAAATTTAAATGCAAGTCCCAGTCACAATCACAGTCACAGTCACCAGACTCCTTCGACCTCCACGCCATCACACCACACAAGGTTCTCCTCCTCCCTTCAAATCCTGGCCACATTTCTCCTTCTTCTTTCACCTACATTTCCAAGAAAAAACATCACTCTCCTTCCATCTTCTTCTGTAACCTTTTCATGCCTCACCGGCAACCTGCTAGACCACTTACCCCAACCTCCTCAAATTCATCTTCCCCCGGTTCCCCACCCACATTTTCCCGCAAGCTTGGGACTGCACTCACTCTAGTGTTTGCAGTCTTTCTTCTTGTAGGTCTTGTAGGCCAGATCTTCTACATCCTCTGGCGCCGGAGGAAGCTCCATAACCGGAGCCTCCCAGACGACACCGAGTCAGTTCTCCCAGTGGACTCGGCCTCATCACACTCTAGCGGGCTTTTCAGTTTCTTACTGTGCTGGAAAAACAAATCTCGCATCGAACCTCAAGAAGCTCGTCACAACGTCCCACCTCCAAATCGAAACGAATTACAGGAGCTGGAGGACATCATCAAGTGGCAGGCACTGTACGGATCGTCGAGGCTTTTGTTCACTATAGAGGAGGGAGAGAGAGAGGGCTTGGACTCCGAGACGACGTATTCTTCATGCGCAGAGAAAGAGGTAGTGAAGACGACGACGAAGGTGTACTTGGAAGAGTGTTATGGGGAACCAGATGTGGCGGTGACTGTTGTGAATATCGAGATGGACGAGGCGTTTACGACGCCGTTGGAGACTCCTTGTGCTTCGCCGCCGTACTATACGCCGTCGCCTTCTCCTACTCGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

32.35

Weight (kDa)

7.11

Isoelectric Point (pI)

