FvH4_6g21320

Homogentisate phytyltransferase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008712
Physical Location & Seq
Forward (+)
14862430 .. 14867653
5224 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21320.t1

Sequence Viewer

Length: 1329 bp
ATGTGTGGGAGAGGTAAGGGGTTCGATCCCCCGCATCTCCAATCTTCTATCTTCTTTTTTGTTTCGTCCAAACGACACCGTCTGTATGGTGTTTACTGTTTAGCTCGATGTTTAAAGCCTATCCAAGTTTCTCGGCGCAAACCCAGTGTGTGTCGTGGTCCTATTAACATGGAGCTCTCCTTTTCTCCTTCCTCCCCTTCTCTTCGGATTCGAGGCACCACCAAACCCTCTTGTTTCCCTTCTTCTTCTTCTATTCGAACTACCAAATCTCAATCCCTCTCTTCTCTCTCACAATGCACTACCAACCTCCACTCTTTTGGGCTATACACTTGCTCTAGAACCTTCCTCAACTTCCAGCAGAGGCGAAATTCCATCTGGGCCTGCAGTCAAGCTGAAGCTGCTGGATCTGATCCGGTACTTACCAAAGTTTCAGATTTTAAAGATGCTTGTTGGAGATTCCTGAGGCCACATACTATACGTGGAACTGCTCTTGGGTCAATTGCTTTGGTGACAAAGGCGTTGATTGAGAACTCCCATTTGATAAAGTGGACTTTGCTGTGTAAGGCATTCTCTGGTCTTTTCGCTCTGCTATGTGGAAATGGCTATATTGTTGGCATCAATCAGATATACGATATCAAAATTGACAAGGTGAACAAACCTTATCTACCCATAGCTGCAGGAGATCTCTCCGTCAAATCAGCATGGGTTTTGGTTATATTTTTCGCAATCGCTGGCCTCTTGATTGTCGGATTCAATTTCGGGCCATTCATTACTTCTCTTTACAGTCTTGGTCTTTTCCTTGGCACCATCTATTCTGTTCCTCCATTTAGAATGAAGAGATTTCCTGTTGCGGCATTTCTCATAATTGCCACGGTACGGGGTTTCCTTCTTAATTTTGGTGTATATTATGCCACTAGAGCTGCCCTTGGACTTCAATTTGAGTGGAGCTCCCCCGTTGCTTTTATCACTACCTTTGTAACATTGTTTGCTCTGGTGATTGCCATTACAAAAGATCTTCCAGACGTAGAGGGGGACCGCAAGTTTCAGATATCAACCTTTGCAACAAAACTTGGAGTTAGAAAAATTGCCTTCCTTGGTTCTGGGCTATTGCTGGTAAATTATGTTGGTTCTATATTGGCAGCAAGTTTCATGCCAGAGGCATTCAGGCGTAGCTTAATGATACCTACCCATACAATCTTGGCCTTGAGTTTGATTTTTCAGACCTGGGTGCTCGAGAAAGCAAGTTACACTAAGGAAGCCATTGCCAACTACTATAGGTTCATATGGAATCTCTTTTATGCAGAGTATATCATTTTTCCTTTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
UbiA

Protein Analysis

443

Amino Acids

49.29

Weight (kDa)

