Rh3BG248300

Homogentisate phytyltransferase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0008712
Physical Location & Seq
Forward (+)
23640501 .. 23644864
4364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG248300.1

Sequence Viewer

Length: 1179 bp
ATGGAGCTCTCATTCGCTCCTTCCCCCTCCTCCTCTCCGCTTCGGATTCGATTCTCTCATTGCACCACCACCAAACCCTCTTCTTTCCCTTCTTCAATTGTCACTACTACTTCCAAATCCCACTCCCTTTCTTCTCTCTCACAATGCACTCACAGCTCCAACTCATTTCGGCTCTACACATGCTCCACATCATCCCTCAACTTCCACAGGAGGCCAAATTCCATCTGGGCCTGCAGTCAAGCTGAAGCTGCTGGACCTGATCCGGTGCTGGCCAAAGTTTCGGATTTTAAAGATGCTTGTTGGAGATTCCTGAGGCCCCATACCATACGAGGAACAGCTCTTGGGTCAACTGCTTTGGTGACAAGGGCGTTGATTGAGAACTCCCATTTGATAAAGTGGACTTTGCTGTTTAAGGCATTCTCTGGTCTTTTTGCTCTACTGTGTGGGAATGGCTATATTGTTGGCATCAATCAGATATATGATATCAAAATTGACAAGGTAAACAAACCTTATTTACCCATAGCAGCAGGAGATCTCTCTGTAAAATCAGCATGGCTCTTGGTTATATTCTTTGCAGTTGCTGGCCTGTTGATTGTTGCATTCAACTTTGGGCCATTCATTACTTCTCTTTACAGTCTTGGTCTTTTCCTTGGCACCATCTATTCTGTTCCTCCATTTAGAATGAAGAGATTTCCTGTTGCGGCATTTCTTATAATTGCCACGGTTCGGGGTTTCCTTCTTAATTTTGGTGTATATTATTCCACTAGAGCTGCCCTCGGACTTCAATTTGAGTGGAGCGCCCCCGTCGCTTTTATCACTACCTTCGTAACATTGTTTGCTCTGGTGATTGCCATAACGAAAGATCTTCCAGATGTAGAGGGGGACCGCAAGTTTCAGATATCAACCTTTGCAACAAAACTTGGAGTTAGAAAAATTGCCTTCCTTGGTTCTGGGCTACTGCTGGTAAATTATGTCGGTTCTATATTGGCAGCAAGTTTCATGCCAGAGGCATTCAGGCGCAGCTTAATGATACCTACCCATACAATATTGGCATTGGGTTTGATTTTTCAGACCTGGGTGCTCGAGCAAGCAAGTTACACTAAGGAAGCCATTGCCAACTACTATAGGTTCATATGGAATCTCTTTTATGCAGAGTATATCATTTTTCCTTTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
UbiA

Protein Analysis

392

Amino Acids

43.48

Weight (kDa)

