Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008712

Physical Location & Seq

Genomic Coordinates Forward (+)

4340183 .. 4342282

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCCAATTTGGGGATGTAGCTCTCTTTGCATGCAGCAGAGGTTCGAACCCCGGCAGCGGAAAACTTCTTTTTTTTTTTTTTTTATCACAATTAACAGTACAGTAAAATCATTGAAAACAAATGGCCACGTTGGGGAGAACCGATCCTGCTCTCTCCCTCCTCTCTCTCTCTCTCTCTCCCCAGACATGGAGCTTTCTTCTCTGCGGTTCCCAGCTATAACACCTCACTGCAGCACCTCATCCTCTTTGCCACCAATTTCTGTTCGGTCCACCACTACAAAATCGGTTGCTTTTCTCTCAAGCTGCAGGACAAAGTTGTACTCAATTGGGGTGTCCAGAAGCAGCTCCAAATCCTTGCTTAGCTGCCAGAAGAGGCGAAATTCCATCTGGGCCTGCAGTCAAGTTGGAGCTGCTGAATCTGATCCAGTATTGACCAAAGTTTCAGATTTTAAAGATGCTTGTTGGAGATTCATGAGGCCCCATACCGTACATGGGACAGTTCTGGGGTCTACTGCTTTGGTGGCAAGAGCATTGATTGAGAACTCCAATCTGATAAAGTGGTCTCTGCTGTTTAAGGCATTCTCTGGTCTTTTTGCTCTACCATGTGGGAATAGTTATATGGTTGGCATCAATCAGATTTATGATATCAAAATTGACAAGGTAAACAAACCTTATTTACCTATCGCTGCTGGGGATCTTTCAGTTAAATCAGCATGGCTCTTGGTGGTATTTTTTGCGGTGACGGCTTGTCGATCGTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 map00130

Pfam Domains

Protein Families

UbiA

Protein Analysis

255

Amino Acids

27.97

Weight (kDa)