9.91

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 170 - 431 1.6e-36 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 215, 803
AciI CCGC 3 cut(s) 32, 851, 1036
AclWI GGATC 3 cut(s) 20, 404, 412
AcsI RAATTY 1 cut(s) 367
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 2 cut(s) 417, 876
AfiI CCNNNNNNNGG 1 cut(s) 876
AgsI TTSAA 2 cut(s) 754, 935
AjnI CCWGG 1 cut(s) 1223
AluBI AGCT 8 cut(s) 104, 175, 392, 398, 674, 920, 948, 1173
AluI AGCT 8 cut(s) 104, 175, 392, 398, 674, 920, 948, 1173
Alw21I GWGCWC 3 cut(s) 177, 950, 1233
AlwI GGATC 3 cut(s) 20, 404, 412
Ama87I CYCGRG 1 cut(s) 1232
AoxI GGCC 5 cut(s) 378, 464, 733, 761, 1200
ApeKI GCWGC 4 cut(s) 398, 674, 920, 1139
ApoI RAATTY 1 cut(s) 367
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 4 cut(s) 158, 378, 761, 1033
AsuHPI GGTGA 3 cut(s) 520, 661, 1006
AsuII TTCGAA 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 1232
AvaII GGWCC 2 cut(s) 158, 1033
AxyI CCTNAGG 1 cut(s) 461
BanI GGYRCC 2 cut(s) 215, 803
BanII GRGCYC 2 cut(s) 177, 950
Bbv12I GWGCWC 3 cut(s) 177, 950, 1233
BbvI GCAGC 4 cut(s) 385, 661, 907, 1151
BccI CCATC 2 cut(s) 380, 815
BciT130I CCWGG 1 cut(s) 1225
BfaI CTAG 3 cut(s) 336, 915, 1327
BfmI CTRYAG 3 cut(s) 382, 675, 1273
BglII AGATCT 2 cut(s) 682, 1012
BisI GCNGC 5 cut(s) 399, 675, 852, 921, 1140
BlsI GCNGC 5 cut(s) 400, 676, 853, 922, 1141
Bme1390I CCNGG 1 cut(s) 1225
Bme18I GGWCC 2 cut(s) 158, 1033
BmeT110I CYCGRG 1 cut(s) 1232
BmgT120I GGNCC 4 cut(s) 158, 378, 761, 1033
BmiI GGNNCC 3 cut(s) 217, 805, 1034
BmrFI CCNGG 1 cut(s) 1225
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 3 cut(s) 43, 433, 624
BmuI ACTGGG 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 932, 964
Bpu14I TTCGAA 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 1225
BsaAI YACGTR 1 cut(s) 479
BsaJI CCNNGG 5 cut(s) 799, 870, 925, 1093, 1224
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 1 cut(s) 876
Bse1I ACTGG 1 cut(s) 144
Bse21I CCTNAGG 1 cut(s) 461
Bse3DI GCAATG 1 cut(s) 1260
BseBI CCWGG 1 cut(s) 1225
BseDI CCNNGG 5 cut(s) 799, 870, 925, 1093, 1224
BseLI CCNNNNNNNGG 1 cut(s) 876
BseMI GCAATG 1 cut(s) 1260
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 4 cut(s) 385, 661, 907, 1151
BshFI GGCC 5 cut(s) 380, 466, 735, 763, 1202
BshNI GGYRCC 2 cut(s) 215, 803
BsiHKAI GWGCWC 3 cut(s) 177, 950, 1233
BsiHKCI CYCGRG 1 cut(s) 1232
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 1 cut(s) 1046
BslI CCNNNNNNNGG 1 cut(s) 876
BsmFI GGGAC 1 cut(s) 1046
BsmI GAATGC 2 cut(s) 566, 1160
BsnI GGCC 5 cut(s) 380, 466, 735, 763, 1202
BsoBI CYCGRG 1 cut(s) 1232
Bsp119I TTCGAA 1 cut(s) 256
Bsp1286I GDGCHC 3 cut(s) 177, 950, 1233
Bsp143I GATC 5 cut(s) 25, 404, 409, 682, 1012
BspACI CCGC 3 cut(s) 32, 851, 1036
BspANI GGCC 5 cut(s) 380, 466, 735, 763, 1202
BspCNI CTCAG 1 cut(s) 453
BspLI GGNNCC 3 cut(s) 217, 805, 1034
BspMAI CTGCAG 2 cut(s) 386, 679
BspPI GGATC 3 cut(s) 20, 404, 412
BspT104I TTCGAA 1 cut(s) 256
BspT107I GGYRCC 2 cut(s) 215, 803
BsrDI GCAATG 1 cut(s) 1260
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 5 cut(s) 799, 870, 925, 1093, 1224
