Rh3AG214700

Homogentisate phytyltransferase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008712
Physical Location & Seq
Forward (+)
21611030 .. 21615855
4826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG214700.1

Sequence Viewer

Length: 978 bp
ATGTGTCCGAGTTTGGAAAAAGCCTATCCAAGTTTCTCGGCGCAAACTGAGTCACTGTGTCGTATTAGCATTAGAATGGAGCTCTCACTCGCTCCTTCCCCCTCCTCCTCTCCGCTTCGGATTCGATTCTCTCATTGCACCACCACCAAACCCTCTTCTTTCCCTTCTTCAATTGTCACTACTACTTCCAAATCCCACTCCCTTTCTTCTCTCTCACAATGCACTCACAGCTCCAACTCATTTCGGCTCAACACATGCTCTACATCATCCCTCAACTTCCACAGGAGGCCAAATTCCATCTGGGCCTGCAGTCAAGCTGAAGCTGCTGGGCCTGATCCGGTGCTGGCCAAAGTTTCGGATTTTAAGGATGCTTGTTGGAGATTCCTGAGGCCCCATACCATACGAGGAACAGCTCTTGGGTCAACTGCTTTGGTGACAAGGGCGTTGATTGAGAACTCCCATTTGATAAAGTGGACTTTGCTGTTTAAGGCATTCTCTGGTCTTTTTGCTCTACTGTGTGGGAATGGCTATATTGTTGGCATCAATCAGATATATGATATCAAAATTGACAAGGTAAACAAACCTTATTTACCCATAGCAGCAGGAGATCTCTCCGTCAAATCAGCATGGCTCTTGGTTATATTCTTTGCAGTTGCTGGCCTGTTGATTGTTGGATTCAACTTTGGGCCATTCATTACTTCTCTTTACAGTCTTGGTCTTTTCCTTGGCACCATCTATTCTGTTCCTCCATTTAGAATGAAGAGATTTCCTGTTGCGGCATTTCTTATAATTGCCACGGTACGGGGTTTCCTTCTTAATTTTGGTGTATATTATGCCACTAGAGCTGCCCTCGGACTTCAATTTGAGTGGAGGTGTGTACCAATTGTGCTATTTTGCTTTAACATGTTGTTTCAGATAAAATGGCATATAACCAACGGTAGTAAAGACATGGTGACCCTCTGTTGTCAAGCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
UbiA

Protein Analysis

325

Amino Acids

35.94

Weight (kDa)

