Rh3CG242300

Homogentisate phytyltransferase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0008712
Physical Location & Seq
Forward (+)
23176862 .. 23183436
6575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG242300.1

Sequence Viewer

Length: 1269 bp
ATGGAGCTCTCACTCGCTCCTTCCCCCTCCTCCTCCTCTCCGCTTCGGATTCGATTCTCTCATTGCACCACCACCAAACCCTCTTCTTTCCCTTCTTCAATTGTCACTACTACTTCCAAATCCCACTCCCTTTCTTCTCTCTCACAATGCACTCACAGCTCCAACTCATTTCGCCTCTACACATGCTCTACATCATCCCTCAACTTCCACAGGAGGCCAAATTCCATCTGGGCCTGCAGTCAAGCTGAAGCTGCTGGGCCTGATCCCGTGCTGGCCAAAGTTTCGGATTTTAAGGATGCTTGTTGGAGATTCCTGAGGCCCCATACCATACGAGGAACAGCTCTTGGGTCAACTGCTTTGGTGACAAGGGCGTTGATTGAGAACTCCCATTTGATAAAGTGGACTCTGCTGTTTAAGGCATTCTCTGGTCTTTTTGCTCTACTGTGTGGGAATGGCTATATTGTTGGCATCAATCAGATATATGATATCAAAATTGACAAGGTAAACAAGCCTTATTTACCCATAGCAGCAGGAGATCTCTCTGTAAAATCAGCATGGCTCTTGGTTATATTCTTTGCAGTTGCTGGCCTGTTGATTGTTGGATTCAATTTTGGGCCATTCATTACTTCTCTTTACAGTCTTGGTCTTTTCCTTGGCACCATCTATTCTGTTCCTCCATTTAGAATGAAGAGATTTCCTGTTGCGGCATTTCTTATAATTGCCACGGTACGGGGTTTCCTTCTTAATTTTGGTGTATATTATGCCACTAGAGCTGCCCTCGGACTTCAATTTGAGTGGAGCGCCCCCGTCGCTTTTATCACTACCTTCGTAACATTGTTTGCTCTGGTGATTGCCATAACGAAAGATCTTCCAGATGTAGAGGGGGACCGCAAGTTTCAGATATCAACCTTTGCAACAAAACTTGGAGTTAGAAAAATTGCCTTCCTTGGTTCTGGGCTACTGCTGGTAAATTATGTCGGTTCTATATTGGCAGCAAGTTTCATGCCAGAGGCATTCAGGCGCAGCTTAATGATACCTACCCATACAATATTGGCATTGGGTTTGATTTTTCAGACCTGGGTGCTCGAGCAAGCAAGTTACACTAAGGCCCTCGTCTACTATGTACAAGCAAGGTGGGAAGGGAAAATTTTAAGGGTCAGATCTGAGTCATCTGACGACCTCGGTTGTAGAGATGTGGTCAGAGCTGCAGGGCATTCAACTCCACTCATCACCCAAACATCAATACCAAGACAAACGCGTTGGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
UbiA

Protein Analysis

422

Amino Acids

46.47

Weight (kDa)

