MD14G1048800.v1.1

Homogentisate phytyltransferase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0008712
Physical Location & Seq
Forward (+)
4624424 .. 4629383
4960 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1048800.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGGATCTCTCATTCGCTCCCTCCTCTTCTCCGCGGTTCCCAGCTATAAGCCCTCACTGCAGCACCTCCTCCTATATTCCTCCAATTTCTGCTAATCCCACCACTGCAAAATCAGCTGCTTTTCTCTCAAGCTGCAGGACAAACTTGTACTCAATTGGGCTGTCCAGAAGCTGCTCCAAATCTTTGCTCAGCTGCCGGAAGAAGCGAAATTCCATCTGGGCCTGCAGTCAAGTTGGAGCTGCTGAATCTAATCCAGTATTGACCAAAGTCTCAGATTTTAAAGATGCTTGTTGGCGATTCCTCAGGCCCCATACCATACGTGGGACAGTTCTCGGGTCTACTGCTTTGGTGACAAGAGCTTTGATTGAGAACTCCAATTTGATAAAGTGGTCTCTGCTGTTTAAGGCATTCTCTGGTCTTTTTGCGCTACTATGTGGGAATGGTTATATAGTTGGCATCAATCAGATTTACGATATCAAAATTGACAAGGTAAACAAACCTTATTTACCTATCGCTGCAGGGGATCTTTCAGTTAAATCAGCATGGCTCTTGGTGGTATTTTTTGCGGTGACTGGCTTGTTGATTGTTGGACTGAACTTTGGGGCATTCATTACTTCTCTCTACTGTCTTGGTCTTTTCCTTGGCACCATATATTCTGTTCCTCCGCTTAGAATGAAGAGATTTCCTGTTGCAGCTTTTCTTATAATTGCCACGGTAAGGGGTTTCCTTCTCAATTTTGGTGTATATTATGCCACTAGAGCTGCCCTTGCGCTTCAATTTGAGTGGAGCTCGGCCGTTGCTTTTATCACCACTTTTGTAACATTGTTTGCTTTGGTTATTGCGATAACAAAAGACCTTCCGGATGTAGAGGGGGACCGCAAGTTTGAAATATCAACATTTGCAACAAAACTCGGAGTTAGAAACATTGCGTTTCTTGGTTCTGGGCTTCTGCTACTAAATTATGTTGGTTCCATATTCGCAGCAAGTTTAATGCCGGAGGCATTCAGACGTAGCTTAATGATACCCATGCATGCAATCTTGGCACTGAGTTTAGTTTTCCAGACTTGGGTGCTCGAGCAAGCAAATTACACCAAGGAAGCAATTGCCAGCTACTACAGATTTATATGGAATCTCTTCTATGCCGAGTATCTCCTTTTCCCCTTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
UbiA

Protein Analysis

390

Amino Acids

42.9

Weight (kDa)