82.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11640 AT3G11640 AT3G52480
fragaria_vesca FvH4_6g20110
malus_domestica MD14G1037100.v1.1
prunus_persica Prupe.2G218900_v2.0.a1 Prupe.7G097300_v2.0.a1
pyrus_communis pycom12g03290 pycom14g03240
rosa_chinensis RchiOBHm_Chr3g0475571
rosa_laevigata RLG00000023833
rosa_multiflora Rmu_sc0000539.1_g000027
rosa_roxburghii Rroxscaffold_6G00406140
rosa_rugosa Rorug03G0150400
rosa_samantha Rh3AG200000 Rh3BG230400 Rh3CG224700 Rh3DG225400
rosa_wichuraiana Rw3G018140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 688
Acc36I ACCTGC 1 cut(s) 250
AccB1I GGYRCC 1 cut(s) 390
AciI CCGC 5 cut(s) 25, 307, 474, 758, 827
AclWI GGATC 1 cut(s) 619
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 2 cut(s) 41, 271
AcyI GRCGYC 2 cut(s) 391, 800
AfaI GTAC 3 cut(s) 608, 725, 833
AgsI TTSAA 2 cut(s) 40, 138
AhdI GACNNNNNGTC 1 cut(s) 433
AjnI CCWGG 1 cut(s) 142
AjuI GAANNNNNNNTTGG 2 cut(s) 710, 742
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 4 cut(s) 313, 403, 533, 577
AluI AGCT 4 cut(s) 313, 403, 533, 577
Alw26I GTCTC 2 cut(s) 662, 803
AlwI GGATC 1 cut(s) 619
AlwNI CAGNNNCTG 2 cut(s) 577, 604
AoxI GGCC 3 cut(s) 145, 367, 456
ApoI RAATTY 2 cut(s) 41, 271
AspLEI GCGC 2 cut(s) 393, 689
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 4 cut(s) 72, 160, 224, 772
BalI TGGCCA 1 cut(s) 147
BanI GGYRCC 1 cut(s) 390
BauI CACGAG 1 cut(s) 858
BbsI GAAGAC 1 cut(s) 713
BccI CCATC 3 cut(s) 113, 212, 775
BceAI ACGGC 3 cut(s) 787, 814, 826
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 662, 803
BfaI CTAG 3 cut(s) 246, 332, 471
BfmI CTRYAG 1 cut(s) 633
BfoI RGCGCY 1 cut(s) 394
BfuAI ACCTGC 1 cut(s) 250
BglI GCCNNNNNGGC 1 cut(s) 235
BglII AGATCT 1 cut(s) 372
BisI GCNGC 1 cut(s) 827
BlsI GCNGC 1 cut(s) 828
Bme1390I CCNGG 2 cut(s) 144, 285
BmeRI GACNNNNNGTC 1 cut(s) 433
BmiI GGNNCC 4 cut(s) 289, 392, 416, 747
BmrFI CCNGG 2 cut(s) 144, 285
BmrI ACTGGG 2 cut(s) 52, 440
BmsI GCATC 1 cut(s) 525
BmuI ACTGGG 2 cut(s) 52, 440
BpiI GAAGAC 1 cut(s) 713
BpmI CTGGAG 1 cut(s) 599
BpuEI CTTGAG 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 285
BsaHI GRCGYC 2 cut(s) 391, 800
BsaJI CCNNGG 1 cut(s) 283
BsaWI WCCGGW 1 cut(s) 411
Bse118I RCCGGY 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 58, 446
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 58, 446
BseRI GAGGAG 4 cut(s) 116, 119, 256, 653
BsgI GTGCAG 1 cut(s) 306
BshFI GGCC 3 cut(s) 147, 369, 458
BshNI GGYRCC 1 cut(s) 390
BsiSI CCGG 4 cut(s) 235, 285, 394, 412
BslFI GGGAC 3 cut(s) 40, 331, 530
BsmAI GTCTC 2 cut(s) 662, 803
BsmBI CGTCTC 1 cut(s) 662
BsmFI GGGAC 3 cut(s) 40, 331, 530
BsnI GGCC 3 cut(s) 147, 369, 458
Bsp143I GATC 2 cut(s) 372, 611
BspACI CCGC 5 cut(s) 25, 307, 474, 758, 827
BspANI GGCC 3 cut(s) 147, 369, 458
BspLI GGNNCC 4 cut(s) 289, 392, 416, 747
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 1 cut(s) 619
BspT107I GGYRCC 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 234
BsrI ACTGG 2 cut(s) 58, 446
BssAI RCCGGY 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 2 cut(s) 372, 611
BssNI GRCGYC 2 cut(s) 391, 800
BssSI CACGAG 1 cut(s) 858
Bst2BI CACGAG 1 cut(s) 858
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 5 cut(s) 72, 78, 495, 606, 766
Bst6I CTCTTC 1 cut(s) 726
BstACI GRCGYC 2 cut(s) 391, 800
BstC8I GCNNGC 3 cut(s) 311, 476, 600
BstF5I GGATG 1 cut(s) 381
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 2 cut(s) 393, 689
BstKTI GATC 2 cut(s) 375, 614
BstMAI GTCTC 2 cut(s) 662, 803
BstMBI GATC 2 cut(s) 372, 611
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 142, 283
BstSFI CTRYAG 1 cut(s) 633
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 3 cut(s) 147, 369, 458
BtsCI GGATG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 453, 602
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 3 cut(s) 311, 476, 600
CaiI CAGNNNCTG 2 cut(s) 577, 604
CfoI GCGC 2 cut(s) 393, 689
Cfr10I RCCGGY 1 cut(s) 234
CseI GACGC 1 cut(s) 808
Csp6I GTAC 3 cut(s) 607, 724, 832
CviAII CATG 2 cut(s) 226, 684
CviQI GTAC 3 cut(s) 607, 724, 832
DinI GGCGCC 1 cut(s) 392
DpnI GATC 2 cut(s) 374, 613
DpnII GATC 2 cut(s) 372, 611
DraI TTTAAA 1 cut(s) 46