9.89

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 118 - 370 2.5e-35 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AccB1I GGYRCC 1 cut(s) 656
AccI GTMKAC 1 cut(s) 1116
AccII CGCG 1 cut(s) 1258
AciI CCGC 3 cut(s) 41, 704, 889
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 2 cut(s) 220, 1146
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 2 cut(s) 729, 1125
AfiI CCNNNNNNNGG 1 cut(s) 729
AflIII ACRYGT 1 cut(s) 1256
AgsI TTSAA 4 cut(s) 99, 607, 788, 1218
AjnI CCWGG 1 cut(s) 1076
AluBI AGCT 8 cut(s) 7, 159, 245, 251, 341, 773, 1026, 1205
AluI AGCT 8 cut(s) 7, 159, 245, 251, 341, 773, 1026, 1205
Alw21I GWGCWC 2 cut(s) 9, 1086
AlwI GGATC 1 cut(s) 257
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 1085
AoxI GGCC 8 cut(s) 215, 231, 257, 273, 317, 586, 614, 1107
ApeKI GCWGC 6 cut(s) 251, 527, 773, 992, 1023, 1205
ApoI RAATTY 2 cut(s) 220, 1146
AspLEI GCGC 2 cut(s) 803, 1023
AspS9I GGNCC 7 cut(s) 231, 257, 318, 614, 886, 1108, 1263
AsuHPI GGTGA 3 cut(s) 373, 859, 1222
AvaI CYCGRG 1 cut(s) 1085
AvaII GGWCC 2 cut(s) 886, 1263
AxyI CCTNAGG 1 cut(s) 314
BalI TGGCCA 1 cut(s) 275
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 9, 1086
BbvI GCAGC 6 cut(s) 238, 539, 760, 1004, 1035, 1192
BccI CCATC 2 cut(s) 233, 668
BciT130I CCWGG 1 cut(s) 1078
BfaI CTAG 1 cut(s) 768
BfmI CTRYAG 2 cut(s) 235, 1206
BfoI RGCGCY 1 cut(s) 804
BglII AGATCT 3 cut(s) 535, 865, 1160
BisI GCNGC 7 cut(s) 252, 528, 705, 774, 993, 1024, 1206
BlsI GCNGC 7 cut(s) 253, 529, 706, 775, 994, 1025, 1207
Bme1390I CCNGG 1 cut(s) 1078
Bme18I GGWCC 2 cut(s) 886, 1263
BmeT110I CYCGRG 1 cut(s) 1085
BmgT120I GGNCC 7 cut(s) 231, 257, 318, 614, 886, 1108, 1263
BmiI GGNNCC 3 cut(s) 320, 658, 887
BmrFI CCNGG 1 cut(s) 1078
BmsI GCATC 2 cut(s) 286, 477
BplI GAGNNNNNCTC 2 cut(s) 762, 794
BsaJI CCNNGG 6 cut(s) 652, 723, 778, 946, 1077, 1180
Bsc4I CCNNNNNNNGG 1 cut(s) 729
Bse21I CCTNAGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 1078
BseDI CCNNGG 6 cut(s) 652, 723, 778, 946, 1077, 1180
BseGI GGATG 2 cut(s) 194, 301
BseLI CCNNNNNNNGG 1 cut(s) 729
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 305, 1155
BseRI GAGGAG 3 cut(s) 19, 22, 25
BseXI GCAGC 6 cut(s) 238, 539, 760, 1004, 1035, 1192
BseYI CCCAGC 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 1258
BshFI GGCC 8 cut(s) 217, 233, 259, 275, 319, 588, 616, 1109
BshNI GGYRCC 1 cut(s) 656
BsiHKAI GWGCWC 2 cut(s) 9, 1086
BsiHKCI CYCGRG 1 cut(s) 1085
BslFI GGGAC 1 cut(s) 899
BslI CCNNNNNNNGG 1 cut(s) 729
BsmFI GGGAC 1 cut(s) 899
BsmI GAATGC 3 cut(s) 419, 1013, 1213
BsnI GGCC 8 cut(s) 217, 233, 259, 275, 319, 588, 616, 1109
BsoBI CYCGRG 1 cut(s) 1085
Bsp1286I GDGCHC 2 cut(s) 9, 1086
Bsp1407I TGTACA 1 cut(s) 1123
Bsp143I GATC 4 cut(s) 262, 535, 865, 1160
BspACI CCGC 3 cut(s) 41, 704, 889
BspANI GGCC 8 cut(s) 217, 233, 259, 275, 319, 588, 616, 1109
BspCNI CTCAG 2 cut(s) 306, 1156
BspFNI CGCG 1 cut(s) 1258
BspLI GGNNCC 3 cut(s) 320, 658, 887
BspMAI CTGCAG 2 cut(s) 239, 1210
BspPI GGATC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 656
BsrDI GCAATG 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 1123
BssECI CCNNGG 6 cut(s) 652, 723, 778, 946, 1077, 1180