9.62

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 114 - 378 1.2e-35 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
AccB1I GGYRCC 1 cut(s) 644
AccI GTMKAC 1 cut(s) 338
AccII CGCG 1 cut(s) 34
AccIII TCCGGA 1 cut(s) 859
AciI CCGC 5 cut(s) 32, 34, 566, 665, 877
AclWI GGATC 2 cut(s) 12, 531
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 1 cut(s) 208
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 3 cut(s) 321, 717, 1066
AgsI TTSAA 2 cut(s) 776, 887
Alw21I GWGCWC 2 cut(s) 791, 1074
Alw26I GTCTC 2 cut(s) 274, 396
AlwI GGATC 2 cut(s) 12, 531
AlwNI CAGNNNCTG 1 cut(s) 171
Ama87I CYCGRG 2 cut(s) 332, 1073
Aor13HI TCCGGA 1 cut(s) 859
AoxI GGCC 3 cut(s) 219, 305, 792
ApoI RAATTY 1 cut(s) 208
ArsI GACNNNNNNTTYG 4 cut(s) 343, 375, 866, 898
Asp700I GAANNNNTTC 1 cut(s) 1133
AspLEI GCGC 2 cut(s) 427, 772
AspS9I GGNCC 3 cut(s) 219, 306, 874
AsuHPI GGTGA 3 cut(s) 361, 580, 799
AvaI CYCGRG 2 cut(s) 332, 1073
AvaII GGWCC 1 cut(s) 874
AxyI CCTNAGG 1 cut(s) 302
BanI GGYRCC 1 cut(s) 644
BanII GRGCYC 1 cut(s) 791
Bbv12I GWGCWC 2 cut(s) 791, 1074
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 779
BcoDI GTCTC 2 cut(s) 274, 396
BfaI CTAG 2 cut(s) 756, 1168
BfmI CTRYAG 5 cut(s) 58, 133, 223, 516, 1114
BlpI GCTNAGC 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 874
BmeT110I CYCGRG 2 cut(s) 332, 1073
BmgT120I GGNCC 3 cut(s) 219, 306, 874
BmiI GGNNCC 5 cut(s) 38, 308, 646, 875, 970
BmsI GCATC 2 cut(s) 274, 465
BoxI GACNNNNGTC 1 cut(s) 266
BplI GAGNNNNNCTC 2 cut(s) 773, 805
Bpu1102I GCTNAGC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 112
BsaAI YACGTR 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 4 cut(s) 32, 640, 711, 1092
BsaWI WCCGGW 1 cut(s) 859
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 717, 1066
Bse1I ACTGG 2 cut(s) 254, 577
Bse21I CCTNAGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 924
BseAI TCCGGA 1 cut(s) 859
BseDI CCNNGG 4 cut(s) 32, 640, 711, 1092
BseGI GGATG 1 cut(s) 868
BseLI CCNNNNNNNGG 3 cut(s) 321, 717, 1066
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 4 cut(s) 202, 285, 316, 1037
BseNI ACTGG 2 cut(s) 254, 577
BseRI GAGGAG 2 cut(s) 13, 58
BseX3I CGGCCG 1 cut(s) 792
BseYI CCCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 795
BshFI GGCC 3 cut(s) 221, 307, 794
BshNI GGYRCC 1 cut(s) 644
BsiEI CGRYCG 1 cut(s) 795
BsiHKAI GWGCWC 2 cut(s) 791, 1074
BsiHKCI CYCGRG 2 cut(s) 332, 1073
BsiSI CCGG 3 cut(s) 196, 860, 995
BslFI GGGAC 2 cut(s) 337, 887
BslI CCNNNNNNNGG 3 cut(s) 321, 717, 1066
BsmAI GTCTC 2 cut(s) 274, 396
BsmFI GGGAC 2 cut(s) 337, 887
BsmI GAATGC 3 cut(s) 407, 605, 1001
BsnI GGCC 3 cut(s) 221, 307, 794
Bso31I GGTCTC 1 cut(s) 396
BsoBI CYCGRG 2 cut(s) 332, 1073
Bsp1286I GDGCHC 2 cut(s) 791, 1074
Bsp13I TCCGGA 1 cut(s) 859
Bsp143I GATC 2 cut(s) 4, 523
Bsp1720I GCTNAGC 1 cut(s) 188
BspACI CCGC 5 cut(s) 32, 34, 566, 665, 877
BspANI GGCC 3 cut(s) 221, 307, 794
BspCNI CTCAG 4 cut(s) 201, 284, 315, 1038
BspEI TCCGGA 1 cut(s) 859
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 5 cut(s) 38, 308, 646, 875, 970
BspMAI CTGCAG 4 cut(s) 62, 137, 227, 520
BspPI GGATC 2 cut(s) 12, 531
