Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008712

Physical Location & Seq

Genomic Coordinates Forward (+)

3460198 .. 3464584

Gene Structure 4387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03990.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGATCTCTCATTCGCTCCCTCCTCTTCTCTGCGGTTCCCAGCTATAAGCCCTCACTGCAGCACCTCCTCCTATATTCCTCCAATTTCTGCTAATCCCACCACTGCAAAACCAGCTGCTTTTCTCTCAAGTTGCAGGACAAACTTGTACTCAATTGGGCTGTCCAGAAGCTGCTCCAAATCTTTGCTCAGCTACCGGAAGAAGCGAAATTCCATCTGGGCCTGCAGTCAAGTTGGAGCTGCTGAATCTGATCCAGTATTGACCACAGTCTCAGATTTTAAAGATGCTTGTTGGCGATTCCTCAGGCCCCATACCATACGTGGGACAGTTCTCGGGTCTACTGCTTTGGTGACAAGAGCTTTGATTGAGAACTCCAATTTGATAAAGTGGTCTCTGCTGTTTAAGGCATTCTCTGGTCTTTTTGCGCTACTATGTGGGAATGGTTATATAGTTGGCATCAATCAGATTTACGATATCAAAATTGATAAGGTAAACAAACCTTATTTACCTATCGCTGCAGGGGATCTTTCAGTTAAATCAGCATGGCTCTTGGTGGTATTTTTTGCGGTCACTGGCTTGTTGATTGTTGGACTGAACTTCGGGCCATTCATTACTTCTCTCTACTGTCTTGGTCTTTTCCTTGGCACCATATATTCTGTTCCTCCGCTTAGAATGAAGAGATTTCCTGTTGCAGCTTTTCTTATAATTGCCACGGTAAGGGGCTTCCTTCTCAATTTTGGTGTATATTATGCCACTAGAGCTGCCCTTGGGCTTCAATTTGAGTGGAGCTCGGCCGTTGCTTTTATCACCACCTTTGTAACATTGTTTGCTTTGGTTATTGCGATAACAAAAGACCTTCCGGATGTAGAGGGGGACCGCAAGTTTGAAATATCAACATTTGCAACAAAACTCGGAGTTAGAAACATTGCGTTTCTTGGTTCTGGGCTTCTGCTACTAAATTATGTTGGTTCCATATTCGCAGCAAGTTTAATGCCGGAGGCATTCAGACGTAGCTTAATGATACCCATGCATGCAATCTTGGCACTGAGTTTAGTTTTCCAGACTTGGGTGCTCGAGCAAGCAAATTACACCAAGGAAGCAATTGCCGGCTACTACAGATTTATATGGAATCTCTTCTATGCCGAGTATCTTCTTTTCCCTTTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 map00130

Pfam Domains

Protein Families

UbiA

Protein Analysis

390

Amino Acids

42.95

Weight (kDa)