BssMI GATC 5 cut(s) 25, 404, 409, 682, 1012
BssT1I CCWWGG 3 cut(s) 799, 925, 1093
Bst2UI CCWGG 1 cut(s) 1225
Bst4CI ACNGT 4 cut(s) 80, 98, 785, 874
Bst6I CTCTTC 3 cut(s) 207, 286, 830
BstBAI YACGTR 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 382, 733
BstDEI CTNAG 2 cut(s) 461, 1251
BstDSI CCRYGG 1 cut(s) 870
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 5 cut(s) 28, 407, 412, 685, 1015
BstMBI GATC 5 cut(s) 25, 404, 409, 682, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 398, 917
BstNI CCWGG 1 cut(s) 1225
BstSCI CCNGG 1 cut(s) 1223
BstSFI CTRYAG 3 cut(s) 382, 675, 1273
BstV1I GCAGC 4 cut(s) 385, 661, 907, 1151
BstX2I RGATCY 3 cut(s) 404, 682, 1012
BstXI CCANNNNNNTGG 1 cut(s) 317
BstYI RGATCY 3 cut(s) 404, 682, 1012
Bsu36I CCTNAGG 1 cut(s) 461
BsuRI GGCC 5 cut(s) 380, 466, 735, 763, 1202
BtgI CCRYGG 1 cut(s) 870
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 2 cut(s) 382, 733
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 4 cut(s) 158, 378, 761, 1033
Csp6I GTAC 2 cut(s) 416, 875
CspCI CAANNNNNGTGG 2 cut(s) 923, 958
CviAII CATG 3 cut(s) 169, 702, 1150
CviQI GTAC 2 cut(s) 416, 875
DdeI CTNAG 2 cut(s) 461, 1251
DpnI GATC 5 cut(s) 27, 406, 411, 684, 1014
DpnII GATC 5 cut(s) 25, 404, 409, 682, 1012
DraI TTTAAA 2 cut(s) 114, 439
Eam1104I CTCTTC 3 cut(s) 207, 286, 830
EarI CTCTTC 3 cut(s) 207, 286, 830
Ecl136II GAGCTC 2 cut(s) 175, 948
Eco130I CCWWGG 3 cut(s) 799, 925, 1093
Eco24I GRGCYC 2 cut(s) 177, 950
Eco32I GATATC 2 cut(s) 634, 1050
Eco47I GGWCC 2 cut(s) 158, 1033
Eco53kI GAGCTC 2 cut(s) 175, 948
Eco57I CTGAAG 1 cut(s) 414
Eco81I CCTNAGG 1 cut(s) 461
Eco88I CYCGRG 1 cut(s) 1232
EcoICRI GAGCTC 2 cut(s) 175, 948
EcoRII CCWGG 1 cut(s) 1223
EcoRV GATATC 2 cut(s) 634, 1050
EcoT14I CCWWGG 3 cut(s) 799, 925, 1093
EcoT38I GRGCYC 2 cut(s) 177, 950
ErhI CCWWGG 3 cut(s) 799, 925, 1093
FaeI CATG 3 cut(s) 172, 705, 1153
FaqI GGGAC 1 cut(s) 1046
FatI CATG 3 cut(s) 168, 701, 1149
FauI CCCGC 1 cut(s) 39
FauNDI CATATG 1 cut(s) 1283
Fnu4HI GCNGC 5 cut(s) 399, 675, 852, 921, 1140
FriOI GRGCYC 2 cut(s) 177, 950
Fsp4HI GCNGC 5 cut(s) 399, 675, 852, 921, 1140
FspBI CTAG 3 cut(s) 336, 915, 1327
GlaI GCGC 1 cut(s) 137
GluI GCNGC 5 cut(s) 399, 675, 852, 921, 1140
HaeIII GGCC 5 cut(s) 380, 466, 735, 763, 1202
HapII CCGG 1 cut(s) 413
HhaI GCGC 1 cut(s) 138
Hin1II CATG 3 cut(s) 172, 705, 1153
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HinfI GANTC 4 cut(s) 208, 456, 750, 1288
HpaII CCGG 1 cut(s) 413
HphI GGTGA 3 cut(s) 520, 661, 1006
Hpy166II GTNNAC 3 cut(s) 94, 549, 652
Hpy188I TCNGA 7 cut(s) 207, 409, 433, 624, 749, 1047, 1221
Hpy188III TCNNGA 5 cut(s) 336, 460, 739, 1019, 1234
Hpy8I GTNNAC 3 cut(s) 94, 549, 652
HpyAV CCTTC 6 cut(s) 198, 207, 249, 352, 896, 1099
HpyCH4III ACNGT 4 cut(s) 80, 98, 785, 874
HpyCH4IV ACGT 2 cut(s) 478, 1023
HpyCH4V TGCA 5 cut(s) 297, 384, 677, 1061, 1301
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 917
HpyF3I CTNAG 2 cut(s) 461, 1251
HpySE526I ACGT 2 cut(s) 478, 1023
Hsp92II CATG 3 cut(s) 172, 705, 1153
HspAI GCGC 1 cut(s) 136
Kzo9I GATC 5 cut(s) 25, 404, 409, 682, 1012
