Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008712

Physical Location & Seq

Genomic Coordinates Reverse (-)

12125875 .. 12130649

Gene Structure 4775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G086500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGAGCTCTCATTCGCTCCCTCATCTTCTCCACGGTTTCCAGCTCTAACCCCTCATTGCAAGACCTCCTCTTCTTTTCCTTCAACTTTCGTTAAGCCAACTTCCAAATCCCCCTTTGCTTCTCTCTCAAAATGCACACAAAACTTGTACTCAATTGGGCTCTACAGAAGCTCAAAGTCCTTACCCAACTGTCAGAAGAGGCGAAATTCCATCTGGGCCTGCAGTCAAGTTGAAGCTGCTGGATCTGATCCAGTATTGACCAGAATTTCAGATTTTAAAGATGCTTGTTGGAGATTCCTGAGGCCTCATACCATACGTGGAACAGTTCTGGGTTCTACTGCTTTGGTGACTAGAGCGTTGATTGAGAACTCCAATTTGATAAAGTGGTCTCTGCTGTTTAAGGCATTCTCTGGTCTTTTTGCTCTACTATGTGGGAATGGTTACATAGTTGGCATCAACCAGATTTACGATATCAAAATTGACAAGGTAAACAAACCTTATTTACCTATTGCTGCAGGGGACCTTTCAGTTAAATCAGCATGGCTTCTGGTGGTATTTTTTGTAGTGACTGGCCTGTTGATTGTCGGAATGAACTTTGGGCCATTCATTACTTCTCTATACAGTCTTGGTCTTTTCCTTGGTACCATATATTCTGTTCCTCCGTTTAGAATGAAGAGATTTCCTGTTGCAGCATTTCTTATAATTGCTACGGTACGGGGTTTCCTTCTTAATTTTGGTGTATATTATGCCACTAGAGCTGCCCTTGGGCTTCAATTTGAGTGGAGCTCGCCCGTGGCTTTTATCACTACCTTTGTAACATTATTTGCATTGGTTATTGCCATAACAAAAGATCTTCCTGATGTAGAGGGAGACCGCAAGTTTCAGATATCAACATTTGCAACAAAACTTGGAGTTAGAAAGATTGCATTCCTGGGTTCTGGGCTTTTGCTGCTAAACTATGTTGGTTCTATATTCGCAGCAAGTTTCATGCCTCAGGCATTCAGGCGTAGCTTAATGATACCGACCCATACAATTTTGGCTCTGAGTTTAATTTTCCAGACTTGGGTGCTCGAGCAAGCAAATTACACCAAGGAAGCAATTGCCGGCTACTACAGATTTATATGGAATCTCTTCTATGCTGAGTATATCATTTTTCCTTTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 map00130

Pfam Domains

Protein Families

UbiA

Protein Analysis

389

Amino Acids

43.21

Weight (kDa)