9.69

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 117 - 381 2e-36 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 653
AciI CCGC 3 cut(s) 38, 701, 886
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 726
AgsI TTSAA 3 cut(s) 96, 604, 785
AjnI CCWGG 1 cut(s) 1073
AluBI AGCT 7 cut(s) 7, 156, 242, 248, 338, 770, 1023
AluI AGCT 7 cut(s) 7, 156, 242, 248, 338, 770, 1023
Alw21I GWGCWC 2 cut(s) 9, 1083
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 1 cut(s) 581
Ama87I CYCGRG 1 cut(s) 1082
AoxI GGCC 6 cut(s) 212, 228, 270, 314, 583, 611
ApeKI GCWGC 5 cut(s) 248, 524, 770, 989, 1020
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 2 cut(s) 800, 1020
AspS9I GGNCC 5 cut(s) 228, 254, 315, 611, 883
AsuHPI GGTGA 2 cut(s) 370, 856
AvaI CYCGRG 1 cut(s) 1082
AvaII GGWCC 2 cut(s) 254, 883
AxyI CCTNAGG 1 cut(s) 311
BalI TGGCCA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 653
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 9, 1083
BbvI GCAGC 5 cut(s) 235, 536, 757, 1001, 1032
BccI CCATC 2 cut(s) 230, 665
BciT130I CCWGG 1 cut(s) 1075
BfaI CTAG 2 cut(s) 765, 1177
BfmI CTRYAG 2 cut(s) 232, 1123
BfoI RGCGCY 1 cut(s) 801
BglII AGATCT 2 cut(s) 532, 862
BisI GCNGC 6 cut(s) 249, 525, 702, 771, 990, 1021
BlsI GCNGC 6 cut(s) 250, 526, 703, 772, 991, 1022
Bme1390I CCNGG 1 cut(s) 1075
Bme18I GGWCC 2 cut(s) 254, 883
BmeT110I CYCGRG 1 cut(s) 1082
BmgT120I GGNCC 5 cut(s) 228, 254, 315, 611, 883
BmiI GGNNCC 3 cut(s) 317, 655, 884
BmrFI CCNGG 1 cut(s) 1075
BmsI GCATC 2 cut(s) 283, 474
BplI GAGNNNNNCTC 2 cut(s) 759, 791
BsaJI CCNNGG 5 cut(s) 649, 720, 775, 943, 1074
BsaWI WCCGGW 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 726
Bse21I CCTNAGG 1 cut(s) 311
Bse3DI GCAATG 2 cut(s) 58, 1110
BseBI CCWGG 1 cut(s) 1075
BseDI CCNNGG 5 cut(s) 649, 720, 775, 943, 1074
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 726
BseMI GCAATG 2 cut(s) 58, 1110
BseMII CTCAG 1 cut(s) 302
BseRI GAGGAG 2 cut(s) 19, 22
BseXI GCAGC 5 cut(s) 235, 536, 757, 1001, 1032
BshFI GGCC 6 cut(s) 214, 230, 272, 316, 585, 613
BshNI GGYRCC 1 cut(s) 653
BsiHKAI GWGCWC 2 cut(s) 9, 1083
BsiHKCI CYCGRG 1 cut(s) 1082
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 896
BslI CCNNNNNNNGG 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 896
BsmI GAATGC 3 cut(s) 416, 599, 1010
BsnI GGCC 6 cut(s) 214, 230, 272, 316, 585, 613
BsoBI CYCGRG 1 cut(s) 1082
Bsp1286I GDGCHC 2 cut(s) 9, 1083
Bsp143I GATC 3 cut(s) 259, 532, 862
BspACI CCGC 3 cut(s) 38, 701, 886
BspANI GGCC 6 cut(s) 214, 230, 272, 316, 585, 613
BspCNI CTCAG 1 cut(s) 303
BspLI GGNNCC 3 cut(s) 317, 655, 884
BspMAI CTGCAG 1 cut(s) 236
BspPI GGATC 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 653
BsrDI GCAATG 2 cut(s) 58, 1110
BssECI CCNNGG 5 cut(s) 649, 720, 775, 943, 1074
BssMI GATC 3 cut(s) 259, 532, 862
BssT1I CCWWGG 2 cut(s) 649, 943
Bst2UI CCWGG 1 cut(s) 1075
