Prupe.7G097300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012142
Physical Location & Seq
Reverse (-)
12869629 .. 12870102
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G097300.1

Sequence Viewer

Length: 474 bp
ATGAATGGTGGTCTTAGCAAGCTCGGGACTGCGCTCACTGTAGTGTTTGCGGCCATTCTCGCAGCCCTAGCAACCCAGCTCTTCTTCCTCCTCCGGCGCCGGCTGAAGTCTCAGTCTCAGACCCGGATCGGGCCCCACGAAAACCCGCCTCACTCACAGCACCACAGAAGCGTCGACGTTGACGTGGACGACGTGTTCAAGTGGCAGCAGGCACTGTACGGCGTGTCGTCAAGGGTTTTGTTCACGATCGAGGAGGAGGAGGAGAGAAAGGGTCTGGACTTCGCCGAGACGACGACGCACTCGTCGTGCGCGGAGAAAGAGGTGAAGACGGCGACGACGGTGGTGCTGGACGTAGCTGTGACGGTGATGAGTGTAGAGGTGGACGACGGGACGACGCCATTTTCGACTCCTTGTGCTTCGCCGCCGTACTATACTCCGTCGCCTTCTCCCGGTCGTGAGACTTGTAGCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.17

Weight (kDa)

5.48

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11640 AT3G11640 AT3G52480
fragaria_vesca FvH4_6g20110
malus_domestica MD14G1037100.v1.1
prunus_persica Prupe.2G218900_v2.0.a1 Prupe.7G097300_v2.0.a1
pyrus_communis pycom12g03290 pycom14g03240
rosa_chinensis RchiOBHm_Chr3g0475571
rosa_laevigata RLG00000023833
rosa_multiflora Rmu_sc0000539.1_g000027
rosa_roxburghii Rroxscaffold_6G00406140
rosa_rugosa Rorug03G0150400
rosa_samantha Rh3AG200000 Rh3BG230400 Rh3CG224700 Rh3DG225400
rosa_wichuraiana Rw3G018140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 96
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 311
AciI CCGC 4 cut(s) 50, 146, 311, 422
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 125
AcyI GRCGYC 2 cut(s) 97, 395
AfaI GTAC 2 cut(s) 218, 428
AfiI CCNNNNNNNGG 2 cut(s) 129, 449
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 199
AjiI CACGTC 2 cut(s) 184, 193
AleI CACNNNNGTG 1 cut(s) 41
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 3 cut(s) 22, 79, 356
AluI AGCT 3 cut(s) 22, 79, 356
Alw26I GTCTC 4 cut(s) 114, 120, 281, 452
AlwI GGATC 1 cut(s) 134
AlwNI CAGNNNCTG 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 2 cut(s) 51, 131
ApaI GGGCCC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 62, 205
ArsI GACNNNNNNTTYG 2 cut(s) 385, 417
AspLEI GCGC 3 cut(s) 34, 99, 311
AspS9I GGNCC 2 cut(s) 131, 132
AsuC2I CCSGG 2 cut(s) 124, 450
AsuHPI GGTGA 2 cut(s) 334, 376
AvaI CYCGRG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 74, 217
BceAI ACGGC 3 cut(s) 235, 345, 409
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BcnI CCSGG 2 cut(s) 124, 450
BcoDI GTCTC 4 cut(s) 114, 120, 281, 452
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 100
BisI GCNGC 4 cut(s) 51, 63, 206, 422
BlsI GCNGC 4 cut(s) 52, 64, 207, 423
Bme1390I CCNGG 2 cut(s) 124, 450
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 2 cut(s) 184, 193
BmgT120I GGNCC 2 cut(s) 131, 132
BmiI GGNNCC 3 cut(s) 98, 133, 134
BmrFI CCNGG 2 cut(s) 124, 450
BpiI GAAGAC 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 124, 450
BsaHI GRCGYC 2 cut(s) 97, 395
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 449
Bse118I RCCGGY 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 129, 449
BseMII CTCAG 2 cut(s) 125, 131
BseRI GAGGAG 5 cut(s) 80, 266, 269, 272, 275