9.83

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11945 AT3G11945
fragaria_vesca	FvH4_6g21320 FvH4_6g21320 FvH4_6g21320 FvH4_6g21320
malus_domestica	MD12G1050300.v1.1 MD14G1048800.v1.1
prunus_persica	Prupe.7G086500_v2.0.a1 Prupe.7G086500_v2.0.a1
pyrus_communis	pycom12g04460 pycom14g03990
rosa_chinensis	RchiOBHm_Chr3g0477931
rosa_laevigata	RLG00000023679
rosa_multiflora	Rmu_sc0005991.1_g000013 Rmu_sc0022989.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403590
rosa_rugosa	Rorug03G0163900
rosa_samantha	Rh3AG214700 Rh3BG248300 Rh3CG242300 Rh3DG241700
rosa_wichuraiana	Rw3G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
Acc65I	GGTACC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	641
AciI	CCGC	1 cut(s)	874
AclWI	GGATC	2 cut(s)	242, 250
AcsI	RAATTY	2 cut(s)	205, 264
AfaI	GTAC	3 cut(s)	149, 643, 714
AfiI	CCNNNNNNNGG	1 cut(s)	1063
AgsI	TTSAA	3 cut(s)	84, 233, 773
AjnI	CCWGG	1 cut(s)	930
AluBI	AGCT	7 cut(s)	7, 44, 171, 236, 758, 786, 1011
AluI	AGCT	7 cut(s)	7, 44, 171, 236, 758, 786, 1011
Alw21I	GWGCWC	3 cut(s)	9, 788, 1071
Alw26I	GTCTC	2 cut(s)	393, 864
AlwI	GGATC	2 cut(s)	242, 250
Ama87I	CYCGRG	1 cut(s)	1070
AoxI	GGCC	4 cut(s)	216, 302, 571, 599
ApeKI	GCWGC	6 cut(s)	236, 512, 689, 758, 949, 977
ApoI	RAATTY	2 cut(s)	205, 264
Asp700I	GAANNNNTTC	1 cut(s)	1130
Asp718I	GGTACC	1 cut(s)	641
AspS9I	GGNCC	3 cut(s)	216, 520, 599
AsuHPI	GGTGA	1 cut(s)	358
AvaI	CYCGRG	1 cut(s)	1070
AvaII	GGWCC	1 cut(s)	520
AxyI	CCTNAGG	2 cut(s)	299, 993
BanI	GGYRCC	1 cut(s)	641
BanII	GRGCYC	3 cut(s)	9, 162, 788
Bbv12I	GWGCWC	3 cut(s)	9, 788, 1071
BbvI	GCAGC	6 cut(s)	223, 499, 701, 745, 936, 989
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	932
BcoDI	GTCTC	2 cut(s)	393, 864
BfaI	CTAG	3 cut(s)	351, 753, 1165
BfmI	CTRYAG	4 cut(s)	163, 220, 513, 1111
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	6 cut(s)	237, 513, 690, 759, 950, 978
BlsI	GCNGC	6 cut(s)	238, 514, 691, 760, 951, 979
Bme1390I	CCNGG	1 cut(s)	932
Bme18I	GGWCC	1 cut(s)	520
BmeT110I	CYCGRG	1 cut(s)	1070
BmgT120I	GGNCC	3 cut(s)	216, 520, 599
BmiI	GGNNCC	2 cut(s)	521, 643
BmrFI	CCNGG	1 cut(s)	932
BmsI	GCATC	2 cut(s)	271, 462
BplI	GAGNNNNNCTC	2 cut(s)	770, 802
BsaAI	YACGTR	1 cut(s)	317
BsaI	GGTCTC	2 cut(s)	393, 864
BsaJI	CCNNGG	6 cut(s)	32, 637, 763, 792, 931, 1089
Bsc4I	CCNNNNNNNGG	1 cut(s)	1063
Bse118I	RCCGGY	1 cut(s)	1103
Bse1I	ACTGG	2 cut(s)	251, 574
Bse21I	CCTNAGG	2 cut(s)	299, 993
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	932
BseDI	CCNNGG	6 cut(s)	32, 637, 763, 792, 931, 1089
BseLI	CCNNNNNNNGG	1 cut(s)	1063
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	4 cut(s)	290, 1007, 1034, 1131
BseNI	ACTGG	2 cut(s)	251, 574
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	6 cut(s)	223, 499, 701, 745, 936, 989
BshFI	GGCC	4 cut(s)	218, 304, 573, 601
BshNI	GGYRCC	1 cut(s)	641
BsiHKAI	GWGCWC	3 cut(s)	9, 788, 1071
BsiHKCI	CYCGRG	1 cut(s)	1070
BsiSI	CCGG	1 cut(s)	1104
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	1063
BsmAI	GTCTC	2 cut(s)	393, 864
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	3 cut(s)	404, 926, 998
BsnI	GGCC	4 cut(s)	218, 304, 573, 601
Bso31I	GGTCTC	2 cut(s)	393, 864
BsoBI	CYCGRG	1 cut(s)	1070
Bsp1286I	GDGCHC	4 cut(s)	9, 162, 788, 1071
