Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001598

Physical Location & Seq

Genomic Coordinates Reverse (-)

3868089 .. 3871763

Gene Structure 3675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAGACACAAATTCATCAACTTGAGCAGGAAGCATATACCGCTGTTTTAAGGGCTTTTAAAGCGCAGTCTGATGCGATTTCTTGGGAAAAAGAAAGCTTGATAACCGAATTGCGTAAAGAATTGAGAGTATCTGATGATGAACATCGAGAGCTTCTCAGTAGGGTCAATAAGGATGATACTATCCAGAGGATAAGAGATTGGAGACAGGGAGGCGCAAGCCAAATTACTAGACATGCAACTATTCAGCCTTTTGATGTTCTTCCTAGTCCCACTTTCTCAGCTGCCCGAAAGAAACAGAAAACATTTCCATCTTATAATCCATCAATTGGTGCGACTGGAAATAGGTCATTCAATAATCGTCTGGTATCCAGTGGCATATCAGGAAATGAATCTGCTGAAGCTCTGATCGGAAGAAAAGTGTGGACAAAATGGCCTGAAGATAACCACTTCTATGAAGCAATTATAACCCAGTACAATGCAGATGAGGGTCGGCATGCTTTGGTGTATGATATACACGCAGCTAATGAAACGTGGGAATGGGTTGATCTCAAGGAGATACCACCGGAAGACATAAGATGGGATGGGGAGGAGAGTGGGGTAGCTTTAAACATTGGACATGGAAGTGCATCCTTCCGTGGCAACAGAAGAGGCCAAATCCATGGTGGTAGAGGGAGAGGACCAAGAATTCATCAACCAAGAAGGGAACTTGTACCGCCACCAACACAACAGAATGGTAGTGGTGGGCGGAGAACTTCCTCTGATGATATTGAGTTGTTCAACACAGACTCGCTTGTGAAGGAGGTGGAGAGAGTTTTCGATTCTACGCATCCTGATCCACTCGAGCTCGACAAGGCCAAGAAAATGCTCAAGGAACATGAACAGGCACTCATTGCTGCCATTGCAAGGCTTGCTGATACTTCGGATGGCGAAATGGATGGAGATCCACCATATTCGCATGATCATCCAATGCCACAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ENT

Protein Analysis

327

Amino Acids

36.91

Weight (kDa)