Bst4CI ACNGT 3 cut(s) 441, 635, 724
Bst6I CTCTTC 2 cut(s) 85, 680
BstC8I GCNNGC 4 cut(s) 232, 270, 583, 1089
BstDEI CTNAG 2 cut(s) 311, 1101
BstDSI CCRYGG 1 cut(s) 720
BstF5I GGATG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 2 cut(s) 800, 1020
BstKTI GATC 3 cut(s) 262, 535, 865
BstMBI GATC 3 cut(s) 259, 532, 862
BstMWI GCNNNNNNNGC 3 cut(s) 153, 248, 806
BstNI CCWGG 1 cut(s) 1075
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 1073
BstSFI CTRYAG 2 cut(s) 232, 1123
BstV1I GCAGC 5 cut(s) 235, 536, 757, 1001, 1032
BstX2I RGATCY 2 cut(s) 532, 862
BstYI RGATCY 2 cut(s) 532, 862
Bsu36I CCTNAGG 1 cut(s) 311
BsuRI GGCC 6 cut(s) 214, 230, 272, 316, 585, 613
BtgI CCRYGG 1 cut(s) 720
BtsCI GGATG 1 cut(s) 191
Cac8I GCNNGC 4 cut(s) 232, 270, 583, 1089
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 2 cut(s) 800, 1020
Cfr13I GGNCC 5 cut(s) 228, 254, 315, 611, 883
CspCI CAANNNNNGTGG 2 cut(s) 773, 808
CviAII CATG 3 cut(s) 180, 552, 1000
DdeI CTNAG 2 cut(s) 311, 1101
DpnI GATC 3 cut(s) 261, 534, 864
DpnII GATC 3 cut(s) 259, 532, 862
DraI TTTAAA 1 cut(s) 289
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 85, 680
EarI CTCTTC 2 cut(s) 85, 680
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 649, 943
Eco24I GRGCYC 1 cut(s) 9
Eco32I GATATC 2 cut(s) 484, 900
Eco47I GGWCC 2 cut(s) 254, 883
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 264
Eco81I CCTNAGG 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 1082
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 1073
EcoRV GATATC 2 cut(s) 484, 900
EcoT14I CCWWGG 2 cut(s) 649, 943
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 649, 943
FaeI CATG 3 cut(s) 183, 555, 1003
FaqI GGGAC 1 cut(s) 896
FatI CATG 3 cut(s) 179, 551, 999
FauNDI CATATG 1 cut(s) 1133
Fnu4HI GCNGC 6 cut(s) 249, 525, 702, 771, 990, 1021
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 6 cut(s) 249, 525, 702, 771, 990, 1021
FspBI CTAG 2 cut(s) 765, 1177
GlaI GCGC 2 cut(s) 799, 1019
GluI GCNGC 6 cut(s) 249, 525, 702, 771, 990, 1021
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 6 cut(s) 214, 230, 272, 316, 585, 613
HapII CCGG 1 cut(s) 263
HhaI GCGC 2 cut(s) 800, 1020
Hin1II CATG 3 cut(s) 183, 555, 1003
Hin6I GCGC 2 cut(s) 798, 1018
HinP1I GCGC 2 cut(s) 798, 1018
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 4 cut(s) 46, 51, 306, 1138
HpaII CCGG 1 cut(s) 263
HphI GGTGA 2 cut(s) 370, 856
Hpy166II GTNNAC 3 cut(s) 348, 399, 502
Hpy188I TCNGA 6 cut(s) 45, 283, 474, 779, 897, 1071
Hpy188III TCNNGA 2 cut(s) 310, 869
Hpy8I GTNNAC 3 cut(s) 348, 399, 502
Hpy99I CGWCG 1 cut(s) 809
HpyAV CCTTC 5 cut(s) 30, 99, 746, 832, 949
HpyCH4III ACNGT 3 cut(s) 441, 635, 724
HpyCH4V TGCA 7 cut(s) 63, 147, 234, 575, 599, 911, 1151
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 248, 806
HpyF3I CTNAG 2 cut(s) 311, 1101
Hsp92II CATG 3 cut(s) 183, 555, 1003
HspAI GCGC 2 cut(s) 798, 1018