9.56

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11945 AT3G11945
fragaria_vesca	FvH4_6g21320 FvH4_6g21320 FvH4_6g21320 FvH4_6g21320
malus_domestica	MD12G1050300.v1.1 MD14G1048800.v1.1
prunus_persica	Prupe.7G086500_v2.0.a1 Prupe.7G086500_v2.0.a1
pyrus_communis	pycom12g04460 pycom14g03990
rosa_chinensis	RchiOBHm_Chr3g0477931
rosa_laevigata	RLG00000023679
rosa_multiflora	Rmu_sc0005991.1_g000013 Rmu_sc0022989.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403590
rosa_rugosa	Rorug03G0163900
rosa_samantha	Rh3AG214700 Rh3BG248300 Rh3CG242300 Rh3DG241700
rosa_wichuraiana	Rw3G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	704
AccB1I	GGYRCC	1 cut(s)	644
AccI	GTMKAC	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	859
AciI	CCGC	4 cut(s)	34, 566, 665, 877
AclWI	GGATC	3 cut(s)	12, 245, 531
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	3 cut(s)	321, 717, 1066
AgsI	TTSAA	2 cut(s)	776, 887
Alw21I	GWGCWC	2 cut(s)	791, 1074
Alw26I	GTCTC	2 cut(s)	274, 396
AlwI	GGATC	3 cut(s)	12, 245, 531
AlwNI	CAGNNNCTG	1 cut(s)	171
Ama87I	CYCGRG	2 cut(s)	332, 1073
Aor13HI	TCCGGA	1 cut(s)	859
AoxI	GGCC	4 cut(s)	219, 305, 602, 792
ApeKI	GCWGC	8 cut(s)	60, 116, 171, 239, 515, 692, 761, 980
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	4 cut(s)	343, 375, 866, 898
Asp700I	GAANNNNTTC	1 cut(s)	1133
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	4 cut(s)	219, 306, 602, 874
AsuHPI	GGTGA	2 cut(s)	361, 799
AvaI	CYCGRG	2 cut(s)	332, 1073
AvaII	GGWCC	1 cut(s)	874
AxyI	CCTNAGG	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	791
Bbv12I	GWGCWC	2 cut(s)	791, 1074
BbvI	GCAGC	8 cut(s)	72, 103, 158, 226, 502, 704, 748, 992
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	779
BcoDI	GTCTC	2 cut(s)	274, 396
BfaI	CTAG	2 cut(s)	756, 1168
BfmI	CTRYAG	4 cut(s)	58, 223, 516, 1114
BisI	GCNGC	8 cut(s)	61, 117, 172, 240, 516, 693, 762, 981
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	8 cut(s)	62, 118, 173, 241, 517, 694, 763, 982
Bme18I	GGWCC	1 cut(s)	874
BmeT110I	CYCGRG	2 cut(s)	332, 1073
BmgT120I	GGNCC	4 cut(s)	219, 306, 602, 874
BmiI	GGNNCC	5 cut(s)	38, 308, 646, 875, 970
BmsI	GCATC	2 cut(s)	274, 465
BoxI	GACNNNNGTC	1 cut(s)	266
BplI	GAGNNNNNCTC	2 cut(s)	773, 805
Bpu1102I	GCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	112
BsaAI	YACGTR	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	640, 711, 766, 1092
BsaWI	WCCGGW	2 cut(s)	195, 859
Bsc4I	CCNNNNNNNGG	3 cut(s)	321, 717, 1066
Bse118I	RCCGGY	1 cut(s)	1106
Bse1I	ACTGG	2 cut(s)	254, 577
Bse21I	CCTNAGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	924
BseAI	TCCGGA	1 cut(s)	859
BseDI	CCNNGG	4 cut(s)	640, 711, 766, 1092
BseGI	GGATG	1 cut(s)	868