5.74

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ENT	PF03735	3 - 71	5.1e-33	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12140 AT3G12140 AT3G12140 AT5G06780 AT5G06780
fragaria_vesca	FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490
malus_domestica	MD12G1058900.v1.1 MD14G1059100.v1.1
prunus_persica	Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1
pyrus_communis	pycom12g05200 pycom14g04800
rosa_chinensis	RchiOBHm_Chr3g0479901
rosa_laevigata	RLG00000023526
rosa_multiflora	Rmu_sc0003400.1_g000027
rosa_roxburghii	Rroxscaffold_6G00401910
rosa_rugosa	Rorug03G0179300 Rorug03G0179300 Rorug03G0179400 Rorug03G0179500
rosa_samantha	Rh3AG230400 Rh3BG263000 Rh3CG260600 Rh3DG256400
rosa_wichuraiana	Rw0G015230 Rw3G020750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	318, 467
AccB7I	CCANNNNNTGG	1 cut(s)	329
AciI	CCGC	3 cut(s)	42, 716, 748
AclWI	GGATC	2 cut(s)	830, 938
AcsI	RAATTY	2 cut(s)	12, 687
AcuI	CTGAAG	2 cut(s)	420, 459
AfaI	GTAC	2 cut(s)	476, 714
AfiI	CCNNNNNNNGG	2 cut(s)	329, 906
AgsI	TTSAA	2 cut(s)	355, 781
AluBI	AGCT	7 cut(s)	99, 154, 284, 404, 524, 605, 847
AluI	AGCT	7 cut(s)	99, 154, 284, 404, 524, 605, 847
Alw21I	GWGCWC	1 cut(s)	849
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	2 cut(s)	830, 938
Ama87I	CYCGRG	1 cut(s)	842
AoxI	GGCC	3 cut(s)	434, 652, 855
ApeKI	GCWGC	3 cut(s)	284, 521, 896
ApoI	RAATTY	2 cut(s)	12, 687
AspLEI	GCGC	2 cut(s)	67, 218
AspS9I	GGNCC	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	842
AvaII	GGWCC	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	849
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	849
BbvI	GCAGC	3 cut(s)	271, 533, 883
BccI	CCATC	6 cut(s)	319, 331, 573, 578, 920, 932
BciVI	GTATCC	1 cut(s)	379
BclI	TGATCA	1 cut(s)	961
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	231, 267
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	3 cut(s)	285, 522, 897
BlsI	GCNGC	3 cut(s)	286, 523, 898
Bme18I	GGWCC	1 cut(s)	680
BmeT110I	CYCGRG	1 cut(s)	842
BmgT120I	GGNCC	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	3 cut(s)	64, 638, 838
BmuI	ACTGGG	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	576
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpuEI	CTTGAG	3 cut(s)	44, 536, 854
BsaBI	GATNNNNATC	2 cut(s)	144, 942
BsaJI	CCNNGG	2 cut(s)	637, 661
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 906
Bse1I	ACTGG	3 cut(s)	343, 372, 472
Bse3DI	GCAATG	2 cut(s)	891, 900
Bse8I	GATNNNNATC	2 cut(s)	144, 942
BseDI	CCNNGG	2 cut(s)	637, 661
BseGI	GGATG	7 cut(s)	181, 589, 629, 829, 931, 943, 964
BseJI	GATNNNNATC	2 cut(s)	144, 942
BseLI	CCNNNNNNNGG	2 cut(s)	329, 906
BseMI	GCAATG	2 cut(s)	891, 900
BseMII	CTCAG	2 cut(s)	172, 294
BseNI	ACTGG	3 cut(s)	343, 372, 472
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	3 cut(s)	271, 533, 883
BshFI	GGCC	3 cut(s)	436, 654, 857
BsiHKAI	GWGCWC	1 cut(s)	849
BsiHKCI	CYCGRG	1 cut(s)	842
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	329, 906
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	3 cut(s)	436, 654, 857
BsoBI	CYCGRG	1 cut(s)	842
Bsp1286I	GDGCHC	1 cut(s)	849
Bsp143I	GATC	5 cut(s)	408, 547, 835, 943, 961
Bsp19I	CCATGG	1 cut(s)	661
BspACI	CCGC	3 cut(s)	42, 716, 748
BspANI	GGCC	3 cut(s)	436, 654, 857
BspCNI	CTCAG	2 cut(s)	171, 293
BspPI	GGATC	2 cut(s)	830, 938
BsrDI	GCAATG	2 cut(s)	891, 900
BsrI	ACTGG	3 cut(s)	343, 372, 472
BssECI	CCNNGG	2 cut(s)	637, 661
BssMI	GATC	5 cut(s)	408, 547, 835, 943, 961
BssT1I	CCWWGG	1 cut(s)	661
Bst6I	CTCTTC	1 cut(s)	643
BstAPI	GCANNNNNTGC	2 cut(s)	893, 911
BstC8I	GCNNGC	3 cut(s)	220, 498, 912
BstDEI	CTNAG	2 cut(s)	158, 280
BstDSI	CCRYGG	2 cut(s)	637, 661
BstF5I	GGATG	7 cut(s)	181, 589, 629, 829, 931, 943, 964
BstHHI	GCGC	2 cut(s)	67, 218
BstKTI	GATC	5 cut(s)	411, 550, 838, 946, 964
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	5 cut(s)	408, 547, 835, 943, 961
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 62, 893, 902, 911
BstNSI	RCATGY	2 cut(s)	239, 500
BstV1I	GCAGC	3 cut(s)	271, 533, 883
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	943
BstXI	CCANNNNNNTGG	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	943
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	436, 654, 857
BtgI	CCRYGG	2 cut(s)	637, 661
BtsCI	GGATG	7 cut(s)	181, 589, 629, 829, 931, 943, 964
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	3 cut(s)	220, 498, 912
CfoI	GCGC	2 cut(s)	67, 218
Cfr13I	GGNCC	1 cut(s)	680
Csp6I	GTAC	2 cut(s)	475, 713
CviAII	CATG	6 cut(s)	236, 497, 620, 662, 878, 959
CviQI	GTAC	2 cut(s)	475, 713
DdeI	CTNAG	2 cut(s)	158, 280
DpnI	GATC	5 cut(s)	410, 549, 837, 945, 963