LmnI GCTCC 3 cut(s) 172, 945, 953
Lsp1109I GCAGC 4 cut(s) 385, 661, 907, 1151
LweI GCATC 3 cut(s) 43, 433, 624
MaeI CTAG 3 cut(s) 336, 915, 1327
MaeII ACGT 2 cut(s) 478, 1023
MaeIII GTNAC 3 cut(s) 508, 976, 1244
MalI GATC 5 cut(s) 27, 406, 411, 684, 1014
MboI GATC 5 cut(s) 25, 404, 409, 682, 1012
MboII GAAGA 9 cut(s) 36, 43, 194, 234, 237, 240, 273, 847, 1007
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 3 cut(s) 404, 682, 1012
MhlI GDGCHC 3 cut(s) 177, 950, 1233
MluCI AATT 9 cut(s) 367, 498, 639, 754, 864, 892, 935, 1083, 1117
MmeI TCCRAC 2 cut(s) 431, 727
MseI TTAA 5 cut(s) 113, 165, 438, 891, 1175
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 1 cut(s) 1225
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 2 cut(s) 566, 1160
MvaI CCWGG 1 cut(s) 1225
MwoI GCNNNNNNNGC 2 cut(s) 398, 917
NdeI CATATG 1 cut(s) 1283
NdeII GATC 5 cut(s) 25, 404, 409, 682, 1012
NlaIII CATG 3 cut(s) 172, 705, 1153
NlaIV GGNNCC 3 cut(s) 217, 805, 1034
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 508
NspV TTCGAA 1 cut(s) 256
PaeR7I CTCGAG 1 cut(s) 1232
PctI GAATGC 2 cut(s) 566, 1160
PfeI GAWTC 4 cut(s) 208, 456, 750, 1288
PflFI GACNNNGTC 1 cut(s) 78
PkrI GCNGC 5 cut(s) 400, 676, 853, 922, 1141
Ppu21I YACGTR 1 cut(s) 479
Psp124BI GAGCTC 2 cut(s) 177, 950
Psp6I CCWGG 1 cut(s) 1223
PspGI CCWGG 1 cut(s) 1223
PspN4I GGNNCC 3 cut(s) 217, 805, 1034
PspPI GGNCC 4 cut(s) 158, 378, 761, 1033
PstI CTGCAG 2 cut(s) 386, 679
PsuI RGATCY 3 cut(s) 404, 682, 1012
PsyI GACNNNGTC 1 cut(s) 78
RsaI GTAC 2 cut(s) 417, 876
RsaNI GTAC 2 cut(s) 416, 875
SacI GAGCTC 2 cut(s) 177, 950
SaqAI TTAA 5 cut(s) 113, 165, 438, 891, 1175
SatI GCNGC 5 cut(s) 399, 675, 852, 921, 1140
Sau3AI GATC 5 cut(s) 25, 404, 409, 682, 1012
Sau96I GGNCC 4 cut(s) 158, 378, 761, 1033
ScrFI CCNGG 1 cut(s) 1225
SduI GDGCHC 3 cut(s) 177, 950, 1233
SfaNI GCATC 3 cut(s) 43, 433, 624
SfcI CTRYAG 3 cut(s) 382, 675, 1273
Sfr274I CTCGAG 1 cut(s) 1232
SfuI TTCGAA 1 cut(s) 256
SinI GGWCC 2 cut(s) 158, 1033
SlaI CTCGAG 1 cut(s) 1232
SmlI CTYRAG 2 cut(s) 1204, 1232
SmoI CTYRAG 2 cut(s) 1204, 1232
Sse9I AATT 9 cut(s) 367, 498, 639, 754, 864, 892, 935, 1083, 1117
SsiI CCGC 3 cut(s) 32, 851, 1036
SspMI CTAG 3 cut(s) 336, 915, 1327
SstI GAGCTC 2 cut(s) 177, 950
StyD4I CCNGG 1 cut(s) 1223
StyI CCWWGG 3 cut(s) 799, 925, 1093
TaaI ACNGT 4 cut(s) 80, 98, 785, 874
TaiI ACGT 2 cut(s) 481, 1026
TaqI TCGA 5 cut(s) 24, 106, 211, 256, 1233
TasI AATT 9 cut(s) 367, 498, 639, 754, 864, 892, 935, 1083, 1117
TauI GCSGC 1 cut(s) 854
TfiI GAWTC 4 cut(s) 208, 456, 750, 1288
Tru1I TTAA 5 cut(s) 113, 165, 438, 891, 1175
Tru9I TTAA 5 cut(s) 113, 165, 438, 891, 1175
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 4 cut(s) 398, 674, 920, 1139
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 5 cut(s) 757, 848, 1138, 1270, 1312
TspGWI ACGGA 1 cut(s) 679
TspRI CASTG 1 cut(s) 151
Tth111I GACNNNGTC 1 cut(s) 78
VpaK11BI GGWCC 2 cut(s) 158, 1033
XapI RAATTY 1 cut(s) 367
XbaI TCTAGA 1 cut(s) 335
XhoI CTCGAG 1 cut(s) 1232
XspI CTAG 3 cut(s) 336, 915, 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.