AT3G52480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012142
Physical Location & Seq
Reverse (-)
19451951 .. 19453212
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52480.1

Sequence Viewer

Length: 630 bp
ATGGGTCTTACCCCAACTGCAACCCTACTCGTCGCTGTTTTCGCGTTTTGCCTCGTCGCTGTAACGGCGCAGTTCGCCTACGTTTTGTGGTGGAAACGTCGGTTCCGTCGTCGGAGTATCGCCGGATCAGAACGCGACGCTTTTTCCTCTCGCGGTGGTGACCTAACGGCTACACCACCGCCATCGAAAGAGCTTCTTTACTTCTTCTTGTTCTGTCTCGAAAACAAACAGTTCAGAATAGGATCTGCCACCGCTCCGCCGCTCCCTGCAGCCGCACCGCCGGTTAATGACGTGGCATCAAAGTGGTCAATAAACGGAGAAAATTTACTTTGCGGACCTTCGGAGACTTTGTTTACCATCGCTGAAGACTATACTAGCGAGTCCGATCATCGGACGGGTGAGATTGATCCACGTGGAAGCATCTTTACAGAGGATCATGTAAAGGATGATGAAGTGGAAGAGGAGGTAGTCGCGACGGATATAAGCGACGACGAGGTTGACTTTAGCCACTATAATCAAACTACGCCGTTTTCTACTCCATGTGCTTCCCCACCGTTTTACACGCCGTCTCCTTCTCCGATTCGTGATGATCTCTCTAAGACGGTACGTGAGGAGAGTGTGTACGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.11

Weight (kDa)

4.59

Isoelectric Point (pI)

