FvH4_6g20110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012142
Physical Location & Seq
Forward (+)
13600223 .. 13601558
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20110.t1

Sequence Viewer

Length: 579 bp
ATGAATGGTGGTCTCAGCAAGCTTGGGACTGCACTCACTCTAGTAATTGCAGTCTCTCTTCTTGTAGGTCTTGTAGGCCAGATCTTCTACATCCTCTGGCGCCGGAAGAAGCTTCGTAACCGGAGCATCCCTCATCACACCGATTCAGTTCTCCCCGGGGACTCGACGTCGTCACAGGCTAGTGGGCTTTTCAGTTTCGTCTTGTGCTGGAAAAACCAATCTCGCATCGAACCTCAGGAAGCTCGTCACGACGTCCCGCCTCCAAATTACCACAACGAGTTACAGGAGCTGGAGGACATGATCAAGTGGCAAGCACTGTACGGGTCGTCGAGGCTCTTGTTCACTATAGAGGAGGGAGAGAGAGAGGGCTTGGACTCGGAGACGACGTATTCTTCATGTGCAGAGAAAGAGGTAGTGAAGACGACGACAAAGGTGTACTTGGAAGAGTATTATGGGGTACCAGATGTGGCAGTGACTGTTGTGAATATAGAGATGGACGAGGCGTTTACGACGCCGTTGGAGACTCCTTGTGCTTCGCCGCCGTACTATACCCCGTCGCCTTCTCCTACTCGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.51

Weight (kDa)

5.07

Isoelectric Point (pI)