BseLI	CCNNNNNNNGG	3 cut(s)	321, 717, 1066
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	4 cut(s)	202, 285, 316, 1037
BseNI	ACTGG	2 cut(s)	254, 577
BseRI	GAGGAG	2 cut(s)	13, 58
BseX3I	CGGCCG	1 cut(s)	792
BseXI	GCAGC	8 cut(s)	72, 103, 158, 226, 502, 704, 748, 992
BseYI	CCCAGC	1 cut(s)	40
Bsh1285I	CGRYCG	1 cut(s)	795
BshFI	GGCC	4 cut(s)	221, 307, 604, 794
BshNI	GGYRCC	1 cut(s)	644
BsiEI	CGRYCG	1 cut(s)	795
BsiHKAI	GWGCWC	2 cut(s)	791, 1074
BsiHKCI	CYCGRG	2 cut(s)	332, 1073
BsiSI	CCGG	4 cut(s)	196, 860, 995, 1107
BslFI	GGGAC	2 cut(s)	337, 887
BslI	CCNNNNNNNGG	3 cut(s)	321, 717, 1066
BsmAI	GTCTC	2 cut(s)	274, 396
BsmFI	GGGAC	2 cut(s)	337, 887
BsmI	GAATGC	2 cut(s)	407, 1001
BsnI	GGCC	4 cut(s)	221, 307, 604, 794
Bso31I	GGTCTC	1 cut(s)	396
BsoBI	CYCGRG	2 cut(s)	332, 1073
Bsp1286I	GDGCHC	2 cut(s)	791, 1074
Bsp13I	TCCGGA	1 cut(s)	859
Bsp143I	GATC	3 cut(s)	4, 250, 523
Bsp1720I	GCTNAGC	1 cut(s)	188
BspACI	CCGC	4 cut(s)	34, 566, 665, 877
BspANI	GGCC	4 cut(s)	221, 307, 604, 794
BspCNI	CTCAG	4 cut(s)	201, 284, 315, 1038
BspEI	TCCGGA	1 cut(s)	859
BspLI	GGNNCC	5 cut(s)	38, 308, 646, 875, 970
BspMAI	CTGCAG	3 cut(s)	62, 227, 520
BspPI	GGATC	3 cut(s)	12, 245, 531
BspT107I	GGYRCC	1 cut(s)	644
BspTNI	GGTCTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	924
BsrFI	RCCGGY	1 cut(s)	1106
BsrI	ACTGG	2 cut(s)	254, 577
BssAI	RCCGGY	1 cut(s)	1106
BssECI	CCNNGG	4 cut(s)	640, 711, 766, 1092
BssMI	GATC	3 cut(s)	4, 250, 523
BssT1I	CCWWGG	3 cut(s)	640, 766, 1092
Bst4CI	ACNGT	4 cut(s)	268, 328, 626, 715
Bst6I	CTCTTC	3 cut(s)	31, 671, 1139
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	4 cut(s)	223, 1032, 1080, 1108
BstDEI	CTNAG	5 cut(s)	188, 271, 302, 668, 1046
BstDSI	CCRYGG	1 cut(s)	711
BstF5I	GGATG	1 cut(s)	868
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	3 cut(s)	7, 253, 526
BstMAI	GTCTC	2 cut(s)	274, 396
BstMBI	GATC	3 cut(s)	4, 250, 523
BstMCI	CGRYCG	1 cut(s)	795
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 113, 758, 1040
BstNSI	RCATGY	1 cut(s)	1034
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSFI	CTRYAG	4 cut(s)	58, 223, 516, 1114
BstV1I	GCAGC	8 cut(s)	72, 103, 158, 226, 502, 704, 748, 992
BstX2I	RGATCY	2 cut(s)	4, 523
BstYI	RGATCY	2 cut(s)	4, 523
BstZI	CGGCCG	1 cut(s)	792
Bsu36I	CCTNAGG	1 cut(s)	302
BsuRI	GGCC	4 cut(s)	221, 307, 604, 794
BtgI	CCRYGG	1 cut(s)	711
BtsCI	GGATG	1 cut(s)	868
BtsI	GCAGTG	2 cut(s)	55, 102
BtsIMutI	CAGTG	4 cut(s)	55, 102, 570, 1043
Cac8I	GCNNGC	4 cut(s)	223, 1032, 1080, 1108
CaiI	CAGNNNCTG	1 cut(s)	171
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	1106
Cfr13I	GGNCC	4 cut(s)	219, 306, 602, 874
Csp6I	GTAC	1 cut(s)	148
CspCI	CAANNNNNGTGG	2 cut(s)	764, 799
CviAII	CATG	3 cut(s)	543, 1027, 1031