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 2 cut(s) 74, 217
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 311
Bsh1285I CGRYCG 2 cut(s) 249, 454
BshFI GGCC 2 cut(s) 53, 133
BshNI GGYRCC 1 cut(s) 96
BsiEI CGRYCG 2 cut(s) 249, 454
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 4 cut(s) 94, 100, 124, 450
BslFI GGGAC 2 cut(s) 40, 403
BslI CCNNNNNNNGG 2 cut(s) 129, 449
BsmAI GTCTC 4 cut(s) 114, 120, 281, 452
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 2 cut(s) 40, 403
BsnI GGCC 2 cut(s) 53, 133
BsoBI CYCGRG 1 cut(s) 23
Bsp120I GGGCCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 126, 246
BspACI CCGC 4 cut(s) 50, 146, 311, 422
BspANI GGCC 2 cut(s) 53, 133
BspCNI CTCAG 2 cut(s) 124, 130
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 3 cut(s) 98, 133, 134
BspPI GGATC 1 cut(s) 134
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 99
BssMI GATC 2 cut(s) 126, 246
BssNI GRCGYC 2 cut(s) 97, 395
Bst4CI ACNGT 4 cut(s) 40, 216, 340, 364
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 2 cut(s) 97, 395
BstC8I GCNNGC 3 cut(s) 20, 101, 210
BstDEI CTNAG 3 cut(s) 14, 111, 117
BstFNI CGCG 1 cut(s) 311
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 3 cut(s) 34, 99, 311
BstKTI GATC 2 cut(s) 129, 249
BstMAI GTCTC 4 cut(s) 114, 120, 281, 452
BstMBI GATC 2 cut(s) 126, 246
BstMCI CGRYCG 2 cut(s) 249, 454
BstMWI GCNNNNNNNGC 2 cut(s) 59, 68
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 2 cut(s) 122, 448
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 135
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 74, 217
BstV2I GAAGAC 1 cut(s) 332
BsuRI GGCC 2 cut(s) 53, 133
BtrI CACGTC 2 cut(s) 184, 193
BtsIMutI CAGTG 2 cut(s) 36, 212
Cac8I GCNNGC 3 cut(s) 20, 101, 210
CaiI CAGNNNCTG 1 cut(s) 214
CfoI GCGC 3 cut(s) 34, 99, 311
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 131, 132
CseI GACGC 3 cut(s) 160, 304, 403
Csp6I GTAC 2 cut(s) 217, 427
CviAII CATG 1 cut(s) 469
CviJI RGCY 7 cut(s) 22, 53, 65, 79, 103, 133, 356
CviKI_1 RGCY 7 cut(s) 22, 53, 65, 79, 103, 133, 356
CviQI GTAC 2 cut(s) 217, 427
DdeI CTNAG 3 cut(s) 14, 111, 117
DinI GGCGCC 1 cut(s) 98
DpnI GATC 2 cut(s) 128, 248
DpnII GATC 2 cut(s) 126, 246
DrdI GACNNNNNNGTC 1 cut(s) 301
DseDI GACNNNNNNGTC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 135
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 1 cut(s) 472
FaiI YATR 2 cut(s) 432, 470
FaqI GGGAC 2 cut(s) 40, 403
FatI CATG 1 cut(s) 468
FauI CCCGC 1 cut(s) 153
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 51, 63, 206, 422
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 51, 63, 206, 422
FspBI CTAG 1 cut(s) 68
GlaI GCGC 3 cut(s) 33, 98, 310
GluI GCNGC 4 cut(s) 51, 63, 206, 422
GsaI CCCAGC 1 cut(s) 79
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 2 cut(s) 53, 133
HapII CCGG 4 cut(s) 94, 100, 124, 450
HgaI GACGC 3 cut(s) 160, 304, 403
HhaI GCGC 3 cut(s) 34, 99, 311
Hin1I GRCGYC 2 cut(s) 97, 395
Hin1II CATG 1 cut(s) 472
Hin6I GCGC 3 cut(s) 32, 97, 309
HinP1I GCGC 3 cut(s) 32, 97, 309
HincII GTYRAC 2 cut(s) 175, 181
HindII GTYRAC 2 cut(s) 175, 181
