AT3G11945

Homogentisate phytyltransferase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008712
Physical Location & Seq
Reverse (-)
3779839 .. 3782981
3143 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11945.2

Sequence Viewer

Length: 1161 bp
ATGGAGCTCTCGATCTCACAATCACCGCGTGTTCGGTTCTCGTCTCTGGCGCCTCGTTTCTTAGCAGCTTCTCATCATCATCGTCCTTCTGTGCATTTAGCTGGGAAGTTTATAAGCCTCCCTCGAGATGTTCGCTTCACGAGCTTATCAACTTCAAGAATGCGGTCCAAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGGGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGAATTGCCCGGTTCCAAAATGCTTGCTGGAGATTTCTTAGACCCCATACAATCCGCGGAACAGCTTTAGGATCCACTGCCTTGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAGTCTTGTACTAAAGGCACTTTCAGGTCTTCTTGCTCTTATTTGTGGGAATGGTTATATAGTCGGCATCAATCAGATCTACGACATTGGAATCGACAAAGTGAACAAACCATACTTGCCAATAGCAGCAGGAGATCTATCAGTGCAGTCTGCTTGGTTGTTAGTGATATTTTTTGCGATAGCAGGGCTTTTAGTTGTCGGATTTAACTTTGGTCCATTCATTACAAGCCTATACTCTCTTGGCCTTTTTCTGGGAACCATCTATTCTGTTCCACCCCTCAGAATGAAAAGATTCCCAGTTGCAGCATTTCTTATTATTGCCACGGTACGAGGTTTCCTTCTTAACTTTGGTGTGTACCATGCTACAAGAGCTGCTCTTGGACTTCCATTTCAGTGGAGTGCACCTGTGGCGTTCATCACATCTTTTGTGACACTGTTTGCACTGGTCATTGCTATTACAAAGGACCTTCCTGATGTTGAAGGAGATCGAAAGTTCCAAATATCAACCCTGGCAACAAAACTTGGAGTGAGAAACATTGCATTCCTCGGTTCTGGACTTCTGCTAGTAAATTATGTTTCAGCCATATCACTAGCTTTCTACATGCCTCAGGTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGCTTAATTTTCCAGACATGGGTACTAGAAAAAGCAAACTACACCAAGGAAGCTATCTCAGGATATTATCGGTTTATATGGAATCTCTTCTACGCAGAGTATCTGTTATTCCCCTTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
UbiA

Protein Analysis

386

Amino Acids

42.84

Weight (kDa)