Bsp143I	GATC	3 cut(s)	242, 247, 850
BspACI	CCGC	1 cut(s)	874
BspANI	GGCC	4 cut(s)	218, 304, 573, 601
BspCNI	CTCAG	4 cut(s)	291, 1006, 1035, 1132
BspLI	GGNNCC	2 cut(s)	521, 643
BspMAI	CTGCAG	2 cut(s)	224, 517
BspPI	GGATC	2 cut(s)	242, 250
BspT107I	GGYRCC	1 cut(s)	641
BspTNI	GGTCTC	2 cut(s)	393, 864
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	1103
BsrI	ACTGG	2 cut(s)	251, 574
BssAI	RCCGGY	1 cut(s)	1103
BssECI	CCNNGG	6 cut(s)	32, 637, 763, 792, 931, 1089
BssMI	GATC	3 cut(s)	242, 247, 850
BssT1I	CCWWGG	3 cut(s)	637, 763, 1089
Bst2UI	CCWGG	1 cut(s)	932
Bst4CI	ACNGT	5 cut(s)	36, 191, 325, 623, 712
Bst6I	CTCTTC	4 cut(s)	76, 191, 668, 1136
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	4 cut(s)	220, 788, 1077, 1105
BstDEI	CTNAG	4 cut(s)	299, 993, 1043, 1140
BstDSI	CCRYGG	2 cut(s)	32, 792
BstKTI	GATC	3 cut(s)	245, 250, 853
BstMAI	GTCTC	2 cut(s)	393, 864
BstMBI	GATC	3 cut(s)	242, 247, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	755, 949
BstNI	CCWGG	1 cut(s)	932
BstSCI	CCNGG	1 cut(s)	930
BstSFI	CTRYAG	4 cut(s)	163, 220, 513, 1111
BstV1I	GCAGC	6 cut(s)	223, 499, 701, 745, 936, 989
BstX2I	RGATCY	2 cut(s)	242, 850
BstYI	RGATCY	2 cut(s)	242, 850
Bsu36I	CCTNAGG	2 cut(s)	299, 993
BsuRI	GGCC	4 cut(s)	218, 304, 573, 601
BtgI	CCRYGG	2 cut(s)	32, 792
Cac8I	GCNNGC	4 cut(s)	220, 788, 1077, 1105
Cfr10I	RCCGGY	1 cut(s)	1103
Cfr13I	GGNCC	3 cut(s)	216, 520, 599
Csp6I	GTAC	3 cut(s)	148, 642, 713
CspCI	CAANNNNNGTGG	2 cut(s)	761, 796
CviAII	CATG	2 cut(s)	540, 988
CviQI	GTAC	3 cut(s)	148, 642, 713
DdeI	CTNAG	4 cut(s)	299, 993, 1043, 1140
DpnI	GATC	3 cut(s)	244, 249, 852
DpnII	GATC	3 cut(s)	242, 247, 850
DraI	TTTAAA	1 cut(s)	277
Eam1104I	CTCTTC	4 cut(s)	76, 191, 668, 1136
EarI	CTCTTC	4 cut(s)	76, 191, 668, 1136
Ecl136II	GAGCTC	2 cut(s)	7, 786
Eco130I	CCWWGG	3 cut(s)	637, 763, 1089
Eco147I	AGGCCT	1 cut(s)	304
Eco24I	GRGCYC	3 cut(s)	9, 162, 788
Eco31I	GGTCTC	2 cut(s)	393, 864
Eco32I	GATATC	2 cut(s)	472, 888
Eco47I	GGWCC	1 cut(s)	520
Eco53kI	GAGCTC	2 cut(s)	7, 786
Eco81I	CCTNAGG	2 cut(s)	299, 993
Eco88I	CYCGRG	1 cut(s)	1070
EcoICRI	GAGCTC	2 cut(s)	7, 786
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	930
EcoRV	GATATC	2 cut(s)	472, 888
EcoT14I	CCWWGG	3 cut(s)	637, 763, 1089
EcoT38I	GRGCYC	3 cut(s)	9, 162, 788
ErhI	CCWWGG	3 cut(s)	637, 763, 1089
FaeI	CATG	2 cut(s)	543, 991
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	2 cut(s)	539, 987
Fnu4HI	GCNGC	6 cut(s)	237, 513, 690, 759, 950, 978
FriOI	GRGCYC	3 cut(s)	9, 162, 788
Fsp4HI	GCNGC	6 cut(s)	237, 513, 690, 759, 950, 978
FspBI	CTAG	3 cut(s)	351, 753, 1165
GluI	GCNGC	6 cut(s)	237, 513, 690, 759, 950, 978
HaeIII	GGCC	4 cut(s)	218, 304, 573, 601
HapII	CCGG	1 cut(s)	1104
Hin1II	CATG	2 cut(s)	543, 991
HinfI	GANTC	2 cut(s)	294, 1126
HpaII	CCGG	1 cut(s)	1104
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	6 cut(s)	195, 247, 271, 587, 885, 1044
Hpy188III	TCNNGA	3 cut(s)	298, 857, 1057
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	2 cut(s)	90, 734
HpyCH4III	ACNGT	5 cut(s)	36, 191, 325, 623, 712
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	8 cut(s)	60, 135, 222, 515, 689, 827, 899, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	755, 949
HpyF3I	CTNAG	4 cut(s)	299, 993, 1043, 1140