BspT107I GGYRCC 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 924
BsrI ACTGG 2 cut(s) 254, 577
BssECI CCNNGG 4 cut(s) 32, 640, 711, 1092
BssMI GATC 2 cut(s) 4, 523
BssT1I CCWWGG 2 cut(s) 640, 1092
Bst4CI ACNGT 3 cut(s) 328, 626, 715
Bst6I CTCTTC 3 cut(s) 31, 671, 1139
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 4 cut(s) 223, 1032, 1080, 1108
BstDEI CTNAG 5 cut(s) 188, 271, 302, 668, 1046
BstDSI CCRYGG 2 cut(s) 32, 711
BstF5I GGATG 1 cut(s) 868
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 2 cut(s) 427, 772
BstKTI GATC 2 cut(s) 7, 526
BstMAI GTCTC 2 cut(s) 274, 396
BstMBI GATC 2 cut(s) 4, 523
BstMCI CGRYCG 1 cut(s) 795
BstMWI GCNNNNNNNGC 5 cut(s) 57, 113, 758, 767, 1040
BstNSI RCATGY 1 cut(s) 1034
BstPAI GACNNNNGTC 1 cut(s) 266
BstSFI CTRYAG 5 cut(s) 58, 133, 223, 516, 1114
BstUI CGCG 1 cut(s) 34
BstX2I RGATCY 2 cut(s) 4, 523
BstYI RGATCY 2 cut(s) 4, 523
BstZI CGGCCG 1 cut(s) 792
Bsu36I CCTNAGG 1 cut(s) 302
BsuRI GGCC 3 cut(s) 221, 307, 794
BtgI CCRYGG 2 cut(s) 32, 711
BtsCI GGATG 1 cut(s) 868
BtsI GCAGTG 2 cut(s) 55, 102
BtsIMutI CAGTG 3 cut(s) 55, 102, 1043
Cac8I GCNNGC 4 cut(s) 223, 1032, 1080, 1108
CaiI CAGNNNCTG 1 cut(s) 171
CfoI GCGC 2 cut(s) 427, 772
Cfr13I GGNCC 3 cut(s) 219, 306, 874
Cfr42I CCGCGG 1 cut(s) 35
Csp6I GTAC 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 764, 799
CviAII CATG 3 cut(s) 543, 1027, 1031
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 5 cut(s) 188, 271, 302, 668, 1046
DpnI GATC 2 cut(s) 6, 525
DpnII GATC 2 cut(s) 4, 523
DraI TTTAAA 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 792
EagI CGGCCG 1 cut(s) 792
Eam1104I CTCTTC 3 cut(s) 31, 671, 1139
EarI CTCTTC 3 cut(s) 31, 671, 1139
Ecl136II GAGCTC 1 cut(s) 789
EclXI CGGCCG 1 cut(s) 792
Eco130I CCWWGG 2 cut(s) 640, 1092
Eco24I GRGCYC 1 cut(s) 791
Eco31I GGTCTC 1 cut(s) 396
Eco32I GATATC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 874
Eco52I CGGCCG 1 cut(s) 792
Eco53kI GAGCTC 1 cut(s) 789
Eco81I CCTNAGG 1 cut(s) 302
Eco88I CYCGRG 2 cut(s) 332, 1073
EcoICRI GAGCTC 1 cut(s) 789
EcoO109I RGGNCCY 1 cut(s) 306
EcoRV GATATC 1 cut(s) 475
EcoT14I CCWWGG 2 cut(s) 640, 1092
EcoT22I ATGCAT 1 cut(s) 1032
EcoT38I GRGCYC 1 cut(s) 791
ErhI CCWWGG 2 cut(s) 640, 1092
FaeI CATG 3 cut(s) 546, 1030, 1034
FaqI GGGAC 2 cut(s) 337, 887
FatI CATG 3 cut(s) 542, 1026, 1030
FblI GTMKAC 1 cut(s) 338
FokI GGATG 1 cut(s) 875
FriOI GRGCYC 1 cut(s) 791
FspBI CTAG 2 cut(s) 756, 1168
GlaI GCGC 2 cut(s) 426, 771
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 3 cut(s) 221, 307, 794
HapII CCGG 3 cut(s) 196, 860, 995
HhaI GCGC 2 cut(s) 427, 772
Hin1II CATG 3 cut(s) 546, 1030, 1034
Hin6I GCGC 2 cut(s) 425, 770
HinP1I GCGC 2 cut(s) 425, 770
HinfI GANTC 3 cut(s) 245, 297, 1129
HpaII CCGG 3 cut(s) 196, 860, 995
HphI GGTGA 3 cut(s) 361, 580, 799
Hpy166II GTNNAC 2 cut(s) 339, 493
Hpy188I TCNGA 4 cut(s) 274, 465, 914, 1007
Hpy188III TCNNGA 3 cut(s) 165, 860, 1060
Hpy8I GTNNAC 2 cut(s) 339, 493
HpyAV CCTTC 2 cut(s) 737, 866
HpyCH4III ACNGT 3 cut(s) 328, 626, 715
HpyCH4IV ACGT 2 cut(s) 319, 1009
HpyCH4V TGCA 9 cut(s) 60, 107, 135, 225, 518, 692, 902, 1030, 1034
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 113, 758, 767, 1040
