Rroxscaffold_6G00403590

Homogentisate phytyltransferase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008712
Physical Location & Seq
Reverse (-)
26085927 .. 26090786
4860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403590.1

Sequence Viewer

Length: 1104 bp
ATGGAGCTCTCATTCGCTCCTTCCTCCTCTTCGCTTCGGATTCGAGTCTCTCATTGCACCACCACCAAACCCTCTTCTTTCCCTTCTTCAATTGTCACTACTACTTCCAAATCCCACTCCCTTTCTTCTCTCTCACAATGCACTCACAACTCCAACTCATTTCGGCTCTACACATGCTCTACATCATCCCTCAACTTCCACAGGAGGCCAAATTCCATCTGGGCCTGCAGTCAAGCTGAAGCTGCTGGACCTGATCCGGTGCTTGCCAAAGTTTCGGATTTTAAAGATGCTTGTTGGAGATTCCTGAGGCCCCATACCATAAGAGGAACAGCTCTTGGGTCAATTGCTTTGGTGACAAGGGCGTTGATTGAGAACTCCCATTTGATAAAGTGGACTTTGCTGTTTAAGGCATTCTCTGGTCTTTTTGCTCTACTATGCGGGAATGGCTATATTGTTGGCGTCAATCAGATATATGATATCAAAATTGACAAGGTAAACAAACCTTATTTACCCATAGCAGCAGGAGATCTCTCTGTAAAATCAGCATGGCTCTTGGTTATATTCTTTGCAGTTGCTGGCCTGTTGATTGTTGGATTCAACTTTGGGCCATTCATTACTTCTCTTTACAGTCTTGGTCTTTTCCTTGGCACCATCTATTCAGTTCCTCCATTTAGAATGAAGAGATTTCCTGTTGCGGCATTTCTTATAATTGCCACGGTACGGGGTTTCCTTCTTAATTTTGGTGTATATTATGCCACTAGAGCTGCCCTCGGACTTCAATTTGAGTGGAGGTCCCCCGTCGCTTTTATCACTACCTTCGTAACATTGTTTGCTCTGGTGATTGCCATAACGAAAGATCTTCCAGATGTAGAGGGGGACCGCAAGTTTCAGATATCAACCTTCGCAACAAAACTTGGAGTTAGAAAAATTGCCTTCCTTGGTTCTGGGCTACTGCTGGTAAATTATGTCGGTTCTATATTGGCAGCAAGTTTCATGCCAGAGGCATTCAGGCGGAGCTTAATGATACCTACCCATGCAATATTGGCATTGAGTTTGATTTTTCAGACATCTTTCACGCAGCAAAATAAAGACATCTATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
UbiA

Protein Analysis

367

Amino Acids

40.38

Weight (kDa)