Kzo9I GATC 3 cut(s) 259, 532, 862
LmnI GCTCC 5 cut(s) 4, 22, 161, 188, 795
Lsp1109I GCAGC 5 cut(s) 235, 536, 757, 1001, 1032
LweI GCATC 2 cut(s) 283, 474
MaeI CTAG 2 cut(s) 765, 1177
MaeIII GTNAC 4 cut(s) 100, 358, 826, 1094
MalI GATC 3 cut(s) 261, 534, 864
MboI GATC 3 cut(s) 259, 532, 862
MboII GAAGA 5 cut(s) 72, 84, 123, 697, 857
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 2 cut(s) 532, 862
MhlI GDGCHC 2 cut(s) 9, 1083
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 8 cut(s) 96, 217, 489, 714, 742, 785, 933, 967
MluNI TGGCCA 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 183, 281
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MseI TTAA 4 cut(s) 288, 411, 741, 1025
Msp20I TGGCCA 1 cut(s) 272
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 1075
MunI CAATTG 1 cut(s) 96
Mva1269I GAATGC 3 cut(s) 416, 599, 1010
MvaI CCWGG 1 cut(s) 1075
MwoI GCNNNNNNNGC 3 cut(s) 153, 248, 806
NdeI CATATG 1 cut(s) 1133
NdeII GATC 3 cut(s) 259, 532, 862
NlaIII CATG 3 cut(s) 183, 555, 1003
NlaIV GGNNCC 3 cut(s) 317, 655, 884
NmuCI GTSAC 2 cut(s) 100, 358
NspI RCATGY 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 1082
PctI GAATGC 3 cut(s) 416, 599, 1010
PfeI GAWTC 4 cut(s) 46, 51, 306, 1138
PkrI GCNGC 6 cut(s) 250, 526, 703, 772, 991, 1022
PsiI TTATAA 1 cut(s) 713
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 1073
PspGI CCWGG 1 cut(s) 1073
PspN4I GGNNCC 3 cut(s) 317, 655, 884
PspPI GGNCC 5 cut(s) 228, 254, 315, 611, 883
PspXI VCTCGAGB 1 cut(s) 1082
PstI CTGCAG 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 2 cut(s) 532, 862
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 4 cut(s) 288, 411, 741, 1025
SatI GCNGC 6 cut(s) 249, 525, 702, 771, 990, 1021
Sau3AI GATC 3 cut(s) 259, 532, 862
Sau96I GGNCC 5 cut(s) 228, 254, 315, 611, 883
ScrFI CCNGG 1 cut(s) 1075
SduI GDGCHC 2 cut(s) 9, 1083
SfaNI GCATC 2 cut(s) 283, 474
SfcI CTRYAG 2 cut(s) 232, 1123
Sfr274I CTCGAG 1 cut(s) 1082
SinI GGWCC 2 cut(s) 254, 883
SlaI CTCGAG 1 cut(s) 1082
SmlI CTYRAG 1 cut(s) 1082
SmoI CTYRAG 1 cut(s) 1082
Sse9I AATT 8 cut(s) 96, 217, 489, 714, 742, 785, 933, 967
SsiI CCGC 3 cut(s) 38, 701, 886
SspI AATATT 1 cut(s) 1047
SspMI CTAG 2 cut(s) 765, 1177
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 1073
StyI CCWWGG 2 cut(s) 649, 943
TaaI ACNGT 3 cut(s) 441, 635, 724
TaqI TCGA 2 cut(s) 49, 1083
TasI AATT 8 cut(s) 96, 217, 489, 714, 742, 785, 933, 967
TauI GCSGC 1 cut(s) 704
TfiI GAWTC 4 cut(s) 46, 51, 306, 1138
Tru1I TTAA 4 cut(s) 288, 411, 741, 1025
Tru9I TTAA 4 cut(s) 288, 411, 741, 1025
TseFI GTSAC 2 cut(s) 100, 358
TseI GCWGC 5 cut(s) 248, 524, 770, 989, 1020
Tsp45I GTSAC 2 cut(s) 100, 358
TspDTI ATGAA 5 cut(s) 607, 698, 988, 1120, 1162
VpaK11BI GGWCC 2 cut(s) 254, 883
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XhoI CTCGAG 1 cut(s) 1082
XspI CTAG 2 cut(s) 765, 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.