Rmu_sc0022989.1_g000001

Homogentisate phytyltransferase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022989.1
OG0008712
Physical Location & Seq
Forward (+)
2944 .. 4302
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022989.1_g000001.1.cds

Sequence Viewer

Length: 684 bp
atgtgtccgggtttggaaaaagcctatccaagtttctcggcgcaaactgagtcactgtgtcgtattagcattagaatggagctctcactcgctccttccccctcctcctcctctccgcttcggattcgattctctcattgcaccaccaccaaaccctcttctttcccttcttcaattgtcactactacttccaaatcccactccctttcttctctctcacaatgcactcacagctccaactcatttcggctcaacacatgctctacatcatccctcaacttccacaggaggccaaattccatctgggcctgcagtcaagctgaagctgctggacctgatccggtgctggccaaagtttcggattttaaggatgcttgttggagattcctgaggccccataccatacgaggaacagctcttgggtcaactgctttggtgacaagggcgttgattgagaactcccatttgataaagtggactttgctgtttaaggcattctctggtctttttgctctgctgtgtgggaatggctatattgttggcatcaatcagatatatgatatcaaaattgacaaggtaaacaagccttatttacctatagcagcaggagatctctctgtaaaatcagcatggctcttgtcttggtcttttccttggcaccatctattctgttcctccatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
UbiA

Protein Analysis

227

Amino Acids

24.95

Weight (kDa)