HinfI GANTC 1 cut(s) 406
HpaII CCGG 4 cut(s) 94, 100, 124, 450
HphI GGTGA 2 cut(s) 334, 376
Hpy166II GTNNAC 5 cut(s) 175, 181, 187, 243, 382
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 4 cut(s) 25, 244, 275, 455
Hpy8I GTNNAC 5 cut(s) 175, 181, 187, 243, 382
HpyAV CCTTC 1 cut(s) 453
HpyCH4III ACNGT 4 cut(s) 40, 216, 340, 364
HpyCH4IV ACGT 4 cut(s) 177, 183, 192, 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 68
HpyF3I CTNAG 3 cut(s) 14, 111, 117
HpySE526I ACGT 4 cut(s) 177, 183, 192, 351
Hsp92I GRCGYC 2 cut(s) 97, 395
Hsp92II CATG 1 cut(s) 472
HspAI GCGC 3 cut(s) 32, 97, 309
KasI GGCGCC 1 cut(s) 96
KroI GCCGGC 1 cut(s) 99
KroNI GCCGGC 1 cut(s) 101
Kzo9I GATC 2 cut(s) 126, 246
LguI GCTCTTC 1 cut(s) 86
LpnPI CCDG 8 cut(s) 89, 107, 113, 137, 194, 260, 332, 463
Lsp1109I GCAGC 2 cut(s) 74, 217
MaeI CTAG 1 cut(s) 68
MaeII ACGT 4 cut(s) 177, 183, 192, 351
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 128, 248
MboI GATC 2 cut(s) 126, 246
MboII GAAGA 3 cut(s) 73, 76, 337
MhlI GDGCHC 1 cut(s) 135
Mly113I GGCGCC 1 cut(s) 97
MlyI GAGTC 1 cut(s) 400
MnlI CCTC 9 cut(s) 98, 101, 159, 244, 247, 250, 253, 313, 370
MroNI GCCGGC 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 4 cut(s) 94, 100, 124, 450
MspR9I CCNGG 2 cut(s) 124, 450
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 59, 68
NaeI GCCGGC 1 cut(s) 101
NarI GGCGCC 1 cut(s) 97
NciI CCSGG 2 cut(s) 124, 450
NdeII GATC 2 cut(s) 126, 246
NgoMIV GCCGGC 1 cut(s) 99
NlaIII CATG 1 cut(s) 472
NlaIV GGNNCC 3 cut(s) 98, 133, 134
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 358
NspI RCATGY 1 cut(s) 472
OliI CACNNNNGTG 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 6 cut(s) 135, 180, 189, 299, 302, 401
PdiI GCCGGC 1 cut(s) 101
PkrI GCNGC 4 cut(s) 52, 64, 207, 423
Ple19I CGATCG 1 cut(s) 249
PleI GAGTC 1 cut(s) 400
PluTI GGCGCC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 75
PspN4I GGNNCC 3 cut(s) 98, 133, 134
PspOMI GGGCCC 1 cut(s) 131
PspPI GGNCC 2 cut(s) 131, 132
PstNI CAGNNNCTG 1 cut(s) 214
PvuI CGATCG 1 cut(s) 249
RsaI GTAC 2 cut(s) 218, 428
RsaNI GTAC 2 cut(s) 217, 427
RseI CAYNNNNRTG 1 cut(s) 41
SalI GTCGAC 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 86
SatI GCNGC 4 cut(s) 51, 63, 206, 422
Sau3AI GATC 2 cut(s) 126, 246
Sau96I GGNCC 2 cut(s) 131, 132
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 2 cut(s) 124, 450
SduI GDGCHC 1 cut(s) 135
SetI ASST 9 cut(s) 24, 81, 180, 186, 195, 324, 354, 358, 381
SfcI CTRYAG 1 cut(s) 39
SfoI GGCGCC 1 cut(s) 98
SgrDI CGTCGACG 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 41
SsiI CCGC 4 cut(s) 50, 146, 311, 422
SspDI GGCGCC 1 cut(s) 96
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 122, 448
TaaI ACNGT 4 cut(s) 40, 216, 340, 364
TaiI ACGT 4 cut(s) 180, 186, 195, 354
TaqI TCGA 3 cut(s) 174, 249, 404
TauI GCSGC 2 cut(s) 53, 424
TscAI CASTG 2 cut(s) 43, 219
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 2 cut(s) 62, 205
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 2 cut(s) 43, 219
XceI RCATGY 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.