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	543, 991
KpnI	GGTACC	1 cut(s)	645
KroI	GCCGGC	1 cut(s)	1103
KroNI	GCCGGC	1 cut(s)	1105
Kzo9I	GATC	3 cut(s)	242, 247, 850
LmnI	GCTCC	3 cut(s)	4, 22, 783
Lsp1109I	GCAGC	6 cut(s)	223, 499, 701, 745, 936, 989
LweI	GCATC	2 cut(s)	271, 462
MaeI	CTAG	3 cut(s)	351, 753, 1165
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	4 cut(s)	346, 440, 565, 814
MalI	GATC	3 cut(s)	244, 249, 852
MboI	GATC	3 cut(s)	242, 247, 850
MboII	GAAGA	6 cut(s)	18, 63, 208, 685, 845, 1123
MfeI	CAATTG	2 cut(s)	153, 1098
MflI	RGATCY	2 cut(s)	242, 850
MhlI	GDGCHC	4 cut(s)	9, 162, 788, 1071
MmeI	TCCRAC	2 cut(s)	269, 565
MroNI	GCCGGC	1 cut(s)	1103
MroXI	GAANNNNTTC	1 cut(s)	1130
MseI	TTAA	7 cut(s)	93, 276, 399, 531, 729, 1013, 1049
MspI	CCGG	1 cut(s)	1104
MspR9I	CCNGG	1 cut(s)	932
MunI	CAATTG	2 cut(s)	153, 1098
Mva1269I	GAATGC	3 cut(s)	404, 926, 998
MvaI	CCWGG	1 cut(s)	932
MwoI	GCNNNNNNNGC	2 cut(s)	755, 949
NaeI	GCCGGC	1 cut(s)	1105
NdeII	GATC	3 cut(s)	242, 247, 850
NgoMIV	GCCGGC	1 cut(s)	1103
NlaIII	CATG	2 cut(s)	543, 991
NlaIV	GGNNCC	2 cut(s)	521, 643
NmuCI	GTSAC	2 cut(s)	346, 565
PaeR7I	CTCGAG	1 cut(s)	1070
PceI	AGGCCT	1 cut(s)	304
PctI	GAATGC	3 cut(s)	404, 926, 998
PdiI	GCCGGC	1 cut(s)	1105
PdmI	GAANNNNTTC	1 cut(s)	1130
PfeI	GAWTC	2 cut(s)	294, 1126
PkrI	GCNGC	6 cut(s)	238, 514, 691, 760, 951, 979
Ppu21I	YACGTR	1 cut(s)	317
PpuMI	RGGWCCY	1 cut(s)	520
PsiI	TTATAA	1 cut(s)	701
Psp124BI	GAGCTC	2 cut(s)	9, 788
Psp5II	RGGWCCY	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	930
PspGI	CCWGG	1 cut(s)	930
PspN4I	GGNNCC	2 cut(s)	521, 643
PspPI	GGNCC	3 cut(s)	216, 520, 599
PspPPI	RGGWCCY	1 cut(s)	520
PspXI	VCTCGAGB	1 cut(s)	1070
PstI	CTGCAG	2 cut(s)	224, 517
PsuI	RGATCY	2 cut(s)	242, 850
RsaI	GTAC	3 cut(s)	149, 643, 714
RsaNI	GTAC	3 cut(s)	148, 642, 713
SacI	GAGCTC	2 cut(s)	9, 788
SaqAI	TTAA	7 cut(s)	93, 276, 399, 531, 729, 1013, 1049
SatI	GCNGC	6 cut(s)	237, 513, 690, 759, 950, 978
Sau3AI	GATC	3 cut(s)	242, 247, 850
Sau96I	GGNCC	3 cut(s)	216, 520, 599
ScrFI	CCNGG	1 cut(s)	932
SduI	GDGCHC	4 cut(s)	9, 162, 788, 1071
SfaNI	GCATC	2 cut(s)	271, 462
SfcI	CTRYAG	4 cut(s)	163, 220, 513, 1111
Sfr274I	CTCGAG	1 cut(s)	1070
SinI	GGWCC	1 cut(s)	520
SlaI	CTCGAG	1 cut(s)	1070
SmlI	CTYRAG	1 cut(s)	1070
SmoI	CTYRAG	1 cut(s)	1070
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	1 cut(s)	874
SspMI	CTAG	3 cut(s)	351, 753, 1165
SstI	GAGCTC	2 cut(s)	9, 788
StuI	AGGCCT	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	930
StyI	CCWWGG	3 cut(s)	637, 763, 1089
TaaI	ACNGT	5 cut(s)	36, 191, 325, 623, 712
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	1071
TatI	WGTACW	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	294, 1126
Tru1I	TTAA	7 cut(s)	93, 276, 399, 531, 729, 1013, 1049
Tru9I	TTAA	7 cut(s)	93, 276, 399, 531, 729, 1013, 1049
TseFI	GTSAC	2 cut(s)	346, 565
TseI	GCWGC	6 cut(s)	236, 512, 689, 758, 949, 977
Tsp45I	GTSAC	2 cut(s)	346, 565
TspDTI	ATGAA	5 cut(s)	595, 605, 686, 976, 1150
TspGWI	ACGGA	1 cut(s)	651
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	2 cut(s)	205, 264
XhoI	CTCGAG	1 cut(s)	1070
XmnI	GAANNNNTTC	1 cut(s)	1130
XspI	CTAG	3 cut(s)	351, 753, 1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.