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	5 cut(s)	188, 271, 302, 668, 1046
DpnI	GATC	3 cut(s)	6, 252, 525
DpnII	GATC	3 cut(s)	4, 250, 523
DraI	TTTAAA	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	792
EagI	CGGCCG	1 cut(s)	792
Eam1104I	CTCTTC	3 cut(s)	31, 671, 1139
EarI	CTCTTC	3 cut(s)	31, 671, 1139
Ecl136II	GAGCTC	1 cut(s)	789
EclXI	CGGCCG	1 cut(s)	792
Eco130I	CCWWGG	3 cut(s)	640, 766, 1092
Eco24I	GRGCYC	1 cut(s)	791
Eco31I	GGTCTC	1 cut(s)	396
Eco32I	GATATC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	874
Eco52I	CGGCCG	1 cut(s)	792
Eco53kI	GAGCTC	1 cut(s)	789
Eco81I	CCTNAGG	1 cut(s)	302
Eco88I	CYCGRG	2 cut(s)	332, 1073
EcoICRI	GAGCTC	1 cut(s)	789
EcoO109I	RGGNCCY	1 cut(s)	306
EcoRV	GATATC	1 cut(s)	475
EcoT14I	CCWWGG	3 cut(s)	640, 766, 1092
EcoT22I	ATGCAT	1 cut(s)	1032
EcoT38I	GRGCYC	1 cut(s)	791
ErhI	CCWWGG	3 cut(s)	640, 766, 1092
FaeI	CATG	3 cut(s)	546, 1030, 1034
FaqI	GGGAC	2 cut(s)	337, 887
FatI	CATG	3 cut(s)	542, 1026, 1030
FblI	GTMKAC	1 cut(s)	338
Fnu4HI	GCNGC	8 cut(s)	61, 117, 172, 240, 516, 693, 762, 981
FokI	GGATG	1 cut(s)	875
FriOI	GRGCYC	1 cut(s)	791
Fsp4HI	GCNGC	8 cut(s)	61, 117, 172, 240, 516, 693, 762, 981
FspBI	CTAG	2 cut(s)	756, 1168
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	8 cut(s)	61, 117, 172, 240, 516, 693, 762, 981
GsaI	CCCAGC	1 cut(s)	44
HaeIII	GGCC	4 cut(s)	221, 307, 604, 794
HapII	CCGG	4 cut(s)	196, 860, 995, 1107
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	3 cut(s)	546, 1030, 1034
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	3 cut(s)	245, 297, 1129
HpaII	CCGG	4 cut(s)	196, 860, 995, 1107
HphI	GGTGA	2 cut(s)	361, 799
Hpy166II	GTNNAC	2 cut(s)	339, 493
Hpy188I	TCNGA	5 cut(s)	250, 274, 465, 914, 1007
Hpy188III	TCNNGA	3 cut(s)	165, 860, 1060
Hpy8I	GTNNAC	2 cut(s)	339, 493
HpyAV	CCTTC	2 cut(s)	737, 866
HpyCH4III	ACNGT	4 cut(s)	268, 328, 626, 715
HpyCH4IV	ACGT	2 cut(s)	319, 1009
HpyCH4V	TGCA	9 cut(s)	60, 107, 135, 225, 518, 692, 902, 1030, 1034
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 113, 758, 1040
HpyF3I	CTNAG	5 cut(s)	188, 271, 302, 668, 1046
HpySE526I	ACGT	2 cut(s)	319, 1009
Hsp92II	CATG	3 cut(s)	546, 1030, 1034
HspAI	GCGC	1 cut(s)	425
Kpn2I	TCCGGA	1 cut(s)	859
KroI	GCCGGC	1 cut(s)	1106
KroNI	GCCGGC	1 cut(s)	1108
Kzo9I	GATC	3 cut(s)	4, 250, 523
LmnI	GCTCC	4 cut(s)	22, 179, 236, 786
Lsp1109I	GCAGC	8 cut(s)	72, 103, 158, 226, 502, 704, 748, 992
LweI	GCATC	2 cut(s)	274, 465
MaeI	CTAG	2 cut(s)	756, 1168
MaeII	ACGT	2 cut(s)	319, 1009
MaeIII	GTNAC	3 cut(s)	349, 568, 817
MalI	GATC	3 cut(s)	6, 252, 525
MboI	GATC	3 cut(s)	4, 250, 523
MboII	GAAGA	5 cut(s)	18, 211, 688, 1126, 1142
MfeI	CAATTG	2 cut(s)	153, 1101