9.67

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 142 - 309 3.8e-24 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 788
AccB1I GGYRCC 1 cut(s) 728
AciI CCGC 2 cut(s) 113, 776
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 2 cut(s) 801, 879
AfiI CCNNNNNNNGG 1 cut(s) 801
AflIII ACRYGT 1 cut(s) 903
AgsI TTSAA 3 cut(s) 171, 679, 860
AluBI AGCT 7 cut(s) 82, 231, 317, 323, 413, 845, 971
AluI AGCT 7 cut(s) 82, 231, 317, 323, 413, 845, 971
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 656
AoxI GGCC 7 cut(s) 287, 303, 329, 345, 389, 658, 686
ApeKI GCWGC 3 cut(s) 323, 599, 845
ApoI RAATTY 1 cut(s) 292
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 4 cut(s) 303, 329, 390, 686
AsuHPI GGTGA 2 cut(s) 445, 964
AxyI CCTNAGG 1 cut(s) 386
BalI TGGCCA 1 cut(s) 347
BanI GGYRCC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 310, 611, 832
BccI CCATC 2 cut(s) 305, 740
BfaI CTAG 2 cut(s) 840, 972
BfmI CTRYAG 1 cut(s) 307
BglII AGATCT 1 cut(s) 607
BisI GCNGC 4 cut(s) 324, 600, 777, 846
BlsI GCNGC 4 cut(s) 325, 601, 778, 847
BmgT120I GGNCC 4 cut(s) 303, 329, 390, 686
BmiI GGNNCC 2 cut(s) 392, 730
BmsI GCATC 2 cut(s) 358, 549
BplI GAGNNNNNCTC 2 cut(s) 834, 866
BsaJI CCNNGG 3 cut(s) 724, 795, 850
BsaWI WCCGGW 1 cut(s) 337
Bsc4I CCNNNNNNNGG 1 cut(s) 801
Bse21I CCTNAGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 133
BseDI CCNNGG 3 cut(s) 724, 795, 850
BseGI GGATG 2 cut(s) 266, 373
BseLI CCNNNNNNNGG 1 cut(s) 801
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 39, 377
BseRI GAGGAG 2 cut(s) 94, 97
BseXI GCAGC 3 cut(s) 310, 611, 832
BseYI CCCAGC 1 cut(s) 326
BshFI GGCC 7 cut(s) 289, 305, 331, 347, 391, 660, 688
BshNI GGYRCC 1 cut(s) 728
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 801
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 7 cut(s) 289, 305, 331, 347, 391, 660, 688
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 334, 607
BspACI CCGC 2 cut(s) 113, 776
BspANI GGCC 7 cut(s) 289, 305, 331, 347, 391, 660, 688
BspCNI CTCAG 2 cut(s) 40, 378
BspLI GGNNCC 2 cut(s) 392, 730
BspMAI CTGCAG 1 cut(s) 311
BspPI GGATC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 133
BssECI CCNNGG 3 cut(s) 724, 795, 850
BssMI GATC 2 cut(s) 334, 607
BssT1I CCWWGG 1 cut(s) 724
Bst4CI ACNGT 5 cut(s) 57, 516, 710, 799, 938
Bst6I CTCTTC 2 cut(s) 160, 755
BstC8I GCNNGC 3 cut(s) 307, 345, 658
BstDEI CTNAG 2 cut(s) 48, 386
BstDSI CCRYGG 1 cut(s) 795
BstEII GGTNACC 1 cut(s) 952
BstF5I GGATG 2 cut(s) 266, 373
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 337, 610
BstMBI GATC 2 cut(s) 334, 607
BstMWI GCNNNNNNNGC 3 cut(s) 228, 323, 842
BstNSI RCATGY 2 cut(s) 258, 907
BstPI GGTNACC 1 cut(s) 952
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 3 cut(s) 310, 611, 832
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
Bsu36I CCTNAGG 1 cut(s) 386
BsuRI GGCC 7 cut(s) 289, 305, 331, 347, 391, 660, 688
BtgI CCRYGG 1 cut(s) 795
BtsCI GGATG 2 cut(s) 266, 373
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 3 cut(s) 307, 345, 658
CaiI CAGNNNCTG 1 cut(s) 656
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 4 cut(s) 303, 329, 390, 686
Csp6I GTAC 2 cut(s) 800, 878
CspCI CAANNNNNGTGG 2 cut(s) 848, 883
CviAII CATG 4 cut(s) 255, 627, 904, 949
CviQI GTAC 2 cut(s) 800, 878
DdeI CTNAG 2 cut(s) 48, 386
DpnI GATC 2 cut(s) 336, 609
DpnII GATC 2 cut(s) 334, 607
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 2 cut(s) 160, 755
EarI CTCTTC 2 cut(s) 160, 755
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 724
Eco24I GRGCYC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 559
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 339
Eco81I CCTNAGG 1 cut(s) 386
Eco91I GGTNACC 1 cut(s) 952
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 390
EcoO65I GGTNACC 1 cut(s) 952
EcoRV GATATC 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 724