BssMI GATC 4 cut(s) 262, 535, 865, 1160
BssT1I CCWWGG 2 cut(s) 652, 946
Bst2UI CCWGG 1 cut(s) 1078
Bst4CI ACNGT 3 cut(s) 444, 638, 727
Bst6I CTCTTC 2 cut(s) 88, 683
BstAUI TGTACA 1 cut(s) 1123
BstC8I GCNNGC 4 cut(s) 235, 273, 586, 1092
BstDEI CTNAG 3 cut(s) 314, 1104, 1164
BstDSI CCRYGG 1 cut(s) 723
BstF5I GGATG 2 cut(s) 194, 301
BstFNI CGCG 1 cut(s) 1258
BstH2I RGCGCY 1 cut(s) 804
BstHHI GCGC 2 cut(s) 803, 1023
BstKTI GATC 4 cut(s) 265, 538, 868, 1163
BstMBI GATC 4 cut(s) 262, 535, 865, 1160
BstMWI GCNNNNNNNGC 4 cut(s) 156, 251, 770, 809
BstNI CCWGG 1 cut(s) 1078
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 1076
BstSFI CTRYAG 2 cut(s) 235, 1206
BstUI CGCG 1 cut(s) 1258
BstV1I GCAGC 6 cut(s) 238, 539, 760, 1004, 1035, 1192
BstX2I RGATCY 3 cut(s) 535, 865, 1160
BstYI RGATCY 3 cut(s) 535, 865, 1160
Bsu36I CCTNAGG 1 cut(s) 314
BsuRI GGCC 8 cut(s) 217, 233, 259, 275, 319, 588, 616, 1109
BtgI CCRYGG 1 cut(s) 723
BtsCI GGATG 2 cut(s) 194, 301
Cac8I GCNNGC 4 cut(s) 235, 273, 586, 1092
CaiI CAGNNNCTG 1 cut(s) 584
CfoI GCGC 2 cut(s) 803, 1023
Cfr13I GGNCC 7 cut(s) 231, 257, 318, 614, 886, 1108, 1263
Csp6I GTAC 2 cut(s) 728, 1124
CspCI CAANNNNNGTGG 4 cut(s) 776, 811, 1115, 1150
CviAII CATG 3 cut(s) 183, 555, 1003
CviQI GTAC 2 cut(s) 728, 1124
DdeI CTNAG 3 cut(s) 314, 1104, 1164
DpnI GATC 4 cut(s) 264, 537, 867, 1162
DpnII GATC 4 cut(s) 262, 535, 865, 1160
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 88, 683
EarI CTCTTC 2 cut(s) 88, 683
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 652, 946
Eco24I GRGCYC 1 cut(s) 9
Eco32I GATATC 2 cut(s) 487, 903
Eco47I GGWCC 2 cut(s) 886, 1263
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 1085
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 2 cut(s) 318, 1108
EcoRII CCWGG 1 cut(s) 1076
EcoRV GATATC 2 cut(s) 487, 903
EcoT14I CCWWGG 2 cut(s) 652, 946
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 652, 946
FaeI CATG 3 cut(s) 186, 558, 1006
FaqI GGGAC 1 cut(s) 899
FatI CATG 3 cut(s) 182, 554, 1002
FblI GTMKAC 1 cut(s) 1116
Fnu4HI GCNGC 7 cut(s) 252, 528, 705, 774, 993, 1024, 1206
FokI GGATG 2 cut(s) 181, 308
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 7 cut(s) 252, 528, 705, 774, 993, 1024, 1206
FspBI CTAG 1 cut(s) 768
GlaI GCGC 2 cut(s) 802, 1022
GluI GCNGC 7 cut(s) 252, 528, 705, 774, 993, 1024, 1206
GsaI CCCAGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 804
HaeIII GGCC 8 cut(s) 217, 233, 259, 275, 319, 588, 616, 1109
HhaI GCGC 2 cut(s) 803, 1023
Hin1II CATG 3 cut(s) 186, 558, 1006
Hin6I GCGC 2 cut(s) 801, 1021
HinP1I GCGC 2 cut(s) 801, 1021
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HinfI GANTC 6 cut(s) 49, 54, 309, 403, 603, 1166
HphI GGTGA 3 cut(s) 373, 859, 1222
Hpy166II GTNNAC 4 cut(s) 351, 402, 505, 1117
Hpy188III TCNNGA 2 cut(s) 313, 872
Hpy8I GTNNAC 4 cut(s) 351, 402, 505, 1117
Hpy99I CGWCG 1 cut(s) 812
HpyAV CCTTC 6 cut(s) 30, 102, 749, 835, 952, 1133
HpyCH4III ACNGT 3 cut(s) 444, 638, 727
HpyCH4V TGCA 6 cut(s) 66, 150, 237, 578, 914, 1208
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 251, 770, 809
HpyF3I CTNAG 3 cut(s) 314, 1104, 1164