9.85

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 117 - 362 2.4e-35 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 707
AccB1I GGYRCC 1 cut(s) 647
AciI CCGC 4 cut(s) 438, 695, 880, 1012
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 1 cut(s) 720
AgsI TTSAA 3 cut(s) 90, 598, 779
AluBI AGCT 6 cut(s) 7, 236, 242, 332, 764, 1017
AluI AGCT 6 cut(s) 7, 236, 242, 332, 764, 1017
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 575
AoxI GGCC 5 cut(s) 206, 222, 308, 577, 605
ApeKI GCWGC 5 cut(s) 242, 518, 764, 983, 1078
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 6 cut(s) 222, 248, 309, 605, 792, 877
AsuHPI GGTGA 2 cut(s) 364, 850
AvaII GGWCC 3 cut(s) 248, 792, 877
AxyI CCTNAGG 1 cut(s) 305
BanI GGYRCC 1 cut(s) 647
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 5 cut(s) 229, 530, 751, 995, 1090
BccI CCATC 2 cut(s) 224, 659
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 1 cut(s) 226
BglII AGATCT 2 cut(s) 526, 856
BisI GCNGC 6 cut(s) 243, 519, 696, 765, 984, 1079
BlsI GCNGC 6 cut(s) 244, 520, 697, 766, 985, 1080
Bme18I GGWCC 3 cut(s) 248, 792, 877
BmgT120I GGNCC 6 cut(s) 222, 248, 309, 605, 792, 877
BmiI GGNNCC 4 cut(s) 311, 649, 794, 878
BmsI GCATC 1 cut(s) 277
BplI GAGNNNNNCTC 2 cut(s) 753, 785
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 4 cut(s) 643, 714, 769, 937
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 720
Bse21I CCTNAGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 52
BseDI CCNNGG 4 cut(s) 643, 714, 769, 937
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 720
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 5 cut(s) 229, 530, 751, 995, 1090
BshFI GGCC 5 cut(s) 208, 224, 310, 579, 607
BshNI GGYRCC 1 cut(s) 647
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 2 cut(s) 778, 890
BslI CCNNNNNNNGG 1 cut(s) 720
BsmAI GTCTC 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 778, 890
BsmI GAATGC 2 cut(s) 410, 1004
BsnI GGCC 5 cut(s) 208, 224, 310, 579, 607
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 3 cut(s) 253, 526, 856
BspACI CCGC 4 cut(s) 438, 695, 880, 1012
BspANI GGCC 5 cut(s) 208, 224, 310, 579, 607
BspCNI CTCAG 1 cut(s) 297
BspLI GGNNCC 4 cut(s) 311, 649, 794, 878
BspMAI CTGCAG 1 cut(s) 230
BspPI GGATC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 52
BssECI CCNNGG 4 cut(s) 643, 714, 769, 937
BssMI GATC 3 cut(s) 253, 526, 856
BssNI GRCGYC 1 cut(s) 459
BssT1I CCWWGG 2 cut(s) 643, 937
Bst4CI ACNGT 2 cut(s) 629, 718
Bst6I CTCTTC 3 cut(s) 34, 79, 674
BstACI GRCGYC 1 cut(s) 459
BstC8I GCNNGC 3 cut(s) 226, 264, 577
BstDEI CTNAG 1 cut(s) 305
BstDSI CCRYGG 1 cut(s) 714
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 3 cut(s) 256, 529, 859
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 3 cut(s) 253, 526, 856
BstMWI GCNNNNNNNGC 4 cut(s) 242, 444, 761, 1043
BstNSI RCATGY 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 226
BstV1I GCAGC 5 cut(s) 229, 530, 751, 995, 1090
BstX2I RGATCY 2 cut(s) 526, 856
BstYI RGATCY 2 cut(s) 526, 856
Bsu36I CCTNAGG 1 cut(s) 305
BsuRI GGCC 5 cut(s) 208, 224, 310, 579, 607
BtgI CCRYGG 1 cut(s) 714
BtsCI GGATG 1 cut(s) 185
Cac8I GCNNGC 3 cut(s) 226, 264, 577
CaiI CAGNNNCTG 1 cut(s) 575
Cfr13I GGNCC 6 cut(s) 222, 248, 309, 605, 792, 877
CseI GACGC 1 cut(s) 448
Csp6I GTAC 1 cut(s) 719
CspCI CAANNNNNGTGG 2 cut(s) 767, 802
CviAII CATG 4 cut(s) 174, 546, 994, 1034
CviQI GTAC 1 cut(s) 719
DdeI CTNAG 1 cut(s) 305
DpnI GATC 3 cut(s) 255, 528, 858
DpnII GATC 3 cut(s) 253, 526, 856
DraI TTTAAA 1 cut(s) 283
Eam1104I CTCTTC 3 cut(s) 34, 79, 674
EarI CTCTTC 3 cut(s) 34, 79, 674
EciI GGCGGA 1 cut(s) 1027
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 643, 937
Eco24I GRGCYC 1 cut(s) 9
Eco32I GATATC 2 cut(s) 478, 894
Eco47I GGWCC 3 cut(s) 248, 792, 877
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 258