HpyF3I CTNAG 5 cut(s) 188, 271, 302, 668, 1046
HpySE526I ACGT 2 cut(s) 319, 1009
Hsp92II CATG 3 cut(s) 546, 1030, 1034
HspAI GCGC 2 cut(s) 425, 770
Kpn2I TCCGGA 1 cut(s) 859
KspI CCGCGG 1 cut(s) 35
Kzo9I GATC 2 cut(s) 4, 523
LmnI GCTCC 4 cut(s) 22, 179, 236, 786
LweI GCATC 2 cut(s) 274, 465
MaeI CTAG 2 cut(s) 756, 1168
MaeII ACGT 2 cut(s) 319, 1009
MaeIII GTNAC 3 cut(s) 349, 568, 817
MalI GATC 2 cut(s) 6, 525
MboI GATC 2 cut(s) 4, 523
MboII GAAGA 4 cut(s) 18, 211, 688, 1126
MfeI CAATTG 2 cut(s) 153, 1101
MflI RGATCY 2 cut(s) 4, 523
MhlI GDGCHC 2 cut(s) 791, 1074
MmeI TCCRAC 2 cut(s) 214, 568
Mph1103I ATGCAT 1 cut(s) 1032
MroI TCCGGA 1 cut(s) 859
MroXI GAANNNNTTC 1 cut(s) 1133
MseI TTAA 5 cut(s) 279, 402, 534, 989, 1016
MspA1I CMGCKG 3 cut(s) 34, 116, 192
MspI CCGG 3 cut(s) 196, 860, 995
MunI CAATTG 2 cut(s) 153, 1101
Mva1269I GAATGC 3 cut(s) 407, 605, 1001
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 5 cut(s) 57, 113, 758, 767, 1040
NdeII GATC 2 cut(s) 4, 523
NlaIII CATG 3 cut(s) 546, 1030, 1034
NlaIV GGNNCC 5 cut(s) 38, 308, 646, 875, 970
NmeAIII GCCGAG 2 cut(s) 770, 1168
NmuCI GTSAC 2 cut(s) 349, 568
NsiI ATGCAT 1 cut(s) 1032
NspI RCATGY 1 cut(s) 1034
PaeI GCATGC 1 cut(s) 1034
PaeR7I CTCGAG 1 cut(s) 1073
PctI GAATGC 3 cut(s) 407, 605, 1001
PdmI GAANNNNTTC 1 cut(s) 1133
PfeI GAWTC 3 cut(s) 245, 297, 1129
Ppu21I YACGTR 1 cut(s) 320
PshAI GACNNNNGTC 1 cut(s) 266
PsiI TTATAA 1 cut(s) 704
Psp124BI GAGCTC 1 cut(s) 791
PspFI CCCAGC 1 cut(s) 40
PspN4I GGNNCC 5 cut(s) 38, 308, 646, 875, 970
PspPI GGNCC 3 cut(s) 219, 306, 874
PspXI VCTCGAGB 1 cut(s) 1073
PstI CTGCAG 4 cut(s) 62, 137, 227, 520
PstNI CAGNNNCTG 1 cut(s) 171
PsuI RGATCY 2 cut(s) 4, 523
PvuII CAGCTG 2 cut(s) 116, 192
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SacI GAGCTC 1 cut(s) 791
SacII CCGCGG 1 cut(s) 35
SaqAI TTAA 5 cut(s) 279, 402, 534, 989, 1016
Sau3AI GATC 2 cut(s) 4, 523
Sau96I GGNCC 3 cut(s) 219, 306, 874
SduI GDGCHC 2 cut(s) 791, 1074
SfaNI GCATC 2 cut(s) 274, 465
SfcI CTRYAG 5 cut(s) 58, 133, 223, 516, 1114
Sfr274I CTCGAG 1 cut(s) 1073
Sfr303I CCGCGG 1 cut(s) 35
SgrBI CCGCGG 1 cut(s) 35
SinI GGWCC 1 cut(s) 874
SlaI CTCGAG 1 cut(s) 1073
SmlI CTYRAG 2 cut(s) 127, 1073
SmoI CTYRAG 2 cut(s) 127, 1073
SphI GCATGC 1 cut(s) 1034
SsiI CCGC 5 cut(s) 32, 34, 566, 665, 877
SspMI CTAG 2 cut(s) 756, 1168
SstI GAGCTC 1 cut(s) 791
StyI CCWWGG 2 cut(s) 640, 1092
TaaI ACNGT 3 cut(s) 328, 626, 715
TaiI ACGT 2 cut(s) 322, 1012
TaqI TCGA 1 cut(s) 1074
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 3 cut(s) 245, 297, 1129
Tru1I TTAA 5 cut(s) 279, 402, 534, 989, 1016
Tru9I TTAA 5 cut(s) 279, 402, 534, 989, 1016
TscAI CASTG 3 cut(s) 62, 109, 1050
TseFI GTSAC 2 cut(s) 349, 568
Tsp45I GTSAC 2 cut(s) 349, 568
TspDTI ATGAA 3 cut(s) 598, 689, 1153
TspRI CASTG 3 cut(s) 62, 109, 1050
VpaK11BI GGWCC 1 cut(s) 874
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 1034
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XhoI CTCGAG 1 cut(s) 1073
XmiI GTMKAC 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 1133
XspI CTAG 2 cut(s) 756, 1168
Zsp2I ATGCAT 1 cut(s) 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.