DriI GACNNNNNGTC 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 726
Eam1105I GACNNNNNGTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 726
EcoRII CCWGG 1 cut(s) 142
EgeI GGCGCC 1 cut(s) 392
EheI GGCGCC 1 cut(s) 392
Esp3I CGTCTC 1 cut(s) 662
FaeI CATG 2 cut(s) 229, 687
FaiI YATR 6 cut(s) 227, 408, 635, 685, 741, 837
FalI AAGNNNNNCTT 2 cut(s) 710, 742
FaqI GGGAC 3 cut(s) 40, 331, 530
FatI CATG 2 cut(s) 225, 683
FauI CCCGC 2 cut(s) 314, 467
Fnu4HI GCNGC 1 cut(s) 827
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 827
FspBI CTAG 3 cut(s) 246, 332, 471
FspI TGCGCA 1 cut(s) 688
GlaI GCGC 2 cut(s) 392, 688
GluI GCNGC 1 cut(s) 827
GsuI CTGGAG 1 cut(s) 599
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 3 cut(s) 147, 369, 458
HapII CCGG 4 cut(s) 235, 285, 394, 412
HgaI GACGC 1 cut(s) 808
HhaI GCGC 2 cut(s) 393, 689
Hin1I GRCGYC 2 cut(s) 391, 800
Hin1II CATG 2 cut(s) 229, 687
Hin6I GCGC 2 cut(s) 391, 687
HinP1I GCGC 2 cut(s) 391, 687
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 5 cut(s) 86, 434, 452, 662, 811
HpaII CCGG 4 cut(s) 235, 285, 394, 412
HphI GGTGA 4 cut(s) 72, 160, 224, 772
Hpy166II GTNNAC 4 cut(s) 451, 630, 724, 795
Hpy188I TCNGA 1 cut(s) 667
Hpy188III TCNNGA 3 cut(s) 527, 778, 860
Hpy8I GTNNAC 4 cut(s) 451, 630, 724, 795
Hpy99I CGWCG 6 cut(s) 619, 676, 715, 718, 802, 847
HpyAV CCTTC 6 cut(s) 100, 144, 168, 210, 712, 858
HpyCH4III ACNGT 5 cut(s) 72, 78, 495, 606, 766
HpyCH4IV ACGT 2 cut(s) 543, 674
HpyCH4V TGCA 3 cut(s) 51, 323, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpySE526I ACGT 2 cut(s) 543, 674
Hsp92I GRCGYC 2 cut(s) 391, 800
Hsp92II CATG 2 cut(s) 229, 687
HspAI GCGC 2 cut(s) 391, 687
KasI GGCGCC 1 cut(s) 390
Kzo9I GATC 2 cut(s) 372, 611
LmnI GCTCC 3 cut(s) 408, 414, 574
LweI GCATC 1 cut(s) 525
MaeI CTAG 3 cut(s) 246, 332, 471
MaeII ACGT 2 cut(s) 543, 674
MaeIII GTNAC 6 cut(s) 60, 72, 78, 215, 536, 760
MalI GATC 2 cut(s) 374, 613
MboI GATC 2 cut(s) 372, 611
MboII GAAGA 9 cut(s) 153, 199, 202, 270, 341, 367, 672, 718, 743
MflI RGATCY 1 cut(s) 372
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 5 cut(s) 6, 30, 41, 271, 566
MluNI TGGCCA 1 cut(s) 147
Mly113I GGCGCC 1 cut(s) 391
MlyI GAGTC 5 cut(s) 80, 443, 446, 656, 805
MmeI TCCRAC 1 cut(s) 786
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 147
MspI CCGG 4 cut(s) 235, 285, 394, 412
MspR9I CCNGG 2 cut(s) 144, 285
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 235
NarI GGCGCC 1 cut(s) 391
NciI CCSGG 1 cut(s) 285
NdeII GATC 2 cut(s) 372, 611
NlaIII CATG 2 cut(s) 229, 687
NlaIV GGNNCC 4 cut(s) 289, 392, 416, 747
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 5 cut(s) 60, 72, 78, 536, 760
NsbI TGCGCA 1 cut(s) 688
OliI CACNNNNGTG 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 783
PkrI GCNGC 1 cut(s) 828
PleI GAGTC 5 cut(s) 80, 442, 446, 656, 805
PluTI GGCGCC 1 cut(s) 394
PpsI GAGTC 5 cut(s) 80, 442, 446, 656, 805
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 4 cut(s) 289, 392, 416, 747
PstNI CAGNNNCTG 2 cut(s) 577, 604
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 3 cut(s) 608, 725, 833
RsaNI GTAC 3 cut(s) 607, 724, 832
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 827
Sau3AI GATC 2 cut(s) 372, 611
SchI GAGTC 5 cut(s) 80, 443, 446, 656, 805
ScrFI CCNGG 2 cut(s) 144, 285
SfaNI GCATC 1 cut(s) 525
SfcI CTRYAG 1 cut(s) 633
SfoI GGCGCC 1 cut(s) 392
SmiI ATTTAAAT 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 5 cut(s) 6, 30, 41, 271, 566
SsiI CCGC 5 cut(s) 25, 307, 474, 758, 827
SspDI GGCGCC 1 cut(s) 390
SspMI CTAG 3 cut(s) 246, 332, 471
StyD4I CCNGG 2 cut(s) 142, 283
SwaI ATTTAAAT 1 cut(s) 46
TaaI ACNGT 5 cut(s) 72, 78, 495, 606, 766
TaiI ACGT 2 cut(s) 546, 677
TaqI TCGA 5 cut(s) 93, 519, 559, 617, 777
TasI AATT 5 cut(s) 6, 30, 41, 271, 566
TatI WGTACW 1 cut(s) 723
TauI GCSGC 1 cut(s) 829
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 453, 609
TseFI GTSAC 5 cut(s) 60, 72, 78, 536, 760
Tsp45I GTSAC 5 cut(s) 60, 72, 78, 536, 760
TspDTI ATGAA 3 cut(s) 214, 264, 672
TspGWI ACGGA 1 cut(s) 624
TspRI CASTG 2 cut(s) 453, 609
XapI RAATTY 2 cut(s) 41, 271
XspI CTAG 3 cut(s) 246, 332, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.