MflI	RGATCY	2 cut(s)	4, 523
MhlI	GDGCHC	2 cut(s)	791, 1074
MmeI	TCCRAC	2 cut(s)	214, 568
Mph1103I	ATGCAT	1 cut(s)	1032
MroI	TCCGGA	1 cut(s)	859
MroNI	GCCGGC	1 cut(s)	1106
MroXI	GAANNNNTTC	1 cut(s)	1133
MseI	TTAA	5 cut(s)	279, 402, 534, 989, 1016
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	4 cut(s)	196, 860, 995, 1107
MunI	CAATTG	2 cut(s)	153, 1101
Mva1269I	GAATGC	2 cut(s)	407, 1001
MwoI	GCNNNNNNNGC	4 cut(s)	57, 113, 758, 1040
NaeI	GCCGGC	1 cut(s)	1108
NdeII	GATC	3 cut(s)	4, 250, 523
NgoMIV	GCCGGC	1 cut(s)	1106
NlaIII	CATG	3 cut(s)	546, 1030, 1034
NlaIV	GGNNCC	5 cut(s)	38, 308, 646, 875, 970
NmeAIII	GCCGAG	2 cut(s)	770, 1168
NmuCI	GTSAC	2 cut(s)	349, 568
NsiI	ATGCAT	1 cut(s)	1032
NspI	RCATGY	1 cut(s)	1034
PaeI	GCATGC	1 cut(s)	1034
PaeR7I	CTCGAG	1 cut(s)	1073
PctI	GAATGC	2 cut(s)	407, 1001
PdiI	GCCGGC	1 cut(s)	1108
PdmI	GAANNNNTTC	1 cut(s)	1133
PfeI	GAWTC	3 cut(s)	245, 297, 1129
PkrI	GCNGC	8 cut(s)	62, 118, 173, 241, 517, 694, 763, 982
Ppu21I	YACGTR	1 cut(s)	320
PshAI	GACNNNNGTC	1 cut(s)	266
PsiI	TTATAA	1 cut(s)	704
Psp124BI	GAGCTC	1 cut(s)	791
PspFI	CCCAGC	1 cut(s)	40
PspN4I	GGNNCC	5 cut(s)	38, 308, 646, 875, 970
PspPI	GGNCC	4 cut(s)	219, 306, 602, 874
PspXI	VCTCGAGB	1 cut(s)	1073
PstI	CTGCAG	3 cut(s)	62, 227, 520
PstNI	CAGNNNCTG	1 cut(s)	171
PsuI	RGATCY	2 cut(s)	4, 523
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	791
SaqAI	TTAA	5 cut(s)	279, 402, 534, 989, 1016
SatI	GCNGC	8 cut(s)	61, 117, 172, 240, 516, 693, 762, 981
Sau3AI	GATC	3 cut(s)	4, 250, 523
Sau96I	GGNCC	4 cut(s)	219, 306, 602, 874
SduI	GDGCHC	2 cut(s)	791, 1074
SfaNI	GCATC	2 cut(s)	274, 465
SfcI	CTRYAG	4 cut(s)	58, 223, 516, 1114
Sfr274I	CTCGAG	1 cut(s)	1073
SinI	GGWCC	1 cut(s)	874
SlaI	CTCGAG	1 cut(s)	1073
SmlI	CTYRAG	2 cut(s)	127, 1073
SmoI	CTYRAG	2 cut(s)	127, 1073
SphI	GCATGC	1 cut(s)	1034
SsiI	CCGC	4 cut(s)	34, 566, 665, 877
SspMI	CTAG	2 cut(s)	756, 1168
SstI	GAGCTC	1 cut(s)	791
StyI	CCWWGG	3 cut(s)	640, 766, 1092
TaaI	ACNGT	4 cut(s)	268, 328, 626, 715
TaiI	ACGT	2 cut(s)	322, 1012
TaqI	TCGA	1 cut(s)	1074
TatI	WGTACW	1 cut(s)	147
TfiI	GAWTC	3 cut(s)	245, 297, 1129
Tru1I	TTAA	5 cut(s)	279, 402, 534, 989, 1016
Tru9I	TTAA	5 cut(s)	279, 402, 534, 989, 1016
TscAI	CASTG	4 cut(s)	62, 109, 577, 1050
TseFI	GTSAC	2 cut(s)	349, 568
TseI	GCWGC	8 cut(s)	60, 116, 171, 239, 515, 692, 761, 980
Tsp45I	GTSAC	2 cut(s)	349, 568
TspDTI	ATGAA	3 cut(s)	598, 689, 1153
TspRI	CASTG	4 cut(s)	62, 109, 577, 1050
VpaK11BI	GGWCC	1 cut(s)	874
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	1073
XmiI	GTMKAC	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	1133
XspI	CTAG	2 cut(s)	756, 1168
Zsp2I	ATGCAT	1 cut(s)	1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.