66.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11640 AT3G11640 AT3G52480
fragaria_vesca FvH4_6g20110
malus_domestica MD14G1037100.v1.1
prunus_persica Prupe.2G218900_v2.0.a1 Prupe.7G097300_v2.0.a1
pyrus_communis pycom12g03290 pycom14g03240
rosa_chinensis RchiOBHm_Chr3g0475571
rosa_laevigata RLG00000023833
rosa_multiflora Rmu_sc0000539.1_g000027
rosa_roxburghii Rroxscaffold_6G00406140
rosa_rugosa Rorug03G0150400
rosa_samantha Rh3AG200000 Rh3BG230400 Rh3CG224700 Rh3DG225400
rosa_wichuraiana Rw3G018140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 170, 255
Acc65I GGTACC 1 cut(s) 457
AccB1I GGYRCC 2 cut(s) 99, 457
AciI CCGC 2 cut(s) 257, 539
AcyI GRCGYC 4 cut(s) 100, 167, 252, 512
AfaI GTAC 4 cut(s) 320, 437, 459, 545
AhdI GACNNNNNGTC 1 cut(s) 166
AluBI AGCT 4 cut(s) 22, 112, 242, 289
AluI AGCT 4 cut(s) 22, 112, 242, 289
Alw26I GTCTC 4 cut(s) 17, 58, 374, 515
AlwNI CAGNNNCTG 2 cut(s) 289, 476
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 76
Asp718I GGTACC 1 cut(s) 457
AspLEI GCGC 1 cut(s) 102
AsuC2I CCSGG 2 cut(s) 156, 157
AvaI CYCGRG 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 234
BanI GGYRCC 2 cut(s) 99, 457
BauI CACGAG 1 cut(s) 570
BbsI GAAGAC 1 cut(s) 425
BccI CCATC 1 cut(s) 487
BceAI ACGGC 2 cut(s) 499, 526
BclI TGATCA 1 cut(s) 300
BcnI CCSGG 2 cut(s) 156, 157
BcoDI GTCTC 4 cut(s) 17, 58, 374, 515
BfaI CTAG 2 cut(s) 41, 180
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 103
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 539
BlsI GCNGC 1 cut(s) 540
Bme1390I CCNGG 2 cut(s) 156, 157
BmeRI GACNNNNNGTC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 101, 459
BmrFI CCNGG 2 cut(s) 156, 157
BmsI GCATC 2 cut(s) 135, 234
BpiI GAAGAC 1 cut(s) 425
BplI GAGNNNNNCTC 2 cut(s) 115, 147
BpmI CTGGAG 1 cut(s) 311
BpuMI CCSGG 2 cut(s) 156, 157
BsaHI GRCGYC 4 cut(s) 100, 167, 252, 512
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 3 cut(s) 154, 155, 156
BsaWI WCCGGW 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bse21I CCTNAGG 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 154, 155, 156
BseGI GGATG 2 cut(s) 90, 126
BseMII CTCAG 2 cut(s) 28, 248
BseRI GAGGAG 1 cut(s) 365
BsgI GTGCAG 2 cut(s) 15, 420
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 2 cut(s) 99, 457
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 3 cut(s) 103, 121, 156
BslFI GGGAC 3 cut(s) 40, 173, 239
BsmAI GTCTC 4 cut(s) 17, 58, 374, 515
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 3 cut(s) 40, 173, 239
BsnI GGCC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 17
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 2 cut(s) 81, 300
BspACI CCGC 2 cut(s) 257, 539
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 2 cut(s) 27, 247
BspLI GGNNCC 2 cut(s) 101, 459
BspT107I GGYRCC 2 cut(s) 99, 457
BspTNI GGTCTC 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 154, 155, 156
BssMI GATC 2 cut(s) 81, 300
BssNI GRCGYC 4 cut(s) 100, 167, 252, 512
BssSI CACGAG 1 cut(s) 570
Bst2BI CACGAG 1 cut(s) 570
Bst4CI ACNGT 2 cut(s) 318, 478
Bst6I CTCTTC 2 cut(s) 63, 438
BstACI GRCGYC 4 cut(s) 100, 167, 252, 512
BstC8I GCNNGC 2 cut(s) 20, 312
BstDEI CTNAG 2 cut(s) 14, 234
BstF5I GGATG 2 cut(s) 90, 126
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 2 cut(s) 84, 303
BstMAI GTCTC 4 cut(s) 17, 58, 374, 515
BstMBI GATC 2 cut(s) 81, 300
BstSCI CCNGG 2 cut(s) 154, 155
BstSFI CTRYAG 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 425
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 90, 126
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 314, 477
Cac8I GCNNGC 2 cut(s) 20, 312
CaiI CAGNNNCTG 2 cut(s) 289, 476
CfoI GCGC 1 cut(s) 102
Cfr9I CCCGGG 1 cut(s) 155
CseI GACGC 1 cut(s) 520
Csp6I GTAC 4 cut(s) 319, 436, 458, 544
CviAII CATG 2 cut(s) 298, 396
CviJI RGCY 9 cut(s) 22, 78, 112, 179, 187, 242, 289, 334, 369
CviKI_1 RGCY 9 cut(s) 22, 78, 112, 179, 187, 242, 289, 334, 369