10.15

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 118 - 382 4.9e-36 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 49
AccII CGCG 2 cut(s) 28, 312
AciI CCGC 4 cut(s) 26, 163, 310, 312
AclWI GGATC 3 cut(s) 236, 321, 334
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 1020
AcyI GRCGYC 1 cut(s) 50
AdeI CACNNNGTG 1 cut(s) 29
AfaI GTAC 4 cut(s) 390, 708, 737, 1062
AfiI CCNNNNNNNGG 2 cut(s) 631, 1057
AflIII ACRYGT 1 cut(s) 1021
AgsI TTSAA 3 cut(s) 156, 180, 860
AjnI CCWGG 1 cut(s) 888
Alw21I GWGCWC 2 cut(s) 9, 784
Alw26I GTCTC 1 cut(s) 48
Alw44I GTGCAC 1 cut(s) 780
AlwI GGATC 3 cut(s) 236, 321, 334
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 1 cut(s) 622
ApaLI GTGCAC 1 cut(s) 780
ApeKI GCWGC 5 cut(s) 65, 227, 506, 683, 752
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
Asp700I GAANNNNTTC 2 cut(s) 671, 1124
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 3 cut(s) 165, 593, 844
AsuC2I CCSGG 2 cut(s) 206, 265
AsuHPI GGTGA 2 cut(s) 15, 352
AvaI CYCGRG 1 cut(s) 123
AvaII GGWCC 3 cut(s) 165, 593, 844
AxyI CCTNAGG 1 cut(s) 987
BaeGI GKGCMC 1 cut(s) 784
BamHI GGATCC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 9
BauI CACGAG 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 2 cut(s) 9, 784
BbvI GCAGC 5 cut(s) 77, 214, 518, 695, 739
BccI CCATC 1 cut(s) 647
BciT130I CCWGG 1 cut(s) 890
BclI TGATCA 1 cut(s) 372
BcnI CCSGG 2 cut(s) 206, 265
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 4 cut(s) 944, 971, 1064, 1159
BfoI RGCGCY 1 cut(s) 53
BglII AGATCT 2 cut(s) 456, 514
BisI GCNGC 5 cut(s) 66, 228, 507, 684, 753
BlsI GCNGC 5 cut(s) 67, 229, 508, 685, 754
Bme1390I CCNGG 3 cut(s) 206, 265, 890
Bme18I GGWCC 3 cut(s) 165, 593, 844
BmeT110I CYCGRG 1 cut(s) 123
BmgT120I GGNCC 3 cut(s) 165, 593, 844
BmiI GGNNCC 4 cut(s) 51, 269, 328, 637
BmrFI CCNGG 3 cut(s) 206, 265, 890
BmrI ACTGGG 1 cut(s) 671
BmsI GCATC 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 671
BpiI GAAGAC 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 304
BpuMI CCSGG 2 cut(s) 206, 265
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 6 cut(s) 310, 336, 702, 888, 925, 1083
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 1057
Bse1I ACTGG 3 cut(s) 245, 677, 828
Bse21I CCTNAGG 1 cut(s) 987
Bse3DI GCAATG 2 cut(s) 828, 915
BseBI CCWGG 1 cut(s) 890
BseDI CCNNGG 6 cut(s) 310, 336, 702, 888, 925, 1083
BseLI CCNNNNNNNGG 2 cut(s) 631, 1057
BseMI GCAATG 2 cut(s) 828, 915
BseMII CTCAG 5 cut(s) 222, 230, 673, 1001, 1110
BseNI ACTGG 3 cut(s) 245, 677, 828
BseSI GKGCMC 1 cut(s) 784
BseXI GCAGC 5 cut(s) 77, 214, 518, 695, 739
BseYI CCCAGC 1 cut(s) 101
BsgI GTGCAG 2 cut(s) 545, 1002
Bsh1236I CGCG 2 cut(s) 28, 312
BshFI GGCC 1 cut(s) 624
BshNI GGYRCC 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 9, 784
BsiHKCI CYCGRG 1 cut(s) 123
BsiSI CCGG 2 cut(s) 205, 265
BslI CCNNNNNNNGG 2 cut(s) 631, 1057
BsmAI GTCTC 1 cut(s) 48
BsmBI CGTCTC 1 cut(s) 48
BsmI GAATGC 2 cut(s) 165, 920
BsnI GGCC 1 cut(s) 624
BsoBI CYCGRG 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 9, 784
Bsp143I GATC 8 cut(s) 12, 241, 326, 372, 456, 514, 865, 1026
BspACI CCGC 4 cut(s) 26, 163, 310, 312
BspANI GGCC 1 cut(s) 624
BspCNI CTCAG 5 cut(s) 223, 229, 672, 1000, 1109
BspFNI CGCG 2 cut(s) 28, 312
BspLI GGNNCC 4 cut(s) 51, 269, 328, 637
BspPI GGATC 3 cut(s) 236, 321, 334
BspT107I GGYRCC 1 cut(s) 49
BsrDI GCAATG 2 cut(s) 828, 915
BsrI ACTGG 3 cut(s) 245, 677, 828
BssECI CCNNGG 6 cut(s) 310, 336, 702, 888, 925, 1083
BssMI GATC 8 cut(s) 12, 241, 326, 372, 456, 514, 865, 1026
BssNI GRCGYC 1 cut(s) 50
BssSI CACGAG 1 cut(s) 139