Eco81I CCTNAGG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 2 cut(s) 309, 792
EcoRV GATATC 2 cut(s) 478, 894
EcoT14I CCWWGG 2 cut(s) 643, 937
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 643, 937
FaeI CATG 4 cut(s) 177, 549, 997, 1037
FaqI GGGAC 2 cut(s) 778, 890
FatI CATG 4 cut(s) 173, 545, 993, 1033
FauI CCCGC 1 cut(s) 431
Fnu4HI GCNGC 6 cut(s) 243, 519, 696, 765, 984, 1079
FokI GGATG 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 6 cut(s) 243, 519, 696, 765, 984, 1079
FspBI CTAG 1 cut(s) 759
GluI GCNGC 6 cut(s) 243, 519, 696, 765, 984, 1079
HaeIII GGCC 5 cut(s) 208, 224, 310, 579, 607
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 448
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 4 cut(s) 177, 549, 997, 1037
HinfI GANTC 4 cut(s) 40, 45, 300, 594
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 364, 850
Hpy166II GTNNAC 2 cut(s) 393, 496
Hpy188I TCNGA 6 cut(s) 39, 277, 468, 773, 891, 1065
Hpy188III TCNNGA 2 cut(s) 304, 863
Hpy8I GTNNAC 2 cut(s) 393, 496
Hpy99I CGWCG 1 cut(s) 803
HpyAV CCTTC 6 cut(s) 30, 93, 740, 826, 910, 943
HpyCH4III ACNGT 2 cut(s) 629, 718
HpyCH4V TGCA 5 cut(s) 57, 141, 228, 569, 1037
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 444, 761, 1043
HpyF3I CTNAG 1 cut(s) 305
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 4 cut(s) 177, 549, 997, 1037
Kzo9I GATC 3 cut(s) 253, 526, 856
LmnI GCTCC 3 cut(s) 4, 22, 1014
Lsp1109I GCAGC 5 cut(s) 229, 530, 751, 995, 1090
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 759
MaeIII GTNAC 3 cut(s) 94, 352, 820
MalI GATC 3 cut(s) 255, 528, 858
MboI GATC 3 cut(s) 253, 526, 856
MboII GAAGA 6 cut(s) 21, 66, 78, 117, 691, 851
MfeI CAATTG 2 cut(s) 90, 342
MflI RGATCY 2 cut(s) 526, 856
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 9 cut(s) 90, 211, 342, 483, 708, 736, 779, 927, 961
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 3 cut(s) 177, 275, 571
MseI TTAA 5 cut(s) 282, 405, 735, 1019, 1102
MspI CCGG 1 cut(s) 257
MunI CAATTG 2 cut(s) 90, 342
Mva1269I GAATGC 2 cut(s) 410, 1004
MwoI GCNNNNNNNGC 4 cut(s) 242, 444, 761, 1043
NdeII GATC 3 cut(s) 253, 526, 856
NlaIII CATG 4 cut(s) 177, 549, 997, 1037
NlaIV GGNNCC 4 cut(s) 311, 649, 794, 878
NmuCI GTSAC 2 cut(s) 94, 352
NspI RCATGY 1 cut(s) 177
PctI GAATGC 2 cut(s) 410, 1004
PfeI GAWTC 3 cut(s) 40, 300, 594
PkrI GCNGC 6 cut(s) 244, 520, 697, 766, 985, 1080
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 792
PsiI TTATAA 1 cut(s) 707
Psp124BI GAGCTC 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 792
PspN4I GGNNCC 4 cut(s) 311, 649, 794, 878
PspPI GGNCC 6 cut(s) 222, 248, 309, 605, 792, 877
PspPPI RGGWCCY 1 cut(s) 792
PstI CTGCAG 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 2 cut(s) 526, 856
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 5 cut(s) 282, 405, 735, 1019, 1102
SatI GCNGC 6 cut(s) 243, 519, 696, 765, 984, 1079
Sau3AI GATC 3 cut(s) 253, 526, 856
Sau96I GGNCC 6 cut(s) 222, 248, 309, 605, 792, 877
SchI GAGTC 1 cut(s) 54
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 3 cut(s) 248, 792, 877
Sse9I AATT 9 cut(s) 90, 211, 342, 483, 708, 736, 779, 927, 961
SsiI CCGC 4 cut(s) 438, 695, 880, 1012
SspI AATATT 1 cut(s) 1041
SspMI CTAG 1 cut(s) 759
SstI GAGCTC 1 cut(s) 9
StyI CCWWGG 2 cut(s) 643, 937
TaaI ACNGT 2 cut(s) 629, 718
TaqI TCGA 1 cut(s) 43
TasI AATT 9 cut(s) 90, 211, 342, 483, 708, 736, 779, 927, 961
TauI GCSGC 1 cut(s) 698
TfiI GAWTC 3 cut(s) 40, 300, 594
Tru1I TTAA 5 cut(s) 282, 405, 735, 1019, 1102
Tru9I TTAA 5 cut(s) 282, 405, 735, 1019, 1102
TseFI GTSAC 2 cut(s) 94, 352
TseI GCWGC 5 cut(s) 242, 518, 764, 983, 1078
Tsp45I GTSAC 2 cut(s) 94, 352
TspDTI ATGAA 3 cut(s) 601, 692, 982
VpaK11BI GGWCC 3 cut(s) 248, 792, 877
XapI RAATTY 1 cut(s) 211
XceI RCATGY 1 cut(s) 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XspI CTAG 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.