9.45

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 657
AciI CCGC 1 cut(s) 116
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 342
AgsI TTSAA 1 cut(s) 174
AluBI AGCT 5 cut(s) 82, 234, 320, 326, 416
AluI AGCT 5 cut(s) 82, 234, 320, 326, 416
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 1 cut(s) 332
AoxI GGCC 4 cut(s) 290, 306, 348, 392
ApeKI GCWGC 2 cut(s) 326, 602
ApoI RAATTY 1 cut(s) 295
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 3 cut(s) 306, 332, 393
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 448
AvaII GGWCC 1 cut(s) 332
AxyI CCTNAGG 1 cut(s) 389
BalI TGGCCA 1 cut(s) 350
BanI GGYRCC 1 cut(s) 657
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 313, 614
BccI CCATC 2 cut(s) 308, 669
BcnI CCSGG 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 310, 597
BglII AGATCT 1 cut(s) 610
BisI GCNGC 2 cut(s) 327, 603
BlsI GCNGC 2 cut(s) 328, 604
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 3 cut(s) 306, 332, 393
BmiI GGNNCC 2 cut(s) 395, 659
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 2 cut(s) 361, 552
BpuMI CCSGG 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 653
BsaWI WCCGGW 1 cut(s) 340
Bse21I CCTNAGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 653
BseGI GGATG 2 cut(s) 269, 376
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 39, 380
BseRI GAGGAG 3 cut(s) 94, 97, 100
BseXI GCAGC 2 cut(s) 313, 614
BshFI GGCC 4 cut(s) 292, 308, 350, 394
BshNI GGYRCC 1 cut(s) 657
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 8, 341
BsmI GAATGC 1 cut(s) 494
BsnI GGCC 4 cut(s) 292, 308, 350, 394
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 337, 610
BspACI CCGC 1 cut(s) 116
BspANI GGCC 4 cut(s) 292, 308, 350, 394
BspCNI CTCAG 2 cut(s) 40, 381
BspLI GGNNCC 2 cut(s) 395, 659
BspMAI CTGCAG 1 cut(s) 314
BspPI GGATC 1 cut(s) 332
BspT107I GGYRCC 1 cut(s) 657
BsrDI GCAATG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 653
BssMI GATC 2 cut(s) 337, 610
BssT1I CCWWGG 1 cut(s) 653
Bst4CI ACNGT 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 310, 348
BstDEI CTNAG 2 cut(s) 48, 389
BstF5I GGATG 2 cut(s) 269, 376
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 340, 613
BstMBI GATC 2 cut(s) 337, 610
BstMWI GCNNNNNNNGC 2 cut(s) 231, 326
BstNSI RCATGY 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 2 cut(s) 310, 597
BstV1I GCAGC 2 cut(s) 313, 614
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
Bsu36I CCTNAGG 1 cut(s) 389
BsuRI GGCC 4 cut(s) 292, 308, 350, 394
BtsCI GGATG 2 cut(s) 269, 376
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 310, 348
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 306, 332, 393
CviAII CATG 2 cut(s) 258, 630
DdeI CTNAG 2 cut(s) 48, 389
DpnI GATC 2 cut(s) 339, 612
DpnII GATC 2 cut(s) 337, 610
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 653
Eco24I GRGCYC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 332
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 342
Eco81I CCTNAGG 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 393
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 653
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 653
FaeI CATG 2 cut(s) 261, 633
FaiI YATR 8 cut(s) 259, 399, 404, 534, 556, 558, 599, 631
FatI CATG 2 cut(s) 257, 629
Fnu4HI GCNGC 2 cut(s) 327, 603
FokI GGATG 2 cut(s) 256, 383
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 327, 603
GlaI GCGC 1 cut(s) 42
GluI GCNGC 2 cut(s) 327, 603
HaeIII GGCC 4 cut(s) 292, 308, 350, 394
HapII CCGG 2 cut(s) 8, 341
HhaI GCGC 1 cut(s) 43
Hin1II CATG 2 cut(s) 261, 633
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 4 cut(s) 50, 124, 129, 384
HpaII CCGG 2 cut(s) 8, 341
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 3 cut(s) 426, 477, 580
Hpy188I TCNGA 3 cut(s) 123, 361, 552
Hpy188III TCNNGA 1 cut(s) 388
Hpy8I GTNNAC 3 cut(s) 426, 477, 580
HpyAV CCTTC 2 cut(s) 105, 177
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 141, 225, 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 326
HpyF3I CTNAG 2 cut(s) 48, 389
Hsp92II CATG 2 cut(s) 261, 633
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 337, 610
LmnI GCTCC 3 cut(s) 79, 97, 239
Lsp1109I GCAGC 2 cut(s) 313, 614
LweI GCATC 2 cut(s) 361, 552
MaeIII GTNAC 3 cut(s) 51, 178, 436
MalI GATC 2 cut(s) 339, 612
MboI GATC 2 cut(s) 337, 610
MboII GAAGA 3 cut(s) 150, 162, 201
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 3 cut(s) 174, 295, 567
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 2 cut(s) 261, 359
MnlI CCTC 9 cut(s) 112, 115, 118, 121, 166, 282, 284, 384, 401
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
MseI TTAA 2 cut(s) 366, 489
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 350
MspI CCGG 2 cut(s) 8, 341
MspR9I CCNGG 1 cut(s) 9
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 494
MwoI GCNNNNNNNGC 2 cut(s) 231, 326
NciI CCSGG 1 cut(s) 9
NdeII GATC 2 cut(s) 337, 610
NlaIII CATG 2 cut(s) 261, 633
NlaIV GGNNCC 2 cut(s) 395, 659
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 3 cut(s) 51, 178, 436
NspI RCATGY 1 cut(s) 261
PctI GAATGC 1 cut(s) 494
PfeI GAWTC 3 cut(s) 124, 129, 384
PkrI GCNGC 2 cut(s) 328, 604
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 395, 659
PspPI GGNCC 3 cut(s) 306, 332, 393
PstI CTGCAG 1 cut(s) 314
PsuI RGATCY 1 cut(s) 610
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 366, 489
SatI GCNGC 2 cut(s) 327, 603
Sau3AI GATC 2 cut(s) 337, 610
Sau96I GGNCC 3 cut(s) 306, 332, 393
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 1 cut(s) 84
SetI ASST 8 cut(s) 84, 236, 322, 328, 337, 418, 579, 598
SfaNI GCATC 2 cut(s) 361, 552
SfcI CTRYAG 2 cut(s) 310, 597
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 3 cut(s) 174, 295, 567
SsiI CCGC 1 cut(s) 116
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 1 cut(s) 653
TaaI ACNGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 127
TasI AATT 3 cut(s) 174, 295, 567
TfiI GAWTC 3 cut(s) 124, 129, 384
Tru1I TTAA 2 cut(s) 366, 489
Tru9I TTAA 2 cut(s) 366, 489
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 3 cut(s) 51, 178, 436
TseI GCWGC 2 cut(s) 326, 602
Tsp45I GTSAC 3 cut(s) 51, 178, 436
TspRI CASTG 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 295
XceI RCATGY 1 cut(s) 261
XcmI CCANNNNNNNNNTGG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.