BssT1I CCWWGG 2 cut(s) 336, 1083
Bst2BI CACGAG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 890
Bst4CI ACNGT 2 cut(s) 706, 816
Bst6I CTCTTC 1 cut(s) 1130
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 7 cut(s) 61, 216, 231, 293, 659, 987, 1096
BstDSI CCRYGG 2 cut(s) 310, 702
BstFNI CGCG 2 cut(s) 28, 312
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 8 cut(s) 15, 244, 329, 375, 459, 517, 868, 1029
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 8 cut(s) 12, 241, 326, 372, 456, 514, 865, 1026
BstMWI GCNNNNNNNGC 3 cut(s) 141, 749, 788
BstNI CCWGG 1 cut(s) 890
BstNSI RCATGY 3 cut(s) 213, 985, 1025
BstSCI CCNGG 3 cut(s) 204, 263, 888
BstSLI GKGCMC 1 cut(s) 784
BstUI CGCG 2 cut(s) 28, 312
BstV1I GCAGC 5 cut(s) 77, 214, 518, 695, 739
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 3 cut(s) 326, 456, 514
BstXI CCANNNNNNTGG 2 cut(s) 337, 774
BstYI RGATCY 3 cut(s) 326, 456, 514
Bsu36I CCTNAGG 1 cut(s) 987
BsuRI GGCC 1 cut(s) 624
BtgI CCRYGG 2 cut(s) 310, 702
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 6 cut(s) 252, 330, 528, 779, 812, 821
Cac8I GCNNGC 1 cut(s) 280
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 165, 593, 844
Cfr42I CCGCGG 1 cut(s) 313
Csp6I GTAC 4 cut(s) 389, 707, 736, 1061
CviAII CATG 5 cut(s) 210, 740, 982, 1022, 1056
CviQI GTAC 4 cut(s) 389, 707, 736, 1061
DdeI CTNAG 7 cut(s) 61, 216, 231, 293, 659, 987, 1096
DinI GGCGCC 1 cut(s) 51
DpnI GATC 8 cut(s) 14, 243, 328, 374, 458, 516, 867, 1028
DpnII GATC 8 cut(s) 12, 241, 326, 372, 456, 514, 865, 1026
DraIII CACNNNGTG 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 1130
EarI CTCTTC 1 cut(s) 1130
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 336, 1083
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 3 cut(s) 165, 593, 844
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 1020
Eco81I CCTNAGG 1 cut(s) 987
Eco88I CYCGRG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 888
EcoT14I CCWWGG 2 cut(s) 336, 1083
EcoT38I GRGCYC 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 51
EheI GGCGCC 1 cut(s) 51
ErhI CCWWGG 2 cut(s) 336, 1083
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 5 cut(s) 213, 743, 985, 1025, 1059
FatI CATG 5 cut(s) 209, 739, 981, 1021, 1055
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 5 cut(s) 66, 228, 507, 684, 753
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 5 cut(s) 66, 228, 507, 684, 753
FspBI CTAG 4 cut(s) 944, 971, 1064, 1159
GlaI GCGC 1 cut(s) 51
GluI GCNGC 5 cut(s) 66, 228, 507, 684, 753
GsaI CCCAGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 304
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 1 cut(s) 624
HapII CCGG 2 cut(s) 205, 265
HhaI GCGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 5 cut(s) 213, 743, 985, 1025, 1059
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HinfI GANTC 6 cut(s) 233, 382, 471, 672, 1012, 1120
HpaII CCGG 2 cut(s) 205, 265
HphI GGTGA 2 cut(s) 15, 352
Hpy166II GTNNAC 3 cut(s) 484, 736, 782
Hpy188I TCNGA 4 cut(s) 238, 456, 581, 662
Hpy188III TCNNGA 8 cut(s) 10, 125, 139, 156, 851, 933, 1051, 1098
Hpy8I GTNNAC 3 cut(s) 484, 736, 782
HpyAV CCTTC 4 cut(s) 96, 728, 854, 857
HpyCH4III ACNGT 2 cut(s) 706, 816
HpyCH4V TGCA 7 cut(s) 94, 526, 683, 782, 821, 920, 1019
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 749, 788
HpyF3I CTNAG 7 cut(s) 61, 216, 231, 293, 659, 987, 1096
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 5 cut(s) 213, 743, 985, 1025, 1059
HspAI GCGC 1 cut(s) 50
KasI GGCGCC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 372
KspI CCGCGG 1 cut(s) 313
Kzo9I GATC 8 cut(s) 12, 241, 326, 372, 456, 514, 865, 1026