Hsp92II CATG 3 cut(s) 186, 558, 1006
HspAI GCGC 2 cut(s) 801, 1021
Kzo9I GATC 4 cut(s) 262, 535, 865, 1160
LmnI GCTCC 4 cut(s) 4, 22, 164, 798
Lsp1109I GCAGC 6 cut(s) 238, 539, 760, 1004, 1035, 1192
LweI GCATC 2 cut(s) 286, 477
MaeI CTAG 1 cut(s) 768
MaeIII GTNAC 4 cut(s) 103, 361, 829, 1097
MalI GATC 4 cut(s) 264, 537, 867, 1162
MboI GATC 4 cut(s) 262, 535, 865, 1160
MboII GAAGA 5 cut(s) 75, 87, 126, 700, 860
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 3 cut(s) 535, 865, 1160
MhlI GDGCHC 2 cut(s) 9, 1086
MlsI TGGCCA 1 cut(s) 275
MluI ACGCGT 1 cut(s) 1256
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 2 cut(s) 397, 1175
MmeI TCCRAC 4 cut(s) 186, 284, 580, 1241
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 5 cut(s) 291, 414, 744, 1028, 1151
Msp20I TGGCCA 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 1078
MunI CAATTG 1 cut(s) 99
Mva1269I GAATGC 3 cut(s) 419, 1013, 1213
MvaI CCWGG 1 cut(s) 1078
MvnI CGCG 1 cut(s) 1258
MwoI GCNNNNNNNGC 4 cut(s) 156, 251, 770, 809
NdeII GATC 4 cut(s) 262, 535, 865, 1160
NlaIII CATG 3 cut(s) 186, 558, 1006
NlaIV GGNNCC 3 cut(s) 320, 658, 887
NmuCI GTSAC 2 cut(s) 103, 361
NspI RCATGY 1 cut(s) 186
PaeR7I CTCGAG 1 cut(s) 1085
PctI GAATGC 3 cut(s) 419, 1013, 1213
PfeI GAWTC 4 cut(s) 49, 54, 309, 603
PkrI GCNGC 7 cut(s) 253, 529, 706, 775, 994, 1025, 1207
PleI GAGTC 2 cut(s) 397, 1174
PpsI GAGTC 2 cut(s) 397, 1174
PsiI TTATAA 1 cut(s) 716
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 1076
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 1076
PspN4I GGNNCC 3 cut(s) 320, 658, 887
PspPI GGNCC 7 cut(s) 231, 257, 318, 614, 886, 1108, 1263
PspXI VCTCGAGB 1 cut(s) 1085
PstI CTGCAG 2 cut(s) 239, 1210
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 3 cut(s) 535, 865, 1160
RsaI GTAC 2 cut(s) 729, 1125
RsaNI GTAC 2 cut(s) 728, 1124
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 5 cut(s) 291, 414, 744, 1028, 1151
SatI GCNGC 7 cut(s) 252, 528, 705, 774, 993, 1024, 1206
Sau3AI GATC 4 cut(s) 262, 535, 865, 1160
Sau96I GGNCC 7 cut(s) 231, 257, 318, 614, 886, 1108, 1263
SchI GAGTC 2 cut(s) 397, 1175
ScrFI CCNGG 1 cut(s) 1078
SduI GDGCHC 2 cut(s) 9, 1086
SfaNI GCATC 2 cut(s) 286, 477
SfcI CTRYAG 2 cut(s) 235, 1206
Sfr274I CTCGAG 1 cut(s) 1085
SinI GGWCC 2 cut(s) 886, 1263
SlaI CTCGAG 1 cut(s) 1085
SmlI CTYRAG 1 cut(s) 1085
SmoI CTYRAG 1 cut(s) 1085
SsiI CCGC 3 cut(s) 41, 704, 889
SspI AATATT 1 cut(s) 1050
SspMI CTAG 1 cut(s) 768
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 1076
StyI CCWWGG 2 cut(s) 652, 946
TaaI ACNGT 3 cut(s) 444, 638, 727
TaqI TCGA 2 cut(s) 52, 1086
TatI WGTACW 1 cut(s) 1123
TauI GCSGC 1 cut(s) 707
TfiI GAWTC 4 cut(s) 49, 54, 309, 603
Tru1I TTAA 5 cut(s) 291, 414, 744, 1028, 1151
Tru9I TTAA 5 cut(s) 291, 414, 744, 1028, 1151
TseFI GTSAC 2 cut(s) 103, 361
TseI GCWGC 6 cut(s) 251, 527, 773, 992, 1023, 1205
Tsp45I GTSAC 2 cut(s) 103, 361
TspDTI ATGAA 3 cut(s) 610, 701, 991
VpaK11BI GGWCC 2 cut(s) 886, 1263
XapI RAATTY 2 cut(s) 220, 1146
XceI RCATGY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XhoI CTCGAG 1 cut(s) 1085
XmiI GTMKAC 1 cut(s) 1116
XspI CTAG 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.