DpnII	GATC	5 cut(s)	408, 547, 835, 943, 961
DraI	TTTAAA	2 cut(s)	61, 609
Eam1104I	CTCTTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	643
EciI	GGCGGA	1 cut(s)	763
Ecl136II	GAGCTC	1 cut(s)	847
Eco130I	CCWWGG	1 cut(s)	661
Eco24I	GRGCYC	1 cut(s)	849
Eco47I	GGWCC	1 cut(s)	680
Eco53kI	GAGCTC	1 cut(s)	847
Eco57I	CTGAAG	2 cut(s)	420, 459
Eco88I	CYCGRG	1 cut(s)	842
EcoICRI	GAGCTC	1 cut(s)	847
EcoRI	GAATTC	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	661
EcoT38I	GRGCYC	1 cut(s)	849
ErhI	CCWWGG	1 cut(s)	661
FaeI	CATG	6 cut(s)	239, 500, 623, 665, 881, 962
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	6 cut(s)	235, 496, 619, 661, 877, 958
FbaI	TGATCA	1 cut(s)	961
Fnu4HI	GCNGC	3 cut(s)	285, 522, 897
FokI	GGATG	7 cut(s)	188, 596, 616, 816, 938, 950, 951
FriOI	GRGCYC	1 cut(s)	849
Fsp4HI	GCNGC	3 cut(s)	285, 522, 897
FspBI	CTAG	2 cut(s)	231, 267
GlaI	GCGC	2 cut(s)	66, 217
GluI	GCNGC	3 cut(s)	285, 522, 897
HaeIII	GGCC	3 cut(s)	436, 654, 857
HapII	CCGG	1 cut(s)	566
HhaI	GCGC	2 cut(s)	67, 218
Hin1II	CATG	6 cut(s)	239, 500, 623, 665, 881, 962
Hin6I	GCGC	2 cut(s)	65, 216
HinP1I	GCGC	2 cut(s)	65, 216
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	3 cut(s)	392, 788, 821
HpaII	CCGG	1 cut(s)	566
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	6 cut(s)	73, 136, 408, 413, 763, 925
Hpy188III	TCNNGA	4 cut(s)	149, 187, 384, 833
Hpy8I	GTNNAC	1 cut(s)	426
HpyAV	CCTTC	3 cut(s)	643, 696, 793
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	4 cut(s)	239, 482, 629, 905
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 62, 893, 902, 911
HpyF3I	CTNAG	2 cut(s)	158, 280
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	6 cut(s)	239, 500, 623, 665, 881, 962
HspAI	GCGC	2 cut(s)	65, 216
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	5 cut(s)	408, 547, 835, 943, 961
Lsp1109I	GCAGC	3 cut(s)	271, 533, 883
LweI	GCATC	3 cut(s)	64, 638, 838
MaeI	CTAG	2 cut(s)	231, 267
MaeII	ACGT	1 cut(s)	533
MalI	GATC	5 cut(s)	410, 549, 837, 945, 963
MboI	GATC	5 cut(s)	408, 547, 835, 943, 961
MboII	GAAGA	5 cut(s)	254, 426, 452, 581, 660
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	943
MhlI	GDGCHC	1 cut(s)	849
MluCI	AATT	7 cut(s)	12, 110, 122, 225, 327, 462, 687
MlyI	GAGTC	1 cut(s)	782
MnlI	CCTC	9 cut(s)	183, 206, 481, 583, 644, 665, 671, 769, 796
MseI	TTAA	3 cut(s)	50, 60, 608
MslI	CAYNNNNRTG	3 cut(s)	453, 624, 979
MspA1I	CMGCKG	2 cut(s)	44, 284
MspI	CCGG	1 cut(s)	566
MunI	CAATTG	1 cut(s)	327
MwoI	GCNNNNNNNGC	5 cut(s)	41, 62, 893, 902, 911
NcoI	CCATGG	1 cut(s)	661
NdeII	GATC	5 cut(s)	408, 547, 835, 943, 961
NlaIII	CATG	6 cut(s)	239, 500, 623, 665, 881, 962
NspI	RCATGY	2 cut(s)	239, 500
PaeI	GCATGC	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	842
PfeI	GAWTC	2 cut(s)	392, 821
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	286, 523, 898
PleI	GAGTC	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	782
PsiI	TTATAA	2 cut(s)	318, 467
Psp124BI	GAGCTC	1 cut(s)	849
PspPI	GGNCC	1 cut(s)	680
PspXI	VCTCGAGB	1 cut(s)	842
PsuI	RGATCY	1 cut(s)	943
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	2 cut(s)	476, 714
RsaNI	GTAC	2 cut(s)	475, 713
RseI	CAYNNNNRTG	3 cut(s)	453, 624, 979
SacI	GAGCTC	1 cut(s)	849
SaqAI	TTAA	3 cut(s)	50, 60, 608
SatI	GCNGC	3 cut(s)	285, 522, 897
Sau3AI	GATC	5 cut(s)	408, 547, 835, 943, 961
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	1 cut(s)	782
SduI	GDGCHC	1 cut(s)	849
SfaNI	GCATC	3 cut(s)	64, 638, 838
Sfr274I	CTCGAG	1 cut(s)	842
SinI	GGWCC	1 cut(s)	680
SlaI	CTCGAG	1 cut(s)	842
SmiMI	CAYNNNNRTG	3 cut(s)	453, 624, 979
SmlI	CTYRAG	4 cut(s)	23, 551, 842, 869
SmoI	CTYRAG	4 cut(s)	23, 551, 842, 869
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	7 cut(s)	12, 110, 122, 225, 327, 462, 687
SsiI	CCGC	3 cut(s)	42, 716, 748
SspMI	CTAG	2 cut(s)	231, 267
SstI	GAGCTC	1 cut(s)	849
StyI	CCWWGG	1 cut(s)	661
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	4 cut(s)	148, 819, 843, 849
TasI	AATT	7 cut(s)	12, 110, 122, 225, 327, 462, 687
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	2 cut(s)	392, 821
Tru1I	TTAA	3 cut(s)	50, 60, 608
Tru9I	TTAA	3 cut(s)	50, 60, 608
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	3 cut(s)	284, 521, 896
TspDTI	ATGAA	7 cut(s)	5, 156, 405, 471, 543, 680, 894
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	1 cut(s)	379
Van91I	CCANNNNNTGG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	680
XapI	RAATTY	2 cut(s)	12, 687
XceI	RCATGY	2 cut(s)	239, 500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XhoI	CTCGAG	1 cut(s)	842
XspI	CTAG	2 cut(s)	231, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.