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 5 cut(s) 77, 214, 518, 695, 739
LweI GCATC 1 cut(s) 456
MaeI CTAG 4 cut(s) 944, 971, 1064, 1159
MaeIII GTNAC 2 cut(s) 340, 808
MalI GATC 8 cut(s) 14, 243, 328, 374, 458, 516, 867, 1028
MboI GATC 8 cut(s) 12, 241, 326, 372, 456, 514, 865, 1026
MboII GAAGA 2 cut(s) 401, 1117
MflI RGATCY 3 cut(s) 326, 456, 514
MhlI GDGCHC 2 cut(s) 9, 784
MluCI AATT 5 cut(s) 170, 184, 258, 949, 1044
Mly113I GGCGCC 1 cut(s) 50
MlyI GAGTC 2 cut(s) 242, 391
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 8 cut(s) 63, 128, 132, 668, 704, 935, 992, 996
MroXI GAANNNNTTC 2 cut(s) 671, 1124
MseI TTAA 3 cut(s) 585, 723, 1043
MslI CAYNNNNRTG 1 cut(s) 772
MspA1I CMGCKG 1 cut(s) 312
MspI CCGG 2 cut(s) 205, 265
MspR9I CCNGG 3 cut(s) 206, 265, 890
Mva1269I GAATGC 2 cut(s) 165, 920
MvaI CCWGG 1 cut(s) 890
MvnI CGCG 2 cut(s) 28, 312
MwoI GCNNNNNNNGC 3 cut(s) 141, 749, 788
NarI GGCGCC 1 cut(s) 50
NciI CCSGG 2 cut(s) 206, 265
NdeII GATC 8 cut(s) 12, 241, 326, 372, 456, 514, 865, 1026
NlaIII CATG 5 cut(s) 213, 743, 985, 1025, 1059
NlaIV GGNNCC 4 cut(s) 51, 269, 328, 637
NmuCI GTSAC 2 cut(s) 340, 808
NspI RCATGY 3 cut(s) 213, 985, 1025
PaeR7I CTCGAG 1 cut(s) 123
PciI ACATGT 1 cut(s) 1021
PctI GAATGC 2 cut(s) 165, 920
PdmI GAANNNNTTC 2 cut(s) 671, 1124
PfeI GAWTC 4 cut(s) 471, 672, 1012, 1120
PkrI GCNGC 5 cut(s) 67, 229, 508, 685, 754
PleI GAGTC 2 cut(s) 241, 390
PluTI GGCGCC 1 cut(s) 53
PpsI GAGTC 2 cut(s) 241, 390
PpuMI RGGWCCY 1 cut(s) 844
PscI ACATGT 1 cut(s) 1021
PsiI TTATAA 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 844
Psp6I CCWGG 1 cut(s) 888
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 888
PspN4I GGNNCC 4 cut(s) 51, 269, 328, 637
PspPI GGNCC 3 cut(s) 165, 593, 844
PspPPI RGGWCCY 1 cut(s) 844
PsrI GAACNNNNNNTAC 2 cut(s) 476, 508
PsuI RGATCY 3 cut(s) 326, 456, 514
RsaI GTAC 4 cut(s) 390, 708, 737, 1062
RsaNI GTAC 4 cut(s) 389, 707, 736, 1061
RseI CAYNNNNRTG 1 cut(s) 772
SacI GAGCTC 1 cut(s) 9
SacII CCGCGG 1 cut(s) 313
SaqAI TTAA 3 cut(s) 585, 723, 1043
SatI GCNGC 5 cut(s) 66, 228, 507, 684, 753
Sau3AI GATC 8 cut(s) 12, 241, 326, 372, 456, 514, 865, 1026
Sau96I GGNCC 3 cut(s) 165, 593, 844
SchI GAGTC 2 cut(s) 242, 391
ScrFI CCNGG 3 cut(s) 206, 265, 890
SduI GDGCHC 2 cut(s) 9, 784
SfaNI GCATC 1 cut(s) 456
SfoI GGCGCC 1 cut(s) 51
Sfr274I CTCGAG 1 cut(s) 123
Sfr303I CCGCGG 1 cut(s) 313
SgrBI CCGCGG 1 cut(s) 313
SinI GGWCC 3 cut(s) 165, 593, 844
SlaI CTCGAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 772
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 5 cut(s) 170, 184, 258, 949, 1044
SsiI CCGC 4 cut(s) 26, 163, 310, 312
SspDI GGCGCC 1 cut(s) 49
SspMI CTAG 4 cut(s) 944, 971, 1064, 1159
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 3 cut(s) 204, 263, 888
StyI CCWWGG 2 cut(s) 336, 1083
TaaI ACNGT 2 cut(s) 706, 816
TaqI TCGA 4 cut(s) 11, 124, 474, 868
TasI AATT 5 cut(s) 170, 184, 258, 949, 1044
TatI WGTACW 1 cut(s) 388
TfiI GAWTC 4 cut(s) 471, 672, 1012, 1120
Tru1I TTAA 3 cut(s) 585, 723, 1043
Tru9I TTAA 3 cut(s) 585, 723, 1043
TscAI CASTG 6 cut(s) 252, 337, 528, 779, 819, 828
TseFI GTSAC 2 cut(s) 340, 808
TseI GCWGC 5 cut(s) 65, 227, 506, 683, 752
Tsp45I GTSAC 2 cut(s) 340, 808
TspDTI ATGAA 3 cut(s) 589, 680, 784
TspRI CASTG 6 cut(s) 252, 337, 528, 779, 819, 828
VneI GTGCAC 1 cut(s) 780
VpaK11BI GGWCC 3 cut(s) 165, 593, 844
XapI RAATTY 1 cut(s) 170
XceI RCATGY 3 cut(s) 213, 985, 1025
XhoI CTCGAG 1 cut(s) 123
XmnI GAANNNNTTC 2 cut(s) 671, 1124
XspI CTAG 4 cut(s) 944, 971, 1064, 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.