9.72

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11945 AT3G11945
fragaria_vesca	FvH4_6g21320 FvH4_6g21320 FvH4_6g21320 FvH4_6g21320
malus_domestica	MD12G1050300.v1.1 MD14G1048800.v1.1
prunus_persica	Prupe.7G086500_v2.0.a1 Prupe.7G086500_v2.0.a1
pyrus_communis	pycom12g04460 pycom14g03990
rosa_chinensis	RchiOBHm_Chr3g0477931
rosa_laevigata	RLG00000023679
rosa_multiflora	Rmu_sc0005991.1_g000013 Rmu_sc0022989.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403590
rosa_rugosa	Rorug03G0163900
rosa_samantha	Rh3AG214700 Rh3BG248300 Rh3CG242300 Rh3DG241700
rosa_wichuraiana	Rw3G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	509
AciI	CCGC	3 cut(s)	58, 205, 737
AclWI	GGATC	3 cut(s)	138, 416, 702
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	379
AfaI	GTAC	3 cut(s)	100, 320, 489
AfiI	CCNNNNNNNGG	5 cut(s)	11, 57, 133, 187, 492
AgsI	TTSAA	1 cut(s)	115
AhdI	GACNNNNNGTC	1 cut(s)	747
AluBI	AGCT	7 cut(s)	21, 193, 215, 303, 345, 363, 410
AluI	AGCT	7 cut(s)	21, 193, 215, 303, 345, 363, 410
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	3 cut(s)	138, 416, 702
AoxI	GGCC	3 cut(s)	124, 390, 476
ApeKI	GCWGC	8 cut(s)	34, 55, 231, 303, 342, 363, 410, 686
ApoI	RAATTY	1 cut(s)	379
AspS9I	GGNCC	3 cut(s)	267, 390, 477
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	751
AsuII	TTCGAA	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	126
BbvI	GCAGC	8 cut(s)	46, 67, 243, 290, 350, 354, 397, 673
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	759
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	567
BfmI	CTRYAG	3 cut(s)	229, 304, 394
BisI	GCNGC	8 cut(s)	35, 56, 232, 304, 343, 364, 411, 687
BlpI	GCTNAGC	1 cut(s)	359
BlsI	GCNGC	8 cut(s)	36, 57, 233, 305, 344, 365, 412, 688
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	267
BmeRI	GACNNNNNGTC	1 cut(s)	747
BmgT120I	GGNCC	3 cut(s)	267, 390, 477
BmiI	GGNNCC	2 cut(s)	209, 479
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	2 cut(s)	445, 636
Bpu1102I	GCTNAGC	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	5 cut(s)	11, 57, 133, 187, 492
Bse1I	ACTGG	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	2 cut(s)	20, 239
BseLI	CCNNNNNNNGG	5 cut(s)	11, 57, 133, 187, 492
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	8 cut(s)	46, 67, 243, 290, 350, 354, 397, 673
BseYI	CCCAGC	2 cut(s)	211, 689
Bsh1285I	CGRYCG	1 cut(s)	755
BshFI	GGCC	3 cut(s)	126, 392, 478
BsiEI	CGRYCG	1 cut(s)	755
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	5 cut(s)	11, 57, 133, 187, 492
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	508
BsmI	GAATGC	1 cut(s)	578
BsnI	GGCC	3 cut(s)	126, 392, 478
Bso31I	GGTCTC	1 cut(s)	567
Bsp119I	TTCGAA	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	143, 421, 694, 752
Bsp1720I	GCTNAGC	1 cut(s)	359
BspACI	CCGC	3 cut(s)	58, 205, 737
BspANI	GGCC	3 cut(s)	126, 392, 478
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	2 cut(s)	209, 479
BspMAI	CTGCAG	3 cut(s)	233, 308, 398
BspPI	GGATC	3 cut(s)	138, 416, 702
BspT104I	TTCGAA	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	4 cut(s)	143, 421, 694, 752
Bst4CI	ACNGT	4 cut(s)	98, 103, 487, 499
Bst6I	CTCTTC	1 cut(s)	365
BstBI	TTCGAA	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	32, 394
BstDEI	CTNAG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	20, 239
BstKTI	GATC	4 cut(s)	146, 424, 697, 755
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	4 cut(s)	143, 421, 694, 752
BstMCI	CGRYCG	1 cut(s)	755
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 521, 743
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	3 cut(s)	229, 304, 394
BstV1I	GCAGC	8 cut(s)	46, 67, 243, 290, 350, 354, 397, 673
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	3 cut(s)	126, 392, 478
BtsCI	GGATG	2 cut(s)	20, 239
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	32, 394
CciI	TCATGA	1 cut(s)	471
Cfr13I	GGNCC	3 cut(s)	267, 390, 477
Csp6I	GTAC	3 cut(s)	99, 319, 488
CviAII	CATG	6 cut(s)	31, 187, 472, 491, 603, 714
CviQI	GTAC	3 cut(s)	99, 319, 488