CviQI GTAC 4 cut(s) 319, 436, 458, 544
DdeI CTNAG 2 cut(s) 14, 234
DinI GGCGCC 1 cut(s) 101
DpnI GATC 2 cut(s) 83, 302
DpnII GATC 2 cut(s) 81, 300
DriI GACNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 63, 438
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 2 cut(s) 63, 438
Eco31I GGTCTC 1 cut(s) 17
Eco81I CCTNAGG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 155
EgeI GGCGCC 1 cut(s) 101
EheI GGCGCC 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 2 cut(s) 301, 399
FaiI YATR 6 cut(s) 299, 347, 397, 453, 488, 549
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 3 cut(s) 40, 173, 239
FatI CATG 2 cut(s) 297, 395
FauI CCCGC 1 cut(s) 264
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 539
FokI GGATG 2 cut(s) 77, 113
Fsp4HI GCNGC 1 cut(s) 539
FspBI CTAG 2 cut(s) 41, 180
GlaI GCGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 1 cut(s) 78
HapII CCGG 3 cut(s) 103, 121, 156
HgaI GACGC 1 cut(s) 520
HhaI GCGC 1 cut(s) 102
Hin1I GRCGYC 4 cut(s) 100, 167, 252, 512
Hin1II CATG 2 cut(s) 301, 399
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HindIII AAGCTT 2 cut(s) 20, 110
HinfI GANTC 4 cut(s) 143, 161, 374, 523
HpaII CCGG 3 cut(s) 103, 121, 156
Hpy166II GTNNAC 3 cut(s) 342, 436, 507
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 3 cut(s) 236, 248, 572
Hpy8I GTNNAC 3 cut(s) 342, 436, 507
Hpy99I CGWCG 8 cut(s) 169, 172, 254, 331, 388, 427, 514, 559
HpyAV CCTTC 1 cut(s) 570
HpyCH4III ACNGT 2 cut(s) 318, 478
HpyCH4IV ACGT 3 cut(s) 167, 252, 386
HpyCH4V TGCA 3 cut(s) 32, 50, 401
HpyF3I CTNAG 2 cut(s) 14, 234
HpySE526I ACGT 3 cut(s) 167, 252, 386
Hsp92I GRCGYC 4 cut(s) 100, 167, 252, 512
Hsp92II CATG 2 cut(s) 301, 399
HspAI GCGC 1 cut(s) 100
KasI GGCGCC 1 cut(s) 99
KpnI GGTACC 1 cut(s) 461
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 2 cut(s) 81, 300
LmnI GCTCC 2 cut(s) 123, 286
LweI GCATC 2 cut(s) 135, 234
MaeI CTAG 2 cut(s) 41, 180
MaeII ACGT 3 cut(s) 167, 252, 386
MaeIII GTNAC 5 cut(s) 116, 171, 245, 279, 472
MalI GATC 2 cut(s) 83, 302
MboI GATC 2 cut(s) 81, 300
MboII GAAGA 6 cut(s) 50, 76, 118, 384, 430, 455
MflI RGATCY 1 cut(s) 81
MluCI AATT 2 cut(s) 45, 265
Mly113I GGCGCC 1 cut(s) 100
MlyI GAGTC 3 cut(s) 155, 368, 517
MmeI TCCRAC 1 cut(s) 498
MspI CCGG 3 cut(s) 103, 121, 156
MspR9I CCNGG 2 cut(s) 156, 157
NarI GGCGCC 1 cut(s) 100
NciI CCSGG 2 cut(s) 156, 157
NdeII GATC 2 cut(s) 81, 300
NlaIII CATG 2 cut(s) 301, 399
NlaIV GGNNCC 2 cut(s) 101, 459
NmuCI GTSAC 3 cut(s) 171, 245, 472
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PfeI GAWTC 1 cut(s) 143
PflFI GACNNNGTC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 540
PleI GAGTC 3 cut(s) 155, 368, 517
PluTI GGCGCC 1 cut(s) 103
PpsI GAGTC 3 cut(s) 155, 368, 517
PspN4I GGNNCC 2 cut(s) 101, 459
PstNI CAGNNNCTG 2 cut(s) 289, 476
PsuI RGATCY 1 cut(s) 81
PsyI GACNNNGTC 1 cut(s) 169
RsaI GTAC 4 cut(s) 320, 437, 459, 545
RsaNI GTAC 4 cut(s) 319, 436, 458, 544
SatI GCNGC 1 cut(s) 539
Sau3AI GATC 2 cut(s) 81, 300
SchI GAGTC 3 cut(s) 155, 368, 517
ScrFI CCNGG 2 cut(s) 156, 157
SfaNI GCATC 2 cut(s) 135, 234
SfcI CTRYAG 1 cut(s) 345
SfoI GGCGCC 1 cut(s) 101
SmaI CCCGGG 1 cut(s) 157
Sse9I AATT 2 cut(s) 45, 265
SsiI CCGC 2 cut(s) 257, 539
SspDI GGCGCC 1 cut(s) 99
SspMI CTAG 2 cut(s) 41, 180
StyD4I CCNGG 2 cut(s) 154, 155
TaaI ACNGT 2 cut(s) 318, 478
TaiI ACGT 3 cut(s) 170, 255, 389
TaqI TCGA 3 cut(s) 164, 228, 329
TasI AATT 2 cut(s) 45, 265
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 541
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 2 cut(s) 321, 477
TseFI GTSAC 3 cut(s) 171, 245, 472
Tsp45I GTSAC 3 cut(s) 171, 245, 472
TspDTI ATGAA 2 cut(s) 17, 384
TspMI CCCGGG 1 cut(s) 155
TspRI CASTG 2 cut(s) 321, 477
Tth111I GACNNNGTC 1 cut(s) 169
XmaI CCCGGG 1 cut(s) 155
XspI CTAG 2 cut(s) 41, 180
ZraI GACGTC 2 cut(s) 168, 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.