59.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11640 AT3G11640 AT3G52480
fragaria_vesca FvH4_6g20110
malus_domestica MD14G1037100.v1.1
prunus_persica Prupe.2G218900_v2.0.a1 Prupe.7G097300_v2.0.a1
pyrus_communis pycom12g03290 pycom14g03240
rosa_chinensis RchiOBHm_Chr3g0475571
rosa_laevigata RLG00000023833
rosa_multiflora Rmu_sc0000539.1_g000027
rosa_roxburghii Rroxscaffold_6G00406140
rosa_rugosa Rorug03G0150400
rosa_samantha Rh3AG200000 Rh3BG230400 Rh3CG224700 Rh3DG225400
rosa_wichuraiana Rw3G018140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 254, 262
AccII CGCG 4 cut(s) 44, 135, 153, 473
AciI CCGC 8 cut(s) 153, 179, 252, 257, 260, 273, 278, 333
AclWI GGATC 4 cut(s) 133, 250, 401, 441
AcsI RAATTY 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 384
AcvI CACGTG 1 cut(s) 413
AfaI GTAC 2 cut(s) 606, 623
AfiI CCNNNNNNNGG 1 cut(s) 390
AjiI CACGTC 1 cut(s) 292
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 3 cut(s) 221, 338, 573
AlwI GGATC 4 cut(s) 133, 250, 401, 441
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 322
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 170, 410
AvaII GGWCC 1 cut(s) 335
BarI GAAGNNNNNNTAC 2 cut(s) 409, 441
BbrPI CACGTG 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 281
BccI CCATC 2 cut(s) 190, 365
BceAI ACGGC 4 cut(s) 81, 183, 511, 550
BcoDI GTCTC 3 cut(s) 221, 338, 573
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 3 cut(s) 260, 270, 273
BlsI GCNGC 3 cut(s) 261, 271, 274
Bme18I GGWCC 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 104
BmsI GCATC 2 cut(s) 305, 429
BpiI GAAGAC 1 cut(s) 372
BsaAI YACGTR 2 cut(s) 413, 608
BsaXI ACNNNNNCTCC 5 cut(s) 335, 365, 553, 583, 605
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 280
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 1 cut(s) 390
BseRI GAGGAG 2 cut(s) 476, 626
BseXI GCAGC 1 cut(s) 281
Bsh1236I CGCG 4 cut(s) 44, 135, 153, 473
BsiSI CCGG 2 cut(s) 123, 281
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 3 cut(s) 221, 338, 573
BsmBI CGTCTC 1 cut(s) 573
Bsp143I GATC 6 cut(s) 125, 242, 385, 406, 433, 589
Bsp68I TCGCGA 1 cut(s) 473
BspACI CCGC 8 cut(s) 153, 179, 252, 257, 260, 273, 278, 333
BspFNI CGCG 4 cut(s) 44, 135, 153, 473
BspLI GGNNCC 1 cut(s) 104
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 4 cut(s) 133, 250, 401, 441
BsrBI CCGCTC 2 cut(s) 254, 262
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssMI GATC 6 cut(s) 125, 242, 385, 406, 433, 589
Bst4CI ACNGT 3 cut(s) 231, 555, 604
Bst6I CTCTTC 1 cut(s) 453
BstBAI YACGTR 2 cut(s) 413, 608
BstDEI CTNAG 1 cut(s) 597
BstEII GGTNACC 1 cut(s) 158
BstF5I GGATG 1 cut(s) 451
BstFNI CGCG 4 cut(s) 44, 135, 153, 473
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 6 cut(s) 128, 245, 388, 409, 436, 592
BstMAI GTCTC 3 cut(s) 221, 338, 573
BstMBI GATC 6 cut(s) 125, 242, 385, 406, 433, 589
BstMWI GCNNNNNNNGC 3 cut(s) 41, 65, 74
BstPI GGTNACC 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 4 cut(s) 44, 135, 153, 473
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 343
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 451
BtuMI TCGCGA 1 cut(s) 473
CfoI GCGC 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 335
CseI GACGC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 605, 622
CviAII CATG 2 cut(s) 437, 540
CviJI RGCY 5 cut(s) 170, 193, 272, 507, 627
CviKI_1 RGCY 5 cut(s) 170, 193, 272, 507, 627
CviQI GTAC 2 cut(s) 605, 622
DdeI CTNAG 1 cut(s) 597
DpnI GATC 6 cut(s) 127, 244, 387, 408, 435, 591
DpnII GATC 6 cut(s) 125, 242, 385, 406, 433, 589
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
EciI GGCGGA 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 384
Eco72I CACGTG 1 cut(s) 413
Eco91I GGTNACC 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 573
FaeI CATG 2 cut(s) 440, 543
FaiI YATR 5 cut(s) 372, 438, 482, 513, 541
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FatI CATG 2 cut(s) 436, 539
Fnu4HI GCNGC 3 cut(s) 260, 270, 273
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 3 cut(s) 260, 270, 273
FspBI CTAG 1 cut(s) 375
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 260, 270, 273
HapII CCGG 2 cut(s) 123, 281
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 70
Hin1II CATG 2 cut(s) 440, 543
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 2 cut(s) 380, 580
HpaII CCGG 2 cut(s) 123, 281
HphI GGTGA 2 cut(s) 170, 410
Hpy166II GTNNAC 3 cut(s) 354, 499, 622
Hpy188I TCNGA 7 cut(s) 114, 130, 236, 343, 385, 393, 579
Hpy188III TCNNGA 3 cut(s) 218, 472, 584
Hpy8I GTNNAC 3 cut(s) 354, 499, 622
Hpy99I CGWCG 9 cut(s) 35, 59, 102, 111, 114, 140, 478, 491, 494
HpyAV CCTTC 2 cut(s) 348, 582
HpyCH4III ACNGT 3 cut(s) 231, 555, 604
HpyCH4IV ACGT 5 cut(s) 81, 97, 291, 412, 607
HpyCH4V TGCA 2 cut(s) 20, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 65, 74
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 5 cut(s) 81, 97, 291, 412, 607
Hsp92II CATG 2 cut(s) 440, 543
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 6 cut(s) 125, 242, 385, 406, 433, 589
LmnI GCTCC 2 cut(s) 259, 267
LpnPI CCDG 3 cut(s) 136, 279, 294
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 2 cut(s) 305, 429
MaeI CTAG 1 cut(s) 375
MaeII ACGT 5 cut(s) 81, 97, 291, 412, 607
MaeIII GTNAC 2 cut(s) 61, 158
MalI GATC 6 cut(s) 127, 244, 387, 408, 435, 591
MbiI CCGCTC 2 cut(s) 254, 262
MboI GATC 6 cut(s) 125, 242, 385, 406, 433, 589
MboII GAAGA 3 cut(s) 196, 377, 470
MflI RGATCY 1 cut(s) 242
MluCI AATT 1 cut(s) 322
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 7 cut(s) 62, 157, 424, 454, 457, 487, 604
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 301
MspI CCGG 2 cut(s) 123, 281
MvnI CGCG 4 cut(s) 44, 135, 153, 473
MwoI GCNNNNNNNGC 3 cut(s) 41, 65, 74
NdeII GATC 6 cut(s) 125, 242, 385, 406, 433, 589
NlaIII CATG 2 cut(s) 440, 543
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 158
NruI TCGCGA 1 cut(s) 473
PcsI WCGNNNNNNNCGW 2 cut(s) 103, 106
PfeI GAWTC 1 cut(s) 580
PkrI GCNGC 3 cut(s) 261, 271, 274
PleI GAGTC 1 cut(s) 388
PmaCI CACGTG 1 cut(s) 413
PmlI CACGTG 1 cut(s) 413
PpsI GAGTC 1 cut(s) 388
Ppu21I YACGTR 2 cut(s) 413, 608
PspCI CACGTG 1 cut(s) 413
PspEI GGTNACC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 335
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 242
RruI TCGCGA 1 cut(s) 473
RsaI GTAC 2 cut(s) 606, 623
RsaNI GTAC 2 cut(s) 605, 622
RseI CAYNNNNRTG 1 cut(s) 301
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 3 cut(s) 260, 270, 273
Sau3AI GATC 6 cut(s) 125, 242, 385, 406, 433, 589
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 389
SfaNI GCATC 2 cut(s) 305, 429
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 301
Sse9I AATT 1 cut(s) 322
SsiI CCGC 8 cut(s) 153, 179, 252, 257, 260, 273, 278, 333
SspMI CTAG 1 cut(s) 375
TaaI ACNGT 3 cut(s) 231, 555, 604
TaiI ACGT 5 cut(s) 84, 100, 294, 415, 610
TaqI TCGA 2 cut(s) 185, 219
TasI AATT 1 cut(s) 322
TauI GCSGC 2 cut(s) 262, 275
TfiI GAWTC 1 cut(s) 580
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 465
TspGWI ACGGA 3 cut(s) 95, 330, 491
VpaK11BI GGWCC 1 cut(s) 335
XapI RAATTY 1 cut(s) 322
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.