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 724
FaeI CATG 4 cut(s) 258, 630, 907, 952
FatI CATG 4 cut(s) 254, 626, 903, 948
Fnu4HI GCNGC 4 cut(s) 324, 600, 777, 846
FokI GGATG 2 cut(s) 253, 380
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 4 cut(s) 324, 600, 777, 846
FspBI CTAG 2 cut(s) 840, 972
GlaI GCGC 1 cut(s) 42
GluI GCNGC 4 cut(s) 324, 600, 777, 846
GsaI CCCAGC 1 cut(s) 330
HaeIII GGCC 7 cut(s) 289, 305, 331, 347, 391, 660, 688
HapII CCGG 1 cut(s) 338
HhaI GCGC 1 cut(s) 43
Hin1II CATG 4 cut(s) 258, 630, 907, 952
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 5 cut(s) 50, 121, 126, 381, 675
HpaII CCGG 1 cut(s) 338
HphI GGTGA 2 cut(s) 445, 964
Hpy166II GTNNAC 4 cut(s) 423, 474, 577, 878
Hpy188I TCNGA 6 cut(s) 9, 120, 358, 549, 854, 915
Hpy188III TCNNGA 1 cut(s) 385
Hpy8I GTNNAC 4 cut(s) 423, 474, 577, 878
HpyAV CCTTC 3 cut(s) 105, 174, 821
HpyCH4III ACNGT 5 cut(s) 57, 516, 710, 799, 938
HpyCH4V TGCA 4 cut(s) 138, 222, 309, 650
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 323, 842
HpyF3I CTNAG 2 cut(s) 48, 386
Hsp92II CATG 4 cut(s) 258, 630, 907, 952
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 334, 607
LmnI GCTCC 3 cut(s) 79, 97, 236
Lsp1109I GCAGC 3 cut(s) 310, 611, 832
LweI GCATC 2 cut(s) 358, 549
MaeI CTAG 2 cut(s) 840, 972
MaeIII GTNAC 4 cut(s) 51, 175, 433, 952
MalI GATC 2 cut(s) 336, 609
MboI GATC 2 cut(s) 334, 607
MboII GAAGA 4 cut(s) 147, 159, 198, 772
MfeI CAATTG 2 cut(s) 171, 882
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 7 cut(s) 171, 292, 564, 789, 817, 860, 882
MluNI TGGCCA 1 cut(s) 347
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 3 cut(s) 258, 356, 652
Mox20I TGGCCA 1 cut(s) 347
MscI TGGCCA 1 cut(s) 347
MseI TTAA 4 cut(s) 363, 486, 816, 900
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 347
MspI CCGG 1 cut(s) 338
MunI CAATTG 2 cut(s) 171, 882
Mva1269I GAATGC 1 cut(s) 491
MwoI GCNNNNNNNGC 3 cut(s) 228, 323, 842
NdeII GATC 2 cut(s) 334, 607
NlaIII CATG 4 cut(s) 258, 630, 907, 952
NlaIV GGNNCC 2 cut(s) 392, 730
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 4 cut(s) 51, 175, 433, 952
NspI RCATGY 2 cut(s) 258, 907
PciI ACATGT 1 cut(s) 903
PctI GAATGC 1 cut(s) 491
PfeI GAWTC 4 cut(s) 121, 126, 381, 675
PkrI GCNGC 4 cut(s) 325, 601, 778, 847
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PscI ACATGT 1 cut(s) 903
PsiI TTATAA 1 cut(s) 788
Psp124BI GAGCTC 1 cut(s) 84
PspEI GGTNACC 1 cut(s) 952
PspFI CCCAGC 1 cut(s) 326
PspN4I GGNNCC 2 cut(s) 392, 730
PspPI GGNCC 4 cut(s) 303, 329, 390, 686
PstI CTGCAG 1 cut(s) 311
PstNI CAGNNNCTG 1 cut(s) 656
PsuI RGATCY 1 cut(s) 607
RsaI GTAC 2 cut(s) 801, 879
RsaNI GTAC 2 cut(s) 800, 878
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 363, 486, 816, 900
SatI GCNGC 4 cut(s) 324, 600, 777, 846
Sau3AI GATC 2 cut(s) 334, 607
Sau96I GGNCC 4 cut(s) 303, 329, 390, 686
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 2 cut(s) 358, 549
SfcI CTRYAG 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 7 cut(s) 171, 292, 564, 789, 817, 860, 882
SsiI CCGC 2 cut(s) 113, 776
SspMI CTAG 2 cut(s) 840, 972
SstI GAGCTC 1 cut(s) 84
StyI CCWWGG 1 cut(s) 724
TaaI ACNGT 5 cut(s) 57, 516, 710, 799, 938
TaqI TCGA 1 cut(s) 124
TasI AATT 7 cut(s) 171, 292, 564, 789, 817, 860, 882
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 4 cut(s) 121, 126, 381, 675
Tru1I TTAA 4 cut(s) 363, 486, 816, 900
Tru9I TTAA 4 cut(s) 363, 486, 816, 900
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 4 cut(s) 51, 175, 433, 952
TseI GCWGC 3 cut(s) 323, 599, 845
Tsp45I GTSAC 4 cut(s) 51, 175, 433, 952
TspDTI ATGAA 2 cut(s) 682, 773
TspGWI ACGGA 1 cut(s) 604
TspRI CASTG 1 cut(s) 60
XapI RAATTY 1 cut(s) 292
XceI RCATGY 2 cut(s) 258, 907
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XspI CTAG 2 cut(s) 840, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.