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	4 cut(s)	145, 423, 696, 754
DpnII	GATC	4 cut(s)	143, 421, 694, 752
DraI	TTTAAA	1 cut(s)	451
DriI	GACNNNNNGTC	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	365
Eam1105I	GACNNNNNGTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	365
Eco31I	GGTCTC	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	267
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	646
FaeI	CATG	6 cut(s)	34, 190, 475, 494, 606, 717
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	6 cut(s)	30, 186, 471, 490, 602, 713
FblI	GTMKAC	1 cut(s)	509
Fnu4HI	GCNGC	8 cut(s)	35, 56, 232, 304, 343, 364, 411, 687
FokI	GGATG	2 cut(s)	27, 226
Fsp4HI	GCNGC	8 cut(s)	35, 56, 232, 304, 343, 364, 411, 687
GluI	GCNGC	8 cut(s)	35, 56, 232, 304, 343, 364, 411, 687
GsaI	CCCAGC	2 cut(s)	215, 693
HaeIII	GGCC	3 cut(s)	126, 392, 478
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	6 cut(s)	34, 190, 475, 494, 606, 717
HinfI	GANTC	2 cut(s)	416, 468
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	751
Hpy166II	GTNNAC	3 cut(s)	270, 510, 664
Hpy188I	TCNGA	4 cut(s)	421, 445, 552, 636
Hpy188III	TCNNGA	2 cut(s)	336, 472
Hpy8I	GTNNAC	3 cut(s)	270, 510, 664
HpyCH4III	ACNGT	4 cut(s)	98, 103, 487, 499
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	5 cut(s)	30, 34, 231, 306, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 521, 743
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	6 cut(s)	34, 190, 475, 494, 606, 717
Kzo9I	GATC	4 cut(s)	143, 421, 694, 752
LmnI	GCTCC	3 cut(s)	190, 350, 407
Lsp1109I	GCAGC	8 cut(s)	46, 67, 243, 290, 350, 354, 397, 673
LweI	GCATC	2 cut(s)	445, 636
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	4 cut(s)	145, 423, 696, 754
MboI	GATC	4 cut(s)	143, 421, 694, 752
MboII	GAAGA	2 cut(s)	189, 382
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	694
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	6 cut(s)	6, 90, 255, 324, 379, 651
MluNI	TGGCCA	1 cut(s)	126
MmeI	TCCRAC	3 cut(s)	385, 443, 738
MnlI	CCTC	8 cut(s)	33, 168, 171, 234, 247, 253, 366, 468
Mox20I	TGGCCA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	4 cut(s)	93, 450, 573, 705
Msp20I	TGGCCA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	578
MwoI	GCNNNNNNNGC	3 cut(s)	27, 521, 743
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	4 cut(s)	143, 421, 694, 752
NlaIII	CATG	6 cut(s)	34, 190, 475, 494, 606, 717
NlaIV	GGNNCC	2 cut(s)	209, 479
NmuCI	GTSAC	1 cut(s)	739
NspI	RCATGY	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	45
PaeI	GCATGC	1 cut(s)	34
PagI	TCATGA	1 cut(s)	471
PctI	GAATGC	1 cut(s)	578
PfeI	GAWTC	2 cut(s)	416, 468
PkrI	GCNGC	8 cut(s)	36, 57, 233, 305, 344, 365, 412, 688
Ple19I	CGATCG	1 cut(s)	755
PspFI	CCCAGC	2 cut(s)	211, 689
PspN4I	GGNNCC	2 cut(s)	209, 479
PspPI	GGNCC	3 cut(s)	267, 390, 477
PstI	CTGCAG	3 cut(s)	233, 308, 398
PsuI	RGATCY	1 cut(s)	694
PvuI	CGATCG	1 cut(s)	755
RsaI	GTAC	3 cut(s)	100, 320, 489
RsaNI	GTAC	3 cut(s)	99, 319, 488
SaqAI	TTAA	4 cut(s)	93, 450, 573, 705
SatI	GCNGC	8 cut(s)	35, 56, 232, 304, 343, 364, 411, 687
Sau3AI	GATC	4 cut(s)	143, 421, 694, 752
Sau96I	GGNCC	3 cut(s)	267, 390, 477
ScrFI	CCNGG	1 cut(s)	52
SfaNI	GCATC	2 cut(s)	445, 636
SfcI	CTRYAG	3 cut(s)	229, 304, 394
SfuI	TTCGAA	1 cut(s)	45
SinI	GGWCC	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
SphI	GCATGC	1 cut(s)	34
Sse9I	AATT	6 cut(s)	6, 90, 255, 324, 379, 651
SsiI	CCGC	3 cut(s)	58, 205, 737
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	4 cut(s)	98, 103, 487, 499
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	45, 751
TaqII	GACCGA	1 cut(s)	255
TasI	AATT	6 cut(s)	6, 90, 255, 324, 379, 651
TatI	WGTACW	2 cut(s)	98, 318
TfiI	GAWTC	2 cut(s)	416, 468
Tru1I	TTAA	4 cut(s)	93, 450, 573, 705
Tru9I	TTAA	4 cut(s)	93, 450, 573, 705
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	739
TseI	GCWGC	8 cut(s)	34, 55, 231, 303, 342, 363, 410, 686
Tsp45I	GTSAC	1 cut(s)	739
TspDTI	ATGAA	1 cut(s)	460